Array 1 8052-9361 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGG010000021.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
8052 29 100.0 32 ............................. TTGTTGCGCCACTAAACGCGGCCCCCAGCCAA
8113 29 100.0 32 ............................. CGCAATCCAGATTGGCAAATAAAATTAGGTGC
8174 29 100.0 32 ............................. TCGTTCGAGGCGTTTCGCGCCTGGGCGATTAT
8235 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT
8296 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC
8357 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC
8418 29 100.0 32 ............................. ACACCCGACCGCTAACCGATTTCGTTACAGTA
8479 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG
8540 29 100.0 32 ............................. CGCGTAAAGAAGGCGGCAGAAATAAAGTAATA
8601 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT
8662 29 100.0 32 ............................. GCCAGGCGGTCGGATTAGGTGCAAATCAAAAT
8723 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT
8784 29 100.0 32 ............................. TCGGGCGGCTCTGGTGTTCCTGACATGGCGGC
8845 29 100.0 32 ............................. AATTTGCATCACATAGGGGCGAGGCTCAGTGA
8906 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTCCACGTA
8967 29 100.0 32 ............................. AGTTAAGAGGGGGTTTTTCCCCACCGTTCAGG
9028 29 100.0 32 ............................. GTCATCACGATGAATCAAAATTTCGCCCGGCT
9089 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG
9150 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC
9211 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT
9272 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT
9333 29 96.6 0 ............T................ |
========== ====== ====== ====== ============================= ================================ ==================
22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACCTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 118330-118532 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGG010000002.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
118330 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC
118391 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC
118451 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT
118507 26 85.7 0 ................A...-A..-... |
========== ====== ====== ====== ============================ ================================= ==================
4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA
# Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA
# Questionable array : NO Score: 5.68
# Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 1 34162-34678 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSGG010000042.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
34162 29 100.0 32 ............................. GGCGCTATTAATGGTGGGCGCGCGTGGCTGGA
34223 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC
34284 29 100.0 32 ............................. GGGTTCTATTTCCTCGGGATTTGCCGACACGC
34345 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC
34406 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
34467 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC
34528 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG
34589 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
34650 29 93.1 0 .A..........................A |
========== ====== ====== ====== ============================= ================================ ==================
9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA
# Questionable array : NO Score: 6.21
# Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//