Array 1 48-682 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 48 30 100.0 37 .............................. ATTAGTATCACGGGCAGGCTTATCGCCCCTGCTACTA 115 30 100.0 39 .............................. TAGAGTATCACTTGCTCCACGCCATTGGCTTTAGCCTCA 184 30 100.0 37 .............................. TAAGCATTTTTTGCGTTCGTGTCGTATGTAGTCTTAA 251 30 100.0 37 .............................. CTGGCAACAGCATAAAGTACTGCCCACCTGTTACCAA 318 30 100.0 38 .............................. GGCTGCCCCCTGGGTACTCTATTACCGCTGCCGTCCTA 386 30 100.0 36 .............................. AGTTTAAGAAGGCCGTTTACGACGGAGAGGGCTTTT 452 30 100.0 36 .............................. GTTGGCGGCATGAGCGTGGGCGAGGGCATCGTGAAC 518 30 100.0 38 .............................. ATAATCCTTTTGTTTGTATAGTTCACTACTCTTAATGT 586 30 96.7 37 .............................G CTTTCTCTTGCAAAGTCGAGCAAGTCTTTGAGATACT 653 30 90.0 0 .......................GA....G | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.7 37 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Left flank : AGAATTGAAACTTGGGGTTTTTGCAGGTGGGGGAAGTGTTGCCCCATG # Right flank : GCCTTCCCCTGCCAACTATTGCGGGCAATGTGCGCTATAATAGGACCGGCTAGAATCAAAGCATTCCCCGCTTAAAGTCAGCCCCTTCGAAGTGCGGAAATCTTTTATCAAACCGCCGGAACTTTTTTTGGTGGTTGCATGAGGGCCAGAATCGTCGAGCGCTTTAAATTTGAAGCGGCTCACGCCGTGGTCATAGATGGAAAGCCCGAGGAGCTTCACGGCCACACCTTCAGGCTCGAGGTCGCGGTTGAGGGGCCGCTAAGGAACGGCTACGTCATGGACTTCCTGGAGCTGAGAAAGCTCGTCGAGGAAATCCTTGAGGAGCTGGACCACCGGAACCTCAACGGCATCTTCGAGAATCCTACAACCGAGAACGTTGCGCTATGGATAGCAGGGGAGGTTGAGAAGCGCCTTTCCAATGGCGTAAGACTAAAACGCATAGTCCTCTGGGAGGGCGACGAGAACGGGGTGGAGTTTGAGTTCTGAGAAACGTTTTTATC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 103080-100515 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 103079 30 100.0 36 .............................. CTACGGAGTCATCATCTACCTCGACAATGAGAAGAA 103013 30 100.0 37 .............................. GAGGAAATAGCAGAAATAGCAGAGAATGAGGCTGAAT 102946 30 100.0 38 .............................. CGACCCTTCACCTCAACCAGCTTACCCACATGCTCAGC 102878 30 100.0 37 .............................. CTATCCGTTACCGCGAGAAAGCCCTCCCACTCTCCGA 102811 30 100.0 37 .............................. CTCGACCCGACAAAAATCAAAAAGCTCGACGTCATAG 102744 30 100.0 37 .............................. CTACGGAACTTACGGCGCCTGCAAACTCCTCCAGGCC 102677 30 100.0 40 .............................. CACTTTCACCACAAACCCAATCGAGCGAGGCGGTTTTAGT 102607 30 100.0 36 .............................. GACGAAGCACACAAGGGCAGGCTTGCGGCGATGGTC 102541 30 100.0 38 .............................. GGGGTGGCCGTCAGCCTCCTTAGTCCAAACCTCCAGAA 102473 30 100.0 33 .............................. TTCTGTTCCATTTTATTTGGAACGTCTGTCTCG 102410 30 100.0 37 .............................. GAATTTGCCACCAACTTAGCAGAAAGACGGCAAGATG 102343 30 100.0 36 .............................. CGAGAGGTGAGCGAGAATGAGTGAGAGAGATAAGGT 102277 30 100.0 36 .............................. TATTATGTAACAAAAGAAGGCAACGCCTACTTAAGC 102211 30 100.0 38 .............................. GTCTTCACTGCCTCCTTGAACACGCGCTCAAGGATTTT 102143 30 100.0 37 .............................. GAATTCTGGAGAATTCTGGTTCAGTGCATAAGAGGCT 102076 30 100.0 37 .............................. AAAGTCTCCCTCAGTTCCCTCACCCGCTCAACGTCCT 102009 30 100.0 35 .............................. TGAAGTTATCGTTGAATACTTCAAGCAGAACGGAA 101944 30 100.0 36 .............................. TGAAGCTGAAGGTTAAAGATAAGGCCAAGGCCAGAG 101878 30 100.0 38 .............................. GCATTATTCCAGGCAGTCGGGCACTGTTTTTACTGCGC 101810 30 100.0 38 .............................. AGTATCGGGGTTTTATCATAAAGCAGTCTTGAGCGCCC 101742 30 100.0 37 .............................. GAGTTGCAGGCAAGTGTAGGGATACTCGCCATAGCGG 101675 30 100.0 38 .............................. GTCTTCACTGCCTCCTTGAACACGCGCTCAAGGATTTT 101607 30 100.0 35 .............................. GGATTCGGCACGATGTAGAACTTGTAGTCGGCGGT 101542 30 100.0 36 .............................. TTTTCCAGGTTTGTAGCGGCTTTCCCCTTTATCTCT 101476 30 100.0 37 .............................. TGGCCGACGCGTTCATCGCATTGGCCGGGGCCATGGA 101409 30 100.0 38 .............................. GTGGTTCCACTGGAAGTAAACCTTTTATAAGAAGAGAG 101341 30 100.0 37 .............................. ACCAGATTAGCGGCTTTAACTTGTGGGTCAGCCGCTA 101274 30 100.0 35 .............................. GGTTATGTTGGGGAGTAGTATGGCGGTTATGATGG 101209 30 100.0 37 .............................. ATAAGGGGAACGGCGGGAACGGTGGTTTTGTTTTTGA 101142 30 100.0 34 .............................. TCAGGATTGAGCGGAAGGTGGGCGACCGTGGTGT 101078 30 100.0 37 .............................. TGCTAACTTTCTGTGCCAAAAAATCAAAAATTTTCGC 101011 30 100.0 35 .............................. ACGTTGATGAGCGGTTGAGCCAAATCAACCGCTTC 100946 30 96.7 37 .............................G GGGAAACGCAGTTTACCAAGGCCGTTACGGTAGGCAG 100879 30 96.7 38 .............................G TGACATAGGAGAGAGTCTTTGCAAAGGCCCACAGCACA 100811 30 96.7 36 .............................G GGGAGGGGGCATTGTATTATCTTGACGCCAACCCAG 100745 30 96.7 38 .............................G TGGGGATGTCGAACTTCCTCGCGAGCATTTCAAAGCTG 100677 30 96.7 36 .............................G AAGAATTGAAAGGAGAATGAGCCGTTCATGAAGCCC 100611 30 96.7 37 .............................G TAACATAAACTAAAAAGATGTGGTGGGGCGTCATCAC 100544 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================== ================== 39 30 99.4 37 GTTGCAATAAGACTCTGGGAGAATTGAAAT # Left flank : ATATATATCTTTCGACCGCCCTCCCTGTGAGATTATCACGCTGAGGTGATTTTGATTTGAATTTCCTCCCATTGGTGGCGGCGGATTTTTAAAATTTCACTTTACGTGCCCCCGGAGATCGATTTTTGGGCTTTTGTATCTGTAACTTTTTGTTGCGATGAGCACATTGAACTGTAACGAATTTTCTTCGGAATTCTAAAAACAGGCAGGGGGTGGTTGGAAAACACCCTTATCCCAGTGGAAACAGTTTCTTTTTGCATTTTAATCTGCCTTCGAGGTTTTTTGGCGTTTTAAGCGCTTTGGAATGGTCAGGAAATCGTGTGCACTTTTTCATACATCAGGGGATTCAGCCGGTTGAGCGGGTGTTTGAGGTGCTGCCTCCTCTTTGGCTTCTTGGATCCACGACTTTTGGCGGGCTCTTTTCCAGTGGTCTTCAGAAAGGCTTAAATATTCGAGACTGCATAGGCTTTTACTGGGCGAACGGGCGGAATTCCCGCCCT # Right flank : GGAGGGTTTTGATTTTGGGCATGATCTTCTTATATTGATATCCTGGGCTGGATCGGCTGTCGTGCACTATCGAATTGACAAAATCGAGGAGACCAGAATATCGCCAGGCGCCTAGTGTGTTCTAAGATTAAAAATAAAACTTACTGGCCAGAAACGGACAGAAAATTTGAAAAGCGCATCAGAAGAGCCACTGGTTCTCTATGCACTCGTCGCAGGGCGGCTTTTCTCCAGCGATGGCCTTGAACTTCGTGTAGATGCACTCGGGCAGGCCGAGCGGGCAGCGCTCCGGCGTGGCGCCGGGCCTCACCTTGGTCGGGTCGAGCTTTATCCTGATGTAGGCCTCGTACTCCTCGACCTTCTTCCAGGGCAGTATCTTGGCGCCGTAGATGACGAGGTTGTCGTATATCCTTGCGTAGTCGCCGACGACGGCGTTTTCCTTGAGTATAACGTTCTTCCCGACGACGACACCTTCGCCGAGAATGCTGTCCTTTATCTCGGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 347447-350182 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 347447 30 100.0 34 .............................. GTTACCAACGCCGCCGGCGAGGTCGTCGCCGTGG 347511 30 100.0 39 .............................. AGGAGGAGGCCTGGCGGAGGGTCGAGAGAATCCACATGG 347580 30 100.0 39 .............................. ACACACGAAGTTATTGCAATTTTGGCGTTATTGGTGGGG 347649 30 100.0 38 .............................. TTGGCTGAGCGTCGGTAACTTGTTGCGCTTGCAATAGT 347717 30 100.0 37 .............................. ATACTTGCCACCGCTGTAATACAGAACCTCGCCCGTG 347784 30 100.0 36 .............................. CACGAGGCGACAACTACTCGAATATAAAAGACAACT 347850 30 100.0 36 .............................. GGGGTCGAGTGATGAGCACGACGGCCAGAATGCTTG 347916 30 100.0 38 .............................. GTATAAGTAGCCGTCTCAATCCCTCGACTGCCCACCTG 347984 30 100.0 37 .............................. GTAGTAGCGTTATAGTCTATGCTGAGGCTGCTAACAG 348051 30 100.0 37 .............................. CTCTTCTTTATCGTGCCTATAATCGCTGGTAGCGTGT 348118 30 100.0 38 .............................. CTGTGCTTCTTGTAGATGGCCTCAAGGACTTCGTTGAA 348186 30 100.0 37 .............................. TCATTTCTGAGGGCGACATAAAGGCCTATAACTACAC 348253 30 100.0 37 .............................. GGCCGTCCCGGTGAGCGTTGCCGCTGAGACGGATAAA 348320 30 100.0 38 .............................. GCACTTCCGCGTCAATCCACCTCGGGTCGCCTGTCGTG 348388 30 100.0 37 .............................. AAGCTTAAACGGGGGTATCTCGTAAAAATCGCCGCCT 348455 30 100.0 39 .............................. ATCGACGAAAATTTAATAATCGGGCTGGTGGGTGGTTGA 348524 30 100.0 36 .............................. AGTAACCTTATCAGGTCCTTAGCCCTTCCCTCCGCT 348590 30 100.0 38 .............................. CAAGCTTTACATATGCCTCATTCCCCCGCCAGTATAAA 348658 30 100.0 37 .............................. TGTTGTACGTGAACATACCCTCTTCCATGGCATCAAG 348725 30 100.0 37 .............................. GTGAGCATTTTCATATTTTTGCCCTTTGTTATACAAA 348792 30 100.0 36 .............................. GCACGCTCAGCGGCGGCTACATTGCAATCGACAGCA 348858 30 100.0 36 .............................. ATGCCAACGTCAGCATGGAGGACGTTCTCAAGGCGA 348924 30 100.0 36 .............................. AGGAAGAGTTACATCATACTGGTGGACCCGGAGGTC 348990 30 100.0 38 .............................. GCGATCGGGTTTTCAGTCTTAATCCACACCACTAGGGC 349058 30 100.0 38 .............................. CTGAGTAATTTTAGGCTCGTTGAGGACCTCGGCGTCGT 349126 30 100.0 37 .............................. TCGTCGAGCGTTACGGGGTCCCGCTTCATGCTCGCGG 349193 30 100.0 37 .............................. AGACTGCATCAAGGAAGGCTGCGACAGTGACGTTTTT 349260 30 100.0 37 .............................. GTCATTGCGAGCATTGCGATGCTACCGATGACGAGGA 349327 30 100.0 37 .............................. GGTAGATAATCCAGAAAGCCCTGGCCGTCTCTGCAAG 349394 30 100.0 38 .............................. TTGCCTCGGTCGTCTGCTGTACGGTGATGTTATGTTGC 349462 30 100.0 37 .............................. AACAGAACCATCTCAGAGTTTGTCATGCCTATCACCT 349529 30 100.0 38 .............................. AGGGCAACGCTTATAATCAGTTTCAGCGCGTAGTTCGT 349597 30 100.0 36 .............................. CTTGCTTATAAGGGGCAGAATTCTACCCCTTTTCGG 349663 30 100.0 38 .............................. AGAGCGGTGCTTATCTTCTCTGGAAGCCTTGACTCTTC 349731 30 100.0 40 .............................. GTACCTGAGGCCGAACCGCCTCCAGCCCCCAAACCTTGAC 349801 30 100.0 37 .............................. GAAGTATCTCATCGAGAACAAAGACGCGTTGCGTGTT 349868 30 100.0 37 .............................. CAGTCGGGTCGCTCTTGCTCTCGTAGGCGCTGCCAAT 349935 30 96.7 35 ..................A........... GGTATAAGGCGCTGGACCAAATATCCTCTGACAAA 350000 30 96.7 37 ..................A........... GCGGTGGGGCAGCGAGGCTATGACTTCCCTGTTCTGG 350067 30 96.7 53 ..........................G... TCTATAAAACCCCGGCGGAAGTTCGAGGGGGTGTGGGGGACGGAACGTCCCCC C,C [350081,350091] 350152 30 73.3 0 CGGA...........C...GA..C...... | G [350176] ========== ====== ====== ====== ============================== ===================================================== ================== 41 30 99.1 38 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : GAATTTGAGGTCTCTGAATTTAACTTTTGTGGCGTATCACGCCTGGAACGCCTTATTCTTTGAAACGGGTCGTTGAAGGGACCAGAACCTCAAATAAGCCCTCCCCCATGCTCTGGAAATCGATTTTTAGGCTTTTTAATTTGTAACTTTTTGTTTCATATATTTCACGATCGCGTAACGAAATATTTTCGAAAAGTAAAACCGAGCCATGATTGGGCCTGGATATGCCACTTCCTTGAGGAGATACGTCCCTTTCCCATTCTGGCATTAGGTGCAGTCTGTTCGCGAATTTACAGCCCGTTTAACCCTTTGCATTACCCTGCAGTGTCCATCGGCCCCGTGGGAAGCTCCTTTCAGGAGCATTCTTTATGTGGGTTAAAGCACTGAAAAGTCTCGGATTCGAAGCCTGATGGGACCCTTTTTCCATCGGTTTTCAGAAAGACTTAAATATTCGAAGCCTCTCAATACTCCAATGGGCAAACGGGCAAATTTTCCGCCCT # Right flank : CGGCACAACTGCATAATTAATGAACTGGTGGATCACATAAAAACTGAATTAACTAGTCTCAGTTGAAAGCGCCATCTCGACGATTCTCTCGAAGAGCGCCCCGTGGTTCCCGAAGGCCTCGAACATTCTTCCCGAGTAGTTCTCCGAGGCGGTCTCAAGGAAGTGCCGGAGATTCCGGCCGATCTCGTCGCTTATTGGGACGTGGAGCGGAGAGGGCTCATAGTAGTCAAGTCCCTTCATCAAGGCCGTGGAAAAGTACCAGAGCGTCTTTCTGACTTTCCTGCCCTTTATCCTGGAAAAGCTCGCCTCCATGCAGTTAAAGGCCGCGTGAAGGAGCACTATAATGTCCACCTCCACTCCCCTCTCCAGGAGCTTTTTCCTTTCCCGGTCGCCGCGGAGGTCCTTTATCCTGTACCCGCTCCTCGTCTGCTCGTCGTAGGGAACCTCGACGCCGTAGATGCCCTCGATCCTTGGGTCATAGACGAGGACGTCCGTGCCGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 1697106-1697296 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 1697106 28 100.0 50 ............................ CTGAACACTACACGGCTGTAGTGAAGCTCTCCCTTTGCGCCCACGAGGCG 1697184 28 100.0 57 ............................ AGGTGCTCGACGCTCTGTATCGGGCCGTCCACCTCGACCTCCTTCACAATCTCCCCA 1697269 28 92.9 0 ..........................CT | ========== ====== ====== ====== ============================ ========================================================= ================== 3 28 97.6 54 GTTTCAGAACCACATAATGTTTGGAAAC # Left flank : AATGCTTTTCTCAGCCAGAAGAGCCCTAAAACGGCTTTTCGCTTTTTTACGTTACATAGAAGTAAAACCGTGCACGCGTTTGAAAACAGAGCGTTATAACTCTTTTATAAACCGAGAAAGGCCCTGAAAATTCTCCCTCAGCTCGGAGGAGCGTTTTCTACCGTTTTCCAGACGGGCCCCAAACGGGGCTCTCTGCCGTCTCAGTTGAGCTTTCGGAGGCTTCGCGAGGGAGTCTGGTGGAGTGGTTTCCGCTGGTTAGCCTTTGTTTTCCCCGGGAGAGGTTTAGCCTGCCCCGCTGGTCCTCTCCCTGGCGTTATCTCCTCCCCTGGTTTGTTGGGGCTTTTTCTTTCTTTTTCGGTTTTCTTACTATTTTGGATGGTTTGTGTTTGGAGTGTTTGGGGTTTTTGTTCTGGTGCTGTTTTCTGAACTTCTGGTAACCGCAAAATTTATATGGGGGTTTGGCGTTACTCTATTTGCTCAATAGGGCAAAAAAGTTAACC # Right flank : TCCGTGGCCGGGGTAGCCCCGCCATAAGAGATTGATAAAAAGAGGGTGGCTTATTCTCCTCTGTATGCCCTCAGGTAGAGCTCCCTTATCTCATCCGGCTTCGGCTCGACGGGATTGAAGGCAACGAGCCCGTCGCGGTAGGCCTTCTCCGCCATCTCGTCCAGCTTTGCCATGAAAGTCTCCTCGTCAACGAGCTCGCTCAGCCTTGGAACGCCCGTTCTCTCGTTCAGCCCCCTGACGGCGTCAATGAGTTCCCTCCAGTCCCTTAAGCTGAGCTCCCTCGCTATCTCGTCGTAGCGCCTCCTCGCGTAGTCGCTTTTCGTGGCATTGAACTCCATGACGTAGGGTAGGAGTATCGCGTTGAGGAGGCCGTGCGGACCAATCCACGCCGCCTTGTGGCTCATGGCATGGCAGAGGCCGAGGCGTGCGTTGAGAAAGGCTATGCCCGCCATCGTTGAGGCGTAGTGCATCCTCTCCCTCGCCTCCCCGTCGCCCTCCAG # Questionable array : NO Score: 4.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.10, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 5 1710077-1709530 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================== ================== 1710076 28 100.0 49 ............................ GAGCAGTTATCAACTCTAACTTGGTTGGTGACATTTCGCTTGGAATGAT 1709999 28 100.0 49 ............................ CCGAGGCGCTCTCCGTTGAAGAATCCTACATTACCATCAACTTTCACGA 1709922 28 100.0 59 ............................ CCACCAATACTGAACCCCTTAATTTTACCCTCTTTAATAGCCTTCCAAACTTCATCCGC 1709835 28 100.0 38 ............................ CTCCTTAGCAAAACTGAGGAAGCTTATCGCACTCCCCG 1709769 28 100.0 39 ............................ AGTTTGAGCGTTACCGAACGCTTCATTTTAAGTTATGGT 1709702 28 100.0 49 ............................ ATGTCGGGGAGCTCGTCGAAATCGTCTATTGTATTCCTGATTTCTTCGA 1709625 28 100.0 40 ............................ CTACGTCACTTTTCGTGTGTGCTTTGTTGCTTACAAGGAT 1709557 28 92.9 0 ..........................GT | ========== ====== ====== ====== ============================ =========================================================== ================== 8 28 99.1 46 GTTTCAGAACCACATAATGTTTGGAAAC # Left flank : AACGCTTTTCTCGGCCAGAAAAACGCTAAAGCAGATTTTCCCATTTTTACATTACATAGAAGTAAAACCGTGCACACGTTTGAAAACGGGGCGTTATGACTTCTATATAACCATAGAAAGGCCTTGGGAATTCCCCTTTAGCCGAGGGGAGCATTTTCTACCGTTTTCCAGACTGACCTCAAACGGGGCTCTCTGCCGTCTCAGTTGGGCTTTCGGAGGCTTTTCGCGGGAGTCTGGTGGAGTGATTTCCGCTGGTTGGTCTTTGTTCTCCCTGTGAACCGTTTAATCCGCCTCGATGGCCCTCTCCATGGTGCTGTCTTTCTCGTTAACTTTTTGGGGCTTTTTCTTTCTTTTTCGGTTTTCTTACTATTTTGGATGGTTTGTGTTTGGAGTGTTTAGGGTTTTTGTTCTGGTGCTGTTTTCTGAACTTCTGGTAACCGCAAAATTTATATGGGGGTTCGGCGTTACTCTATTTGCTCAATAGGGCAAAAAAGTTAACC # Right flank : TCCTATTTGTTTTTCTTGCCCAATCTCTGGGCTCTTCCTCTGCCCTGAAGGAAGGGGCTTTCAAAAAATGTGGTTCCCACTATTATAAAAACGGAGAGCTCACCCCACTTCCACGACGTACTTCCTGTTCCCCTCCTCAAAGCCCCTGAATGAGCCGAGTTTGAGCCCCAGGAGAGCCTTCTCGACCTCAACGACCTTCATCGAGGCCAGGTGTGTAACGCCGCTCCCCCTTAAGAACTCCGGGAGGAGCTGGCCGGTGGGGCCCGTCAGGACGAAGAGCCTGGCCTTCTTCGCCCTGTCCAGGAGCATGTCTATTGTTCCGTTCACGAGACAGCTCGCGCTCGCTATCACCGCGTCCATCTCGGGGAGGAGGTGGTATTCAAGGGCGTCGCTGTAGGTGTCCCTGTCCCAGAGCTTGGCGTTCCTCTCGAAGACGTACACCCTGTGCCCCTTTTCGCGGAGCTCCCTTACCAGGGGAGGCATGTTCCCAATCATCGCTA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 6 1723754-1722315 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1723753 29 100.0 36 ............................. TGTGACCAGGGACGGGCCGACGTTCCCGGTCCCGGA 1723688 29 100.0 36 ............................. ATAGAATTCGGGACGTAGTTCCGCCGGAAGTGAAGG 1723623 29 100.0 37 ............................. ATGACCTTCTGCCTGTAAACGTTCGAGTAGAAGTCAA 1723557 29 100.0 36 ............................. TAATCACCTTCTCAGCATGGACCCGGACCTCGCGGA 1723492 29 100.0 37 ............................. AGCTCGTTTACCTCGGTGGGGCCGTCCCTGAGGTCGT 1723426 29 100.0 38 ............................. AAGAACTGCCCCCTGTAGAGAAGGAGGGTCGCTCATGA 1723359 29 100.0 41 ............................. ACGGCCGCGCTGGAGGGGTAAAGTTCCACGTTCACGCTCAT 1723289 29 100.0 38 ............................. TGCTCCTGACATATATACTGATCTTGCTGCAACAATAA 1723222 29 100.0 38 ............................. AAGGTGGTGGGCATGATGGAGGTCGAGAGGGTCATACT 1723155 29 100.0 37 ............................. ACGTCAAAGAGGCGGGTGCTCATGTCTTCACCTCCTT 1723089 29 100.0 39 ............................. ACCTTTTCAGCCTCCATTCTTCTCAACCTCCTCGAACAT 1723021 29 100.0 40 ............................. TCGATTTCGAAGTCGAAGAGGAGGACGAAAACAGCGTTTT 1722952 29 100.0 41 ............................. CGTGAACTGGACGGGGATTAGCAACGGCACGTGCAACTGCA 1722882 29 100.0 37 ............................. TTGTCGTCCGGAATCTTGAAAGCCCCGAATTTCTCTG 1722816 29 100.0 38 ............................. TTACTTCGTCCAGGTCGGCCAGGAGCGGTTTGTGATGT 1722749 29 100.0 36 ............................. GGTTACCTTGGGCCTTCCTCCGCTCTAATCACTTCT 1722684 29 100.0 38 ............................. CACTCTCAGCGAGCTGATTGCCTCAAGGGCTTCTGTGC 1722617 29 100.0 40 ............................. TCGTCATGTTCGCGAGCGCTGAAACGTTCTGATTCTGCCC 1722548 29 100.0 40 ............................. ACGAACCCGGGGAGTACGTACTCTTCCTTGACGTCCAGGA 1722479 29 100.0 38 ............................. TCGAATTGTGTAAGAATGAGATCCCATGCCTTGACGAA 1722412 29 96.6 40 ......A...................... GAAAGCATTGTCACGTCAAGATCGTTGTCTGCATCGTAGA 1722343 29 96.6 0 ......A...................... | ========== ====== ====== ====== ============================= ========================================= ================== 22 29 99.7 38 GTTTCCGTAGGACAGAATTGTGTGGAAAG # Left flank : TAGCACCGAACCGATTGAAACGCTGTTAAATCACTTTGAACCGCCGATTGGCTTTCAGTCTTGCTTGTTCCCTATATCCAACCCCATAACTCTCCATCTATCGCCAAGAGCCCCACCAAATCCGTTCTTGATTCTTGATGAGAACGACGTCGAAGGGTTTTGCGAGTGTAAAATTAAATCGTGCTTTGAGTGCTCTGGAGGGTTTGTGTGTGGTTTAAGGCATTTTTATGGGAGTTTGAATGGTCAATCGGGTTTAACGCGGGGTTTTATTTTCCCTGCTCTTGTTTTAACCCGTTGAAACTCCTGAAAGCGGTTTCGATTTTTTCTTTTTGCTTTTGGATCATTGTAAGGCTCTCTTCGGGTGAAAGCAGTCCTTTCGACGTTTCCCTATTCCTGTGCCGGCTTTATAAATAGAATGCGGTGACACGGGTTTTTAGAACAAGGTTTAAATAGCGGTGAAGAAAGAACTTAAAATCGAGAACCCGGGGAATTCCCGGAGC # Right flank : GGAGTCGTCGCGACGATCGCCCAGCTAGGGCCAGACGGTTTCCGTAGAAGTGGTGCACGGTTGTCGCGCTGTGTATACTCCCAAAAACCTTTTCTGAGAAACTGCACATTGTGGGAATGACTTCCAGCGGCCCTATCCGGGTGATCTAAATGGAGGTTTACAAGGCCAAATTCGGCGAAGCAAAGCTCGGCTGGGTCGTTCTCGTCCACGGCCTCGGCGAGCACAGCGGAAGGTATGGAAGACTGATTAAGGAACTCAACTATGCCGGCTTTGGAGTTTACACCTTCGACTGGCCCGGCCACGGGAAAAGCCCTGGCAAGAGAGGGCACACGAGCGTCGAGGAGGCGATGGAAATAATCGACTCGATAATCGAGGAGATCGGGGAGAAGCCCTTCCTCTTCGGCCACAGCCTCGGTGGTCTAACTGTCATCAGGTACGCTGAGACGCGGCCCGATAAAATACGGGGATTAATAGCTTCCTCGCCTGCCCTCGCCAAGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACAGAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 1740929-1739834 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1740928 29 100.0 39 ............................. TAAGTTCCTCATTCGTCGGCGTTCTCCCGTCGTTGTCCG 1740860 29 100.0 36 ............................. CATAGACGGAAAAAGCACGCCTGTTAAGACTGTTAC 1740795 29 100.0 38 ............................. TCGCAAGGCCGAAGGCCGCTATCGTGGTGATGATGCCC 1740728 29 100.0 36 ............................. AAAAAGGAGGGGTATTCTTGGCCACCTGTGAAACCG 1740663 29 100.0 38 ............................. AACTTCGCTTCAACTACCTGCCACTGGACTGGTATCCT 1740596 29 100.0 38 ............................. AGACTTTTTACCTGCCGTTGAAGTTCCTCATACTCCTT 1740529 29 100.0 36 ............................. ATCCCTCTTCAGAACTCCCAGCTCCTTCGCTATGAG 1740464 29 100.0 36 ............................. GAATTAGGGCTTAGTTTCCGTAATTGATTTAAATAC 1740399 29 100.0 38 ............................. ATTCTGCGAGAGCTTCTACTCCAGTCTCAACCCCAACA 1740332 29 100.0 39 ............................. CTTCTTCAGTAGGCATAAGAAAGTCCTCCAGACTCATTC 1740264 29 100.0 41 ............................. CAGGGCGTGAGGTGATGATGGAATGAGGCGCTTCATCTCTT 1740194 29 100.0 37 ............................. CTGTGTTTCTTTGTCAATCTGCTGATCCTGAGGCTGA 1740128 29 100.0 38 ............................. CTTTATCACCCCCGGAAACACATCTTCGTTCTCTGCAA 1740061 29 100.0 36 ............................. AACTCGTTGAAGCCAATTTCAAGGCCTTGGAACTCG 1739996 29 100.0 38 ............................. CCCACCTCCTTGAGTGCTCCCGCGCCCACCACCAAGCT 1739929 29 100.0 37 ............................. GCTACACCCCTAAAGGGGGGTCGGCGAAAATTCTTCC 1739863 29 86.2 0 .......................A..CCT | C [1739838] ========== ====== ====== ====== ============================= ========================================= ================== 17 29 99.2 38 GTTTCCGTAGGACAGAATTGTGTGGAAAG # Left flank : TAACACCGCTCCAGGATTTCTCTTTTTCTATCGGTTTTCACACCTGAAAACGCGATGACAACGATTTGATTTTGGAAAATGTAGCTAACTAGCTTTTATCGCCTCCAAAATCCCCAAAACGGGTATTTGAAACCTGTGTGAGAAATTTATCGAAAGGTTTTACACATATGAAACAAAATCGGAATCCGGGGGAAGATGTGGCTCCAGACGGCAAAGGGGGCACAAAGAGCGGAGTTTAGATGGTAAAGCGGATTCAGGGCAGGGCCAAATCTAATTCTGCTGGAGAATACTGGGTTAATTTAGATAAGAAGGTTTTCGATTTTTTAATCAGGGATAAAAAGTCCAAAGATCCTTCTGTGTGGGCAACGGGGGCTTTAACACCTTTTTCATTTCGTGTGTCGGATTTATAAACCAACTGCGTTGCCACAGGTTTCCAAGACAAAGTTTAAATAGGAGTTGAAAAACCAGATATTTTGAGGATCCGGGAAAGTTGCCCGAGG # Right flank : CTCGGCGTTTTCTTTTCTTTTGCTACCGTGCCCGACGGCCCGAACAGCGCCTGTGGGTGATCCCATGAAGCGTCCGGTTTACATAACCCAGATGGGCGTCCTTGAAAGGAGGGGCAACACGCTCTTCCTCGAAAACGAGAACGGAAAGAGGGCCATACCCATAAACTCCACCAGCGAGATACACTGCTTCAAGCCCGTCAGCCTGACGAGTGGGGCGATAAAGCTTCTCTCCGAAAAGAACGTCCCGGTTCACTTCTACAACAAGTACGGCTACTACAGGGGTTCCTACATGCCGGTTGAGGGACAGGTGAGCGGTACGGTTGTGGTGAAGCAGGCGGAGCACTACCTCGATACCGAGAAGAGGCTCTACATAGCGCGACAGTTCCTCGAGGGGATAAAGGCCTCGATGATTGCCCTCCTCAGCTCCCGGCGGGCGGAGCGGAGCACGATAGAGGGAACGGAGGTTGAAGGGGACAGCCCCGCGGAACTGATGGGCGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGGACAGAATTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 8 1746370-1745414 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1746369 29 100.0 34 ............................. GAAAGAGGAACCCAATACGTAGCCAAAAACTCCC 1746306 29 100.0 37 ............................. TAATATAGTCTCCATCCCAGATCATGAACTTTGGAAC 1746240 29 100.0 37 ............................. ATATTATTAGGGAGTTCGGTAGCGGGAGCGGTCTATG 1746174 29 100.0 39 ............................. TAAGCAACCCATCTCTTAAAGCAAGTCGAACACTTACCA 1746106 29 100.0 36 ............................. TTGCATTGTCACCACCAAGAAGCCCTGCGACATCAA 1746041 29 100.0 36 ............................. ATCTCTGCGACCAGTCTTCAATCGACGACGTTTTCA 1745976 29 100.0 38 ............................. AGGAAATCCAGAACCAGTTGAACGCGGCTAAGAAGGAG 1745909 29 100.0 39 ............................. ACTCCCCACCGCAGACAGGACACTTCATTGTAATTCACC 1745841 29 100.0 35 ............................. CCCTTCAGAACCTCAACGGCCACCCTGAGGACAGA 1745777 29 100.0 40 ............................. ATGGAAGTCAGCGGTATCTCCTCGCTCTCGAACCTCGGAG 1745708 29 100.0 37 ............................. CCAATCCAGAAAAGCGAGATATGGGCAATCCAAAGCA 1745642 29 100.0 38 ............................. TCGTCGGGAAGATGCGCAATGTTCAGCCACTTGCCCGA 1745575 29 89.7 38 ..........G....AA............ AAGTCCGGATTCGTGAGGAGAGTCACTCCACCAACTGT 1745508 29 100.0 37 ............................. ATCAGGAACAGGCCTGCCAGGAACATGAAAAACAGGC 1745442 29 89.7 0 ...............A.C...A....... | ========== ====== ====== ====== ============================= ======================================== ================== 15 29 98.6 37 GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Left flank : ATGGGATTTCGAGGAGATTTGGCACCGGTCGAGTTTCCTTTCGAAAAATAAAGCTCTGTTCACCCTTATCCCATAGAGCACGGAATTTGAAGGGCTCTCCCCAAGAATCCAAGCTCCCCAAGCAGAATACCTTCTGTGATTATCCCCGGAGTGGTAAGTCCAATGCAGATGCATACGTTTTCCAAAGCGCCGGGAACAGTGCCCCCTCAGCACGACAGGGGGATTTCGGGACAGATTAGATAGTAAAGGAGCCCCGCTTCTGGCTTTAATGGCTCCTGGAGGCATTAACCGATGACAATTCCAAAACAGAAGGTTTCGATTTTCCCATCGTGTGGGACAGTGGCCGAAAATGCCGAACCGGTGAAAAGAAAAATGGAGGTCTCTCCGCAGTTTTTGTGCCGGCTTTATAAATAGAATGCGGTGACACGGGTTTTTAGAACAAGGTTTAAATAGCGGTGAAGGAAGAACTTAAAATCGAGAACCCGGGGAATTCCCGGAGC # Right flank : TAGTGTTACTCGTAACCAGCGTGTGGATTGTTGAGGTTTCGCCCCGGTTCCCTAAAGCTAGCGCGCGGAAGCCGGCTCTCACGCCGGGTTGGCATTACTGACATTTTCTTCATGTTTTATGTTTAGTACCGCGACCGGTATGGGAGTGAAACTTACAAGCGGTTCAAAATCTTTATAAGTGCCAGTGTTGTTTATCACTCTGTTAGCGTTCCCGGGTGTGCATAATGCGGCTGAAAATAACCCTCGAGGGTAACAATGGGGTGCCATATCAGCCCAACAAGCACGCTGTCCAGGGGTTCATCTACAACATGTTGAAGGACACGGAGTATGGAAAACGCCACGACGAGCCGAGGTTTAAGTTCTTCACGTTCTCGGACTTCTTCAGGGACAGGGAGGGAAGGCTGACCTTCCTCGTGTCTTCTCCGGAGAGGGGCTTCATAGAGACACTTTACTCGAACATCAGGGGTAGGAACCACATCTACATCGGCAAGCACCAGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 9 1868115-1868602 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 1868115 28 100.0 57 ............................ GAGCTAATGAAGCTTCTGAAGGAGTTTAACATCACGAACCCCCGCACCCAGCTCCCA 1868200 28 100.0 53 ............................ TAACCCAGCTTGACGAACTCCTCTGGAGGGAGTGTTTTGTTGTCAATCCACGA 1868281 28 100.0 47 ............................ GTCCCCCCTTCCAGCGATGCCGTCACAATCTCGGGGTTAAGGTTCAC 1868356 28 100.0 36 ............................ AGCGCCTTGAGGAGCTTAAGCTCCTCGTCGACTATG Deletion [1868420] 1868420 28 100.0 53 ............................ TCGTCCATGGAGCCACTGACGTCGACGAATACTATGAGGAGTGGCGCCTTCTT 1868501 28 100.0 46 ............................ TGGGCCAGGTACTGTAACCACAGGTTTTTGTCGAACCTGATGTTGA 1868575 28 89.3 0 ...............A.........CG. | ========== ====== ====== ====== ============================ ========================================================= ================== 7 28 98.5 49 GTTTCAGAACCACATGATGTTTGGAAAC # Left flank : AACGCTTTTTTCAGACAAAAAAGCCGTAAAACAACTTTTCACCATTTTACGTTACATAGAAGTAAGTCCGTGCACATGTTTGAAAACAAAGCGTTATGACACCTCCACAACTCGAAAGAAACCCTAAAAATCCCCCTACAACTGCGAGGGGAATTTTCTACCGTTTTCCAGACGGGTCTCAAACGGGGCTCTCTGCCGTCTCAGTTGGGCTTTTGGGGACTTTTCGCGGGGGTCTGGTGGAGTGATTTCCAATGAACGGCGTTTGTTTTCCCCGTGAATTGTTTAGCCTGTCCCGCTGGTCCTCTCCCTGACGTTATCTTCTTCCCTGGTTTGTTAGGGCTTTTTCTTTCTTTTTCGGCTTTCTTACTAATTGAAGTGGTTTGTGTTGGGGGCGTTTGGAGTCTCCCTTCTAGGGTTGTTTTCTGAACTTCTGATAACCGCAAAATTTATATGGGAGTTTAACATTACTTTATTTGCCCGAAGGGGCAAAAAAGTTAACC # Right flank : CTAAAATCTGCGGTATCGGGAGATGGGGCCTTAAGCGCCCCCGTGGGAGGTTTGGTGTGTTCTGGAAGCTTTCCAGGTGCGTCGTGGCCTCGAAACAAGAGGGCATCTTCTCGCGGTGGCGGGGCCGGGTAACCTTGAGACACCTTCCTCCTGCAGTGTTTCCCAAAAACCTCTCTCACGAATTACAACTCCGCTGAATTGGACTCATAGCCCTGCAATTTTGAAGTCGGGAACGATTTTCCTTAGGTTCTTCGCACCAACCCGGACCGAAAAACTTTTTTATCTGATGCACCGTAGAAAATACCCGTGTCCCATTCAGGTGATCAATGCACCTTTCAGTTGGGCACTTCTGTCGCCCGGCTAGGGGGTGATGACGGTTGAAGCAGGACGTCGAAACGCTGGCCCTCGCCGCCGCCCTTCTGCCACTGGGCAGGGTGCTGTCGAGGGCGGGCCGCGGTTCCCCGGGAAAGGCGGGGTTCGAGTTTCTCGTTGGGCTTTCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATGATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 10 1877271-1878431 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 1877271 28 100.0 47 ............................ CGACATTTTTCTGCCTCCCAGATCTTATCCACAATACTACACGCAAC 1877346 28 100.0 47 ............................ AAAAGGGGGCCCACTACAAAATTCCTCATGGTTCACCCCTCCACAAA 1877421 28 100.0 43 ............................ GAACGGCTCATTCTCGAAATACACACCCGTGACGGAATTATAA 1877492 28 100.0 54 ............................ TGGGGAGCACCCCGTCAACGTTACCGTCGTTGAAGTCTATCGTGACCCTACCGT 1877574 28 100.0 52 ............................ GACACCCTCAATCTCAAACTCAACGAGGGTGTAGTCCTTTCCTTCTTCTTCT 1877654 28 100.0 49 ............................ CCACGCTGACGATATAGGACACAACCTTACCGAGTGGGCTATCCGACTT 1877731 28 100.0 51 ............................ CATCCTTGAATAGTGCAGCGAAAGTTATTTCGACACGGTCCCAGAGCACAA 1877810 28 100.0 52 ............................ CGCATTCTGAAATCTCTGGAGAGCATGCAAACCATATGTTCCCCTCGGGATC 1877890 28 100.0 58 ............................ TCGATGCTGCTGACAGCGTCGTGGACCTCGCCGTAGTGGTAGTTCCTGTTTCTCAGGA 1877976 28 100.0 36 ............................ TCATGATTGGAGCCAGATTACCAACCCGCCCTCCGA Deletion [1878040] 1878040 28 100.0 40 ............................ ACCCTACCGCGGCGGTAATAGATTACCTCCCCCTGAATGG 1878108 28 100.0 46 ............................ GCTATGGCCAATATGAACGGTACAACGTACGCCAGGAACATGTTGA 1878182 28 100.0 47 ............................ CTTTGATGTGCGGACTTCCGACGGAAAAACCTTCGACATTGACCCGT 1878257 28 96.4 54 ......................A..... CCCACCGCGCTTCCGGTGTTCATCGCGAGGTTTCTCGTCGAGACTATGCGGGCG 1878339 28 100.0 35 ............................ TTGCTTGGCTCTTTGACTCACGTAGTTCACACGAT Deletion [1878402] 1878402 28 92.9 0 ........................C..G | CC [1878425] ========== ====== ====== ====== ============================ ========================================================== ================== 16 28 99.3 47 GTTTCAGAACCACATAATGTTTGGAAAC # Left flank : AACGCTTTTTTCAGCCAAAAGAGTCCTAAAACAGCCTTTCACCTTTTTACATTACATAGGAGTAAGTCCGTGCACGCGTTTGAAAACGAGGCGTTATGACACCTCCACAACTCAAAAGAAGCCCTAAAAATTCTCCTATAGCTGTGAGGAGCATTTTCTACTGTTTTCCAGGCGGGCCTCAAACGGGGTTTCCTACTACCTTTGTCTGGCTTTCGAAGGCTTCTCGCGGGAGTCTGGTGGAGCGATTTCCAATGAACGGCGTTTGTTTTCCCCGTGAATTGTTTAGCCTGCCCCGGTGGCCCTCTCCCTGGCGTTATCTCCTCCCCTGGTTTGTTAGGGCTTTTTCTTTCTTTTTCGGTTTTCTTACTATTTTGGGTGGTTTGTGTTTGGAGTGTTTAGGGTTTTTGTTCTGGTGCTGTTTTCTGAACTCCTGGTAACCGCAAAATTTATATAGGAGTTTAACATTACCCTATTTGCCCGAAGGGGCAAAAAAGTTAACC # Right flank : GGTTTTTATCCCGTGCTGTGCACCTTTCTTCAGGCCAGCGGGGGGAGCATTGTGAAGTATCCTCTCTTCATAACCGACCACGGGAGGCTTGAGAGGCAGTCCGGTTCCCTCGTCTTCGTCGGCAGGCTTGAGAAGAGAACCATACCCCTCGCCCAGGTGAGCGAGGTTCACTGCCTCGCGAGGGTCTCCCTGACGAGCGGGGCCGTTGAGCTGCTGAGCGAGAGGAGGATTCCAGTTCACTTTTACTCCACGCGGGGCGATTACAGGGGCTCTCTCATAAACGACGCGTCCCCGAGGGGCAGGCTTCACCTGGCCCAGGCGGAGCACCACCTCGATCCCGAAAAGAGGCTCTTCATAGCCCGGGCCATCGTCCAGGGGATGCAGAACGCGATGGCATTCACCCTCTCGCGCTGGGGCGTAAACCCCGTAAAGCTCAACTCCGTGAAGGTTGATGGGGGTAGCGTGGACGAGCTGATGGGGAAAGAAGCTGAGCTCTGGAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCACATAATGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 11 1949366-1950270 **** Predicted by CRISPRDetect 2.4 *** >NC_018015.1 Thermococcus cleftensis strain CL1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1949366 30 100.0 38 .............................. GCGGGCACTTCATCACCCGACCGCACCCAATCACCCAT 1949434 30 100.0 37 .............................. CACAGGGTATAAAGTCCGTGCTGATGGCGTGAACGTG 1949501 30 100.0 38 .............................. GGGGCGGGTGCTTGTATTCTCTATCATCATACGTAGGT 1949569 30 100.0 37 .............................. GAAATACTGAAAAGCTTTAACTGCCCTGCTTTTCTGC 1949636 30 100.0 41 .............................. GGGTAAGAGGGCTGAGGACAGATATAAGCGGCTGGTCTGAG 1949707 30 100.0 36 .............................. CAATAAGGAGAAAGCTAGAGCGTAAGATAGAGGAGA 1949773 30 100.0 38 .............................. AAGTGGGCGTGGGGTGGAACGTAGGGCGTCCGTGGGCG 1949841 30 100.0 35 .............................. TAGAGTTAGAGAACGGGTCGGCGGAAATCTACGTT 1949906 30 100.0 38 .............................. TTCAAGGCGTGTGTTGGCGTGGAGCCGGTCTTCGGCGA 1949974 30 100.0 37 .............................. CATGCATCAGCAGCCACACCTATCAGATATTTCAGCT 1950041 30 100.0 36 .............................. TGCCCAAAGTGGCTAGATTAGCCGAGGCGGCTAATT 1950107 30 100.0 36 .............................. ACAAAGGCAACAGGGATATATGGAACATGCACCCCC 1950173 30 100.0 38 .............................. TAGGGTGGGAATTGTAATCGACCCGAGTAGGGGGAGAA 1950241 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 14 30 100.0 37 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Left flank : AGTACAACCCGAGAATAAGGTACTGATCGGGTGTCATCACGTTTTTCTGCCCCATTTTAAGCACTCCGCCTTTAATCACAGTTTTCTGCCGAAACAAAGTTCTCAGCGGCCTTAGGAAACCGATTTTAGCATCTTTCAGACTGTAACTTTCTGTTGCATTCTAGTCAGCACTTGGTAACGAATTTTCTTCGAAGTTCTGAACAGGGGAAGGACGCTGTCGGGATACACTCCTTCCGTGCACAAACCGGTTCATTTTTGTCTTCCTGCCCTGCGAGAGAGTTTCCGGCGTTTTGAAACGCTGTGAACTAATGGGAGATCCCGTGAAGGTTTCTGTTCATTGGGAAGAAAACGGCCGGGGAGCGGTGTTTTGGTCCAAACGTGTTCACAAGCCCCTTGAATTCAGAACGTTTGAGGCCCCTTTTTCCGGTGGTTTTCAGAAAGGCTTAAATATTCGAGACTGCATAGGCTTTTACTGGGCGAACGGGCGGAATTCCCGCCCT # Right flank : GTGATATGGCGAAGCCTCTTTACTGTTGCAATAAGACTCTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //