Array 1 2264486-2264636 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIG01000001.1 Kitasatospora xanthocidica strain MMS17-GH009 DR950_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2264486 29 100.0 32 ............................. TGGCCAGTGGGAGAGCGGAGTTGGGCCATCAT 2264547 29 100.0 32 ............................. CTGTGGCGGGAGAAGCTGGCGGATCTGTGGCA 2264608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : ACCGCACCGGCCCCTACTCCTGGTGGTCCTACCGCGGCCGCGCCTTCGACAACGACTCCGGCTGGCGCATCGACCTCCAGGTCGCCACCCCCACACTGGCCACCCGCGCCACCGACGCCCGCGTCGAGCGCGCCGACACCCACGCGGAGCGCTGGTCCGACCACGCCCCGGTCACCGTGGCCTACGACGTGGACAACTGACCAATACATAGCACCACTTGGGCAGGCTGGAGGTGCCCCGGTGCGCGGTTGTACCGCGCGCTGGGGCACCTCCTCACCCCGCCGTCCCCAAGCGTCTTCGACCCGGGAACCTCCACCGTGCCCCTGGTCAGCGTCAGCCCGCCTGCGAAGTCCCGCTCGCCACTTGCCATCCAGTCCACCATCACCACAAGGCCAGCCAACTCCACCACCAACTACCCATGAGCTCTACTATGGATAGCCAACCGAATCGAACTGAATCAAATAGCGCTCGCTGAAGCGAATCACCGCAGGTCAGCAAGC # Right flank : CTAGAGGACGAAGACGCCGTTGTCGTGGCCGCCGTCGGCCCCACGCTCGCCGACCACGAGCGGCGCCTGGTCGAGCCCGGGCTGTGGCCGACGAAGTGCGGTAGGCCGATCGCAACGGGTGCAGCGTCGTCGGGATCGTCTCGGGGCTGCTGGCCGCGCTGGTGACCGTCCTTGCTGCGCTCCAGCCCTGAACTACCGCGTCCCCGCTCGGCTTCGGCCGGGCGGGGACGCGTTCGTCGTGTGGTCGGTCGGCAGCTAACCGAACGGCAACGTCGCGGTGCTGCGGGCGGTCAGGGTACGCGAGTAGTCGGCTGCCGAGGCCGTCAGGGCCCGGTAGTTGATCACCGGGTCACCTGCGGCGACCAGGGCGGTGGCGCACCCCAGGCACCACGGCCGAGGGGGGTCCACGTCCAGGTCCTCGATGACTGCATCCGCTGTGCAGCACTCGGCGCAGATCGGCATGCTGCCGCCCTCCTGCTCGCTCAGGCTCAGGTCGAGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2278700-2278850 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIG01000001.1 Kitasatospora xanthocidica strain MMS17-GH009 DR950_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2278700 29 96.6 32 ............................T GGCGGCGGCCGGTCCACCGGCTGCTCGCGGTC 2278761 29 100.0 32 ............................. CCTTCGGCGCTCACTCGGTGCCCTCGTCGACC 2278822 29 96.6 0 .........................T... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : GCTCAGGCCCGCCTGGCGGACCGCGGCCTCGCCAGCGGGGTCGAGGCACTGGAACACCGGGGTGGCCTTGCCGCAGTCATGGATCCCGCACAGCCAGGCGAACAGCCGTCGCCCCTTGCCCGGCCCGCCCGCGACGGCGTCCAGACGCCGCCGCGTCACCGGCGGCAGGTATCGGTCCCAGACGATCTCCGCCACCGCCGCCGTGTCCAGCATGTGCGACAGCAGGAGGTTGACCGTCCCTCCGGCCCTGCCAGCGGACTTGCCCCACAGGGCGCCCAACCAGCCCTCCACCTCAGGCGGGTACCACTGCCAGCGGTCATCGACCATCGCCTCGACCTCCATGTCCGAGTACGCTTCGGAGCCTAGGTCGAGGCACTGACAATCCACCCTGGATTCACGAAGAGACAACGATCGGCGCATGAGGTCTGCTATGGGAAGCCAACCGAATCGAACTGAATCAACCGGCGCCAGTTGACGCAGATCACCGCAGGTCAGGAAGT # Right flank : CCTGGCCTTACAGGCACTCGTAGAAGGAAGTCTTCGGCGTGCGTCGGCAGGCGGGTGTAGAGGTCGCGGTGCAGGCTCTCGGAAGGTGCCGGTCGAGAGCGCGTGTCGGGGCCGGACGGCGGCCGCGAGGAGAGAGGTTCCGTGCAGGCGACGCTCGGCACCGTACGGGTGGGCGTGGCCGGTGGGGCGGGGTGGCTCAGTGGTGGGGTGGGCGAGGGTGGCGAGGTGCGACGCCACGGCGATCGGGCTAGGCATCGCTGCGATTTCGGTGCTGAGCTCGCGAGTGGCGCGGGTCAGGGCGTCGTCGGTGAGGAGGCGGTAGAGCAGGGCCGGGATGACCTCCTCGGCGATCGCGCTGAGGTCGGTGGTGGCGTAGGTGCGTTGCGGCCGGCGGCCCCGGTCCGCCGTGGCGCTGTGGGACTTCGTCCGGACTCCGCGGCGGGCTTCGGCCAGCGCGGGCAAGGCGGTGTCCAGGCGTCACACCTGCAGGGGCCGAGGCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2645947-2646692 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIG01000001.1 Kitasatospora xanthocidica strain MMS17-GH009 DR950_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2645947 29 93.1 36 .A....C...................... GGGCGGGTTCGAGTGGCTGATCCAGTGCTACCGGGA 2646012 29 100.0 35 ............................. ATCACCAGGACCAAGCTCGGCGCGGCCTGCTACGT 2646076 29 100.0 36 ............................. GCTCGCCCCGGCCGGTGTACTCCCACATCCCCCGGC 2646141 29 100.0 36 ............................. ACCGGATCTCGGCCCGACTCAGCGGGCTCTTCCTGG 2646206 29 100.0 38 ............................. GTTCTGGGCGAGGATCGCCCGGCGCACGCACTCGGCGG 2646273 29 100.0 35 ............................. GTGGTGGGCAGCGTCAGTGCCCGGTCAGACGGCCG 2646337 29 100.0 37 ............................. GTGGCCACCGGGTCGGTGGATTCCAGCAGCAGCCGGT 2646403 29 100.0 36 ............................. CGCCGAGGCGTGGGCCGCCGAGTGCCGGGAGGCCTA 2646468 29 100.0 36 ............................. CCCGGGGGTGGGGTTGTGACTGATACCCGAACTCTG 2646533 29 100.0 36 ............................. GGGGTTGGGGGTCTGCGACATCGGCTACTCCAGGGT 2646598 29 100.0 37 ............................. ACGCGGCCGCGTCGCCCGCCCCGGGCGCCCCGCTCAG 2646664 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 36 GTTGCAAGCCCTCCAGGGCTGATCACGAC # Left flank : CCCTTCTCCGACGGCTATCTGGACGGCGTCTTCTCCGTCGAGGCCGCCCAGCACTTCCGCGAACTGACCGGCTTCGCCCGCGAGTCCGCCCGCGTCCTGCGCCCCGGCGGCCGGCTCGTCGTCGCCACCTTCTTCACCGCCCCCGGCCCCGACGTCGCCGAACGCCTCAAGATCCTCCTCGCCAGCTTCGCCGACGGCCTCGACATCGCCCACCCCCTCGACGACTTCACCACCTCCCTCACCCGCACCGGCTTCACCGACATCACCACCGAATCCATCGGCGCCGACGTCTGGCCCGGCCTCGACCGCTACCTCACCGACGCCGTCCCCGCCGCCCACTGGACCCGCCACTTCCTCCCCGCCTGGCGCGACGGCCTCCTCGACTACCACGTCCTCACCGCCATCCGCATCTGACCGACAGTGGGCGGCCCTGGACCTGTTACGGGCCCAGGGCCGACCATGACGGCCGTCATGGTGGAGAACGTGCCGGAGTTCGCAAC # Right flank : CCCGAGGGTAAAGCCCAAGGTCAGCGCACCTACGAGCGTCGCCGTAGGCAGCGGAAGCGCGGCGACCGGCCGGTACTGCAACGGCACTGGTCACAGGATCTCGCCCGGCCCGCCGAGGGTGGCGCCGAGTGTTGCTCTGTCGATCATGTCCGGGGAGCGGGCGGTGTAGGTGACGATGCTGTCGTAGCTGGGGTCGATCACGCTATTGAGGGTGTGGGTGAGGGCGCGGTACTGGGCGGCGGTGAGTTCGCCGTGGAAGACGCTGCGCTGGGTCCAGTGGAGGTACTTGCGGCAGGTCTTCAGCACTTTCGGGTTGCGTTCGGCTGCGGTGTCGTAGACCAGGATGACGAACATCGGCGGCTACCACCAGGGCCGGAAGGGCTTGTACGGCGTGCCTTCCAGACACAGCCGGACGAGCTTGAGTGCTTCGAGGTGGATGAGCTCCTCGTAGCTGACCTTTCGCTTCAGCGTCCGGTGGTGCACCGTCGTCGCGAGTTCCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGCCCTCCAGGGCTGATCACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 4 4164587-4165293 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIG01000001.1 Kitasatospora xanthocidica strain MMS17-GH009 DR950_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4164587 30 100.0 31 .............................. TCGCCCTTGTCGACGAGCCGGGCGAGGCGGG 4164648 30 100.0 31 .............................. GGGCCGTCGTGGTCGTCGGTGCGCAGGGAGA 4164709 30 100.0 31 .............................. TTACGTAACTTGCGCTAGTCGCCATCGTGGA 4164770 30 96.7 30 T............................. CCCTCCCACCTGCCGTTGCTGCGGGTGCGC 4164830 30 100.0 31 .............................. AGGCACGCGATGCTGGCCATGCCGAAGAGGT 4164891 30 96.7 31 G............................. CACGTCCGGCGTGCTCTGGCCGGCATCTCGT 4164952 30 93.3 31 ...A.G........................ GAGCTGACCAACGTGACCGCAACGAACATCC 4165013 30 93.3 31 ...AT......................... CCGGGACCCTCGTCGCCGTCGGAGGACTCGT 4165074 30 93.3 31 ...A.G........................ GCTGCCGCACGGTGTACCCGGACGCCGAACC 4165135 30 96.7 31 ...A.......................... GATGGTATTTCTGGCCAGATAACCCGCGCCC 4165196 30 90.0 36 AA...G........................ AAGGAGAGGTCGCCATGGACTGGACTGGCGTCACCG GC [4165206] 4165264 30 83.3 0 G..A.G................A...G... | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 95.3 31 CGTGCAGCCCGGGCGCGCGAGGGCTGACCG # Left flank : CTGTGGGACGGGCGCCGTACCGCCGCCGGCAACCACCTCGAACAGGCTGCTGGTCCCGGCGTCCGGTCTCGGCCCGAGCCCGAGCGCGTACCGGCCGAGCTGGAGGTCCGGGGGAACCAGCCACACGAACCGGCCGGACGCTCCGTCGACGGTATCGTTGATGGTCTGCACGGCGAACAGCGCGGTGTCGTCGCCGGTGAACAGCGTCAGCACCCGGTGGGCACTCGTGCCGCCGAGCCAGGTGATCAGGTAGGGCTCGCCCCTCACGACGATCCCGCCCGCCTCCGGCCGGACGAACGTGGGCCGAGCCGATATTTGTGGGGGACGGCCAGTCAAGCCGGCCACGGACAGGGCCGCCAAGCCGAGGCGTGGCAAGCCCCCAGGCACGCCATGGGTCATGGCCTCATTGAACGACAACACATCGCGGCACGTCACTCAAACCGGCGATTTCATCATCCAAACGGGCAAGCGGGCACTACGACCAGGAAACAGGGACGGCG # Right flank : GCTGGCCGCCCAGAGGCTGAAGTTTCACGGTTTCGGTGGCACACCAGCGTCCCCTGCGGAATCGTCGATGCCGGCGCCCCGCCAGGCGGGTGCCTCAGGCAGGCGGATCACTGGAGGGGTTCTATGGGCGAGCGGGAGACGTGGACGACGGACGAGTTCGGAGACTCACACGAAGGAGCCGTCGGCGTACTCCTGGCTGACGGCACTGTTCCCCGCCCCGCCTTCTTCCCCTCGCTAAGCCAAGGAGGCGGGCACACCACCTCTCAGTGGGACGTCTACGACGGCCGCCACGGCCTCACCCCGCGGGCACACGCGCTCCGCGCCGTCTGCTCCTGCGGCTGGACCGGCCCGGAGCACCAGGTCGCCTGGAACGGCGACGACGAGCAGAGGTTCGACGAGCCGGCTGACGAACTGGCGTACCTATGCGAACAGGAATGGGACGAGCACACCACCGAGGTCGAGAAGTCGGCCGTGGCCATGCCCGATGACATCACCGACCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTGCAGCCCGGGCGCGCGAGGGCTGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 7709659-7711861 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVIG01000001.1 Kitasatospora xanthocidica strain MMS17-GH009 DR950_1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 7709659 29 96.6 32 ...............T............. GCCTCGGCACACTTCGCGAGCTGGCCGGCGGT 7709720 29 93.1 32 T.................C.......... GTCACCTGCGGGCCGTTCGCGAACCCCAGCGA 7709781 29 100.0 32 ............................. CAGGGCATCACGCAGAACCTGCGCGGGCGCGG 7709842 29 86.2 32 ..A...........T.........C...T ACGTCGCTGAGGACGAGCATCCGGGGCACCCT 7709903 29 93.1 32 ................T...........A ACCCAGGGCGGCAAGGACCCCGCTGCGGAACT 7709964 29 86.2 31 ..TTA...T.................... GGTGCCAACGGCAAGAGAGTGCTGATGGACA 7710024 29 79.3 32 CAT.........T........T..C.... TACCTGGTCACGATCAGCACCAGGGCCGGAAG 7710085 29 82.8 32 C.............AG.T......C.... CCCGGTCTGCCTACTGGATCGACCCGACAGCG 7710146 29 93.1 25 ...A......T.................. TCGAAAGCCCCTCCGCGTTCGGCAG Deletion [7710200] 7710200 29 72.4 30 .G......TC.C.GAGT............ GGTGCCAACGGCAAGACAGTGTTGACGGAC GT [7710206] 7710262 29 79.3 32 CAT.........T........T..C.... CGAACAGTGGTCAGGGAATCGGCGGAGGAGAG 7710323 29 82.8 32 .....T..T............T.AC.... CGGCTCTTGGCGCTGGACAGGTCGACGAGCTG 7710384 29 89.7 32 .C......................CC... CGGGCCGTCGAGGCGATCCAGAGCTCGGACGG 7710445 29 89.7 32 ..........T....A........C.... GAACGGGCCTACCAGGCGAAGAAGTTGTGCGA 7710506 29 79.3 32 C.......TAT....A........C.... CTGCTGAACGTCTCGAAGATCATGGGCGAAGC 7710567 29 86.2 32 C.........A.............C...C GAGCAGTACGTCGCGCTCTTGGACTCGCTGAT 7710628 29 89.7 32 C..........A...G............. CGTCCTCGGCCGAGGCTTTCGGTGTAGGCCCA TG [7710633] 7710691 29 86.2 30 ..T........AT.............T.. AACCTCGGTGGAAAGCTGACCCCTCCGCTG 7710750 29 89.7 32 .C.T........G................ AACCGTTCTGCCTGGGCGAGATCGCGCTCGGG 7710811 28 89.7 32 .............-.G........C.... GGCACCAAGAGGGTCGTGACGACGTGACTCCC T [7710826] 7710872 29 86.2 32 .........A.A...A........C.... GCGCCGGCCGCCAACGAGGTTATGAAGTTCAT 7710933 29 82.8 32 C..G.......A.G..........C.... ATGATGGGCGGGGCCACTGGCCTCAACAGCGC 7710994 29 82.8 35 ............TT.G.....T..C.... CCCCTGTCTGCCCGCTGGGTCGATCCGACAGCGGT 7711058 29 89.7 32 .........A...G..........C.... AAGAAGGCGGAGCTGATCGACCAGGCGGACCA 7711119 29 93.1 32 .G..........A................ CCGGGCTGGGGGACGCGTCGTGCCTACCTCTC 7711180 29 72.4 32 ..ATC...G...T..G.....T..C.... ATGGTCGTCCTGGACTGCCTGCTGCACATGCA 7711241 29 82.8 78 C........A.....A.C...T....... GACCGGACGAAGGCGGACGGCTGGAGCGGTAAGTCTTCCCCGCGCGGCCAGGACGGGCGTCCACCCTCCGGGAGTGGG 7711348 29 86.2 32 ...T..........C.T.....G...... ACGTGGAGCCTTGGGCAGGTGTCCCACCCCTG 7711409 29 89.7 32 A..............G........C.... GACACCGTGGTAATCCGGGCGGACGTTGCCAA 7711470 29 100.0 90 ............................. ACAGCGCAGCGGAACACAAGGCCGATGACCGCGTCTTCCTCGCGCAGTCGGGCTTCGAGGCGCTCGCGCCAAGTTGGGGGCGCCGACAGA 7711589 29 82.8 32 ...T...T..T..T....A.......... ACGACCCACAGGCCAGCAAGGACGGCGTGCCC 7711650 29 79.3 32 ...T......TA...G........C...A AGGTGGAACCGGCCGGGGGACCAGGCGGGGGT 7711711 29 86.2 32 T.......T............T..C.... GAATTTCAGATCCGGGCAACGGACGGCAGCGC 7711772 29 79.3 32 ..........T.TG.T........C..T. CAGGCCCTCCAAGGCTGTGTGGACTCGGCGGT 7711833 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ========================================================================================== ================== 35 29 86.7 35 GTCCTCCCCGCGCAGCCGGGGCTGTTCCG # Left flank : CCCCACCACGCTCCCCGACCACTACGGCAACACCCGCACCCTCCCCCTCGACAAGCACCTCGACCGCCTCACCACCGGCCAGAAGATCCGCTACCGCCTCGCCGGCAACTCCGTCCGCTTCGCCTTCGACGAGATCACCGGCCTGCCCCTGCCCAACCGCATCCCCTGCAAGGGAGACGAGATCACCACCTGGTGGACCCGCCGCGCCCCCGAGATCGGACTCGACGTCGACACCACAGCCACCTTCCAACTCCCCACCGTCACCGGAACCCGCGAACGCAAACCCGGCTTCCGCCTCGTCCTCACCCGCTACGACGGCACCGCCACCATCACCAACCCCGACACCCTCCGCACCGCCATGCTCGCCGGCATCGGCCGCGGCAAAGCCTTCGGCGCCGGCCTCCTCACCATCGCCGCTACCCTGTAACCCAGGCGGCCAGAAGCTCCTTGACAACAGCAAAGAAACCGCAAAGCCACCGAAACACCGCAGGTCAGAAGGT # Right flank : GTCGTACCAGTACCTGTCCGGCGAACTGGGAGGGCCCTTGAGATGGGTCGGACCAGCCGTTGCGACGAGATTGAAGCGGGAGATTTGGGGACTTGCCGGGGACCACGCGTCGATCACCATGGTCTCGGAGGCGTCTCTCAGTGAACGAACAGCGCGGGCTGTCTACCGTCTGACGTGCAGCGATGGTTATGGCCGGGCGACTGGGGGTCAAGGGGTCGCAGGTTCAAATCCTGTCGTCCTGACAGTGATGTCGGTTGTGAGAGCCGGTACTTGGGAAACCGAGTGCCGGCTCTTTCTGTTGTGGTGTCGGCTGGTGGTCGCCGGACCGCATCGGCCAGGGTGTGGGCGGTCCTTCTGGTCGGCTGGTAAGCGGGCAGTTGCCGGTGGAAGTGCGGGCGCTGGGCGAGGCAGACGGGGTGGCCGAGGACGGTGTGGTCGGTGCTGTCGAGGATCCAGGCGATGGCGTCGAAGGCTGCGCGGGCGGCGGGTTTCGTGAACGG # Questionable array : NO Score: 4.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.34, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGCCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [34-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //