Array 1 211-4631 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPJF01000061.1 Halanaerobium sp. ST460_2HS_T2 Ga0255680_161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 211 37 100.0 36 ..................................... TCGCCAACTTGTAATTCATCTTTCTTTTTGAGTTGT 284 37 100.0 36 ..................................... TTCAAACAATTGCTATTCAATCTGATAATTTTAGCA 357 37 100.0 36 ..................................... TTATATAAATACCCGACAGAGAAGCAGGGCAATAAT 430 37 100.0 36 ..................................... ATTACAGTTTGTTTGAAATCTCCAACTTCAGTTATA 503 37 100.0 36 ..................................... TCCTTCAATCAAGAAGTCGGCTATGATGAAAAAGGT 576 37 100.0 35 ..................................... GAAAATTATATTGATATTTCTTCTAAAATTACATC 648 37 100.0 36 ..................................... TAGTTGGTATAGGATTGATAGTGAGCTGAAAGTTGG 721 37 100.0 36 ..................................... TTGATTATAGGAGTGGGAATAAAAAGGAGGTAGAAA 794 37 100.0 37 ..................................... AGAAAATAGTCTTGACTTATTGGAATGTGTCATATAT 868 37 100.0 36 ..................................... TCTTGCAGAAATTCATCTAACATATTTTCTGCTATT 941 37 100.0 37 ..................................... GCTTCTCTAATTCATGCTTATATTCATTCTTCTCTTC 1015 37 100.0 35 ..................................... GCTTCTGCGTCTGTTAGATCGTCACGCCTTATTAC 1087 37 100.0 35 ..................................... ACATTAACAAAATCCATAAACTTTTTAGATTTAAT 1159 37 100.0 36 ..................................... AATGGAATACTGACAAAAGCGATATTATCAGAAATA 1232 37 100.0 36 ..................................... GCTCTGGAAGTCTAACACCACCGCGATCAATTTCTA 1305 37 100.0 37 ..................................... ACAGGATTTTTTTCTTCACTCTGGCCACCTGCTGTAA 1379 37 100.0 36 ..................................... TTAACTAATATGATCGCTGGTAATATTCCAGCAGAA 1452 37 100.0 36 ..................................... ATCAGATAGCAAAAGTTTTTAGGATGTCCCGGCAGG 1525 37 100.0 36 ..................................... ATAGACAGGAGTGGGAAAATGATTTTATCAGATCAA 1598 37 100.0 36 ..................................... TTTTTTCTGTAATTGCTTCTCCTTTATTGAGTTTGA 1671 37 100.0 36 ..................................... GAGCTTTCTTTTTTTGAAACAGTTTCAACTATTTCT 1744 37 100.0 36 ..................................... CTACTGAATATCAAACTGAATCAACTGAAGAAGATG 1817 37 100.0 37 ..................................... GAAGATGAAGTCGGAATAGATGAGGCAATCGAGTTAT 1891 37 100.0 36 ..................................... TGCTCAATCCCTAATATTTCTTTAACTTGATTCCAT 1964 37 100.0 37 ..................................... TTCCCCTGGTTAATAAAGGAGGTTAATTATGTCTAAA 2038 37 100.0 36 ..................................... TGTTTCTACGCCTACGATTAAAGATGCTTCCAGAAT 2111 37 100.0 37 ..................................... CAGAGTAGTTAAAGTAATACCTAAAAGGTCTGTAGTT 2185 37 100.0 35 ..................................... ACATTCTGCAAATGTATATATTGATAATCTCCACA 2257 37 100.0 36 ..................................... GTTTGAGACCGGCCCCTACTACATTGGTCCTGTTGG 2330 37 100.0 38 ..................................... CTCTTTATCTTTGCGGTAATTACTGCCCCAGCATTAAG 2405 37 100.0 36 ..................................... TCGTGAAAATCGTGAAATGACTGGCGTAACTATTGG 2478 37 100.0 35 ..................................... GAAGAAGGTTCTATCGTTGTATATAGAGAGTATTA 2550 37 100.0 37 ..................................... AGCAAGGTTCATTTTACAAAAAAGGGAGTGCGTAATA 2624 37 100.0 36 ..................................... TATCCAGATTCTATAGAAGGAATCAATAATGAAACT 2697 37 100.0 35 ..................................... TCGTTGCTCAAAATGGAGCTCGTGTTGTTTTTAGA 2769 37 100.0 35 ..................................... GTAACAAAGGCTAACGAACCATACATATTCTCTAA 2841 37 100.0 35 ..................................... CCTTTCAAACTTTCCTTGACTGGTTGTTCACCCTG 2913 37 100.0 36 ..................................... GCTGTTGCCCGGCAGCTTTAGTTTATTTTTTCAAAA 2986 37 100.0 35 ..................................... TAAATGGCTCAAAATTATTTCCTGGTCTGGTCGGA 3058 37 100.0 37 ..................................... GTTTTTGAGGTCATTGCAATACCTACCGATGGCATAT 3132 37 100.0 36 ..................................... CCAACTGAGATGAGAAGAATAGTTGAGTATTTTTAT 3205 37 100.0 37 ..................................... GCTTTGGCGACTCAGTTCGCTGGAGAAACAGCACCAG 3279 37 100.0 35 ..................................... AAATCTAATATATCAAGTCTTTTCTATGATATTGA 3351 37 100.0 36 ..................................... ATAATTTTGTATTATTTAAGCATATTCAACATCTGA 3424 37 100.0 36 ..................................... TCAGTTTTTTTCCAATTCTGTGAATGTAACTGATCA 3497 37 100.0 35 ..................................... TGGTGATCAGGAATGTGTGAGATGTGGAGACAATT 3569 37 97.3 37 A.................................... TCATTGTAATATGATGTATGCAATATACTTGGCCTAA 3643 37 100.0 35 ..................................... TCAGCCTATAAGTTGAACCTGAACAGTTTAATCCA 3715 37 100.0 36 ..................................... CACTCACGGGCCAGAGTTCTCTGTCGATCATTTTTG 3788 37 100.0 37 ..................................... GTAGTTGAAGATGTAGAAACTAATATCAATGAGGGTG 3862 37 100.0 37 ..................................... GCCTCTTTTCTTGCTTCATGAGGTATATCAATAGTTT 3936 37 100.0 37 ..................................... ATAAACGGGCTGTTATTTATAAATGCTTAATTAAGTG 4010 37 100.0 37 ..................................... GAAAGTAAGAAAAAAGCAGCTTCCTGGAGAAGAATAG 4084 37 100.0 37 ..................................... TTTGATATTTAAATCTTGAATTTTCTTCCTCAAGTGT 4158 37 100.0 35 ..................................... ATTCCATAACCTTTTCAACAGAAAGTGATCAATTA 4230 37 100.0 36 ..................................... AAGCCATATTTAAAACAAAAAGAAAAAGAACTCATT 4303 37 100.0 36 ..................................... ATCTTGTCTTCCATGTTGGTGTCTATAGTGAAGTAA 4376 37 100.0 37 ..................................... TAAAAATCACATTTCATTTGTCCTTGTCCCCAAAATA 4450 37 100.0 36 ..................................... AAGGGGTAAAATTAAGTAGTGATATTGAACAGCAGT 4523 37 97.3 35 ............................A........ AGCTAAAATGACTCTTGAGAAGTCTATTTTTTTGG 4595 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 61 37 99.9 36 GTTCCAGTGACTAATCCATTAGAATAAGGATTGAAAC # Left flank : CGGTGAAACAACTCCTTTTGGTGTTTTTTGTCTGCAAACTAATTATACCAAAAGAAGGAGCTTGTTTCACCTTTTTTGCGTAATCTGTGGATAATTTATTTTAAGGACTTCTAAGAGCTAATTATCCACATTTTTTACTGTTGATAACTTTGAGTTTTTGCTATTTTAAAAAATGGGGAAACTACTTTATCCTGTTTAAGCCAATGATATG # Right flank : CGCATAAATATCAGCTATCGGATCCTAGCTATACTTGTTTCAGTGTTTTTGGCTGCCTAACATTTACTGCTCACCTTACTAGGAGACTGAAAGACTGAAATTCAAATTTCTTTTTTATCTTTCTTTTCATTCTAACAAAACTTTAATCTTAAGCAAATATAAATTTAATATAAGTTTGTTATCATAAATTTAGAATAAAAAAATTTAAGGAGCTGATAATGATGGCTTATATTAAACTATGTCCAGAATGCAGAAGTAGGAGTATTAGTGCCAGCAAAGAGGAGTGGATTTGTCCTCACTGTGGAACAGATTTATCAGATGAACCAGTATTTCGTCAGATTAAAATTAAGAAAAATTGGTGGGAGACAGAAAAATCTAAAAATAAAAAGAAAAAAGCTTTAGCTTAAATAAGTTTAATCCTGAAAAATCCTCCTTGTCTAAAATTGAAATTCATGATATTATAAAAGAAAAACTGTATATGATAATTTAAAAGTGACCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGTGACTAATCCATTAGAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 889-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPJF01000005.1 Halanaerobium sp. ST460_2HS_T2 Ga0255680_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 888 37 100.0 35 ..................................... TTCCAGATAACAAGACTGTTGGAATCTATGCTCAT 816 37 100.0 37 ..................................... GGAAGTCCTACTGGGCCAAAAGATAACCATTGACCGC 742 37 100.0 37 ..................................... ATAGTAACATCATAAATATTATATTGTAGTGGAAAGG 668 37 100.0 37 ..................................... ATGATGTAGCAGAAAGTATTAATTTGTTGAATTATAT 594 37 100.0 36 ..................................... GGTAGTAAAACTTCGCCTGCGTTTGCGCCATCTCTT 521 37 100.0 36 ..................................... ATAAGCTGGGCAACTTGTAAAACTGCCCCAAAATAG 448 37 100.0 37 ..................................... TCAACCTCCTGTATTTGTAATCCTGTCCATTTATCTG 374 37 100.0 36 ..................................... TATGATAGTGGCAGACGTTAACCAACCACTATTACT 301 37 100.0 36 ..................................... GTATTGGTTAAAGGTGAATTAAGACAGGATAGATGG 228 37 100.0 37 ..................................... CAGTTTGGAATATGTGGTTTGGAAAGTGTTTCAATAT 154 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 36 GTTCCAGTGACTAATCCATTAGAATAAGGATTGAAAC # Left flank : TCTTAAAAAGATTAATCATTGGTAATATACTGAGTTTTGCTAAGGGAATAGACTGGTGGATTGAAGAAGAGATAGTAGTGGAAGCAAAATTAGAGGAGGTGTCAGTTAAATTCAAAAATAAAGAGATGATTGGCTTTAAAGGTTATTTCTTCAGCAATATTTATTTGCCGGAATTTATAGGGTTAGGAAAATCTACTAGCAGAGGTTTTGGAACTATCAGTAGAGAAAAAATTCTTGATTAGGCTTGTTTTGAGACTAGAAATTTTATAAAATATAATTAAGAAAGAGTAAAAATTATAAATTCTGAGGCAAAATTATTTTTCTTAAAAGAACTGAACCTTGATAATCCAATAAATAGCAATTTGGTCAAAATGGTCAAAGTTGCGGGATTTGGTGTAATTATAGTTATTTTTATGGGATTATTTGAGAAAAAAAATATATAAAAATTCTAGATGAAATGCTATAGTGACTGTCATAAAGGTTAGTTTGAGTTATATCGG # Right flank : CTCATTGTCAATTATATCCTGTTAATGAGTTTCCCCATTTTTTAAAATAGCAAAAACTATCCTTACCGTCATAATGGTAAAGAGAGTCTTAATATCTTTTGTGATCGTCGTTTTTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGTGACTAATCCATTAGAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //