Array 1 1038-1244 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMBA01000092.1 Gilliamella intestini strain R-53144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1038 28 100.0 32 ............................ TTCTCGGCCCACGCTGAACGTAACCGTTTGTG 1098 28 100.0 31 ............................ TACAGCAATGGCTAGACGGAATAAATAACGG 1157 28 100.0 32 ............................ ATATGTACTGGGGCTTTTGCATTATTAGCTAT 1217 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : CAAAAGAATTCAGAAAATGGGTTCTTGATATTTTGGATAAAGAAACACATCAGCAAACTTTCTCCCCAACCATGGCCCATATACCACATCAAGGGCGTTGGGTAGTTCGATATATTGAAGACAAAGTAGAAGTTAAAAATATTGATGGTAAAGTTTGCATTGATAATACGTTGTTTCTTCAACTTCAAAAAGATTCAATTTATTACCGAAATAAATTGATTGAGTTGAATGATAAATTAAAACAATTTACTACACTAACAAATAATTTCATGGAAAGAACAAAAATCACAAGTGGTGAGTGTAGCGCATCACTTTTTTCAGTGCCGCTTAAATTGATTATCTAAATTAAAAGTTCCCGTTATGCATCACAACCCTTTTTTTAATCGCTTTTTTAATTTATTGAAAAATATAGATTAATTTAATAGCTAGAAAAAAGGGTTATTTTTGGGAAAAGTGGTTAAAATTTAGTTAAAACAAAAGGCTATGTTTGATATAATCTA # Right flank : ATAAACGATTTTAATAAAAAATTAATTGCAGATATCAAATAACACAACACAAAGGGCTTTACGCCCTTTTTAATAAAATAAATATTGATTATTTTATCCAAAAGTATACAATATTTAATAAATACAAGATTGGTGTATGTATGAATATAATTAACCAAACAGAAATTTTCGAAAACTGGTTAGAACGCTTGAAAGATTCTAAAGGAAAAACAGTAATAACAGCAAGAATTCGAAGAGCTGCTTTTGGTAATTTTGGTGATCATAAATTTTTAAGGGATGAAATTTACGAAATGCGAATTACTGTTGGTGCAGGCTATCGAGTATATTACGCAAAAGATGGAAATATTACTTATCTCTTATTATGTGGTGGTGATAAGTCAACACAAAAGAAAGATATAGACAAAGCGATAAAACTTTGGAAGGAGATTAAAAATGGTTAAAGTGACGCAATTTGATGCGGCAAAATTTCTTAATACTGATGAAGAAAGAGCAATGTATCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27764-27316 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMBA01000010.1 Gilliamella intestini strain R-53144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27763 28 100.0 32 ............................ GCTACCCCTCTGACTGTTGCGTTGAATTTACC 27703 28 100.0 32 ............................ ATTGCATTTGTAAGATGTACTCACGCTTTGGC 27643 28 100.0 32 ............................ ACACCAACCGAAACATTTGAAATATCTACTGA 27583 28 100.0 32 ............................ TGCGAGACACAGTCTTGGTTTAAAGTTATCGT 27523 28 100.0 32 ............................ AGACCGTGAGTTTTTAGGCATCAGTGATGCAG 27463 28 100.0 32 ............................ AATAATTCGCGCAGGCATGGGGATATACCCAT 27403 28 100.0 32 ............................ ATGCTCGCAATTTCATCACGAATTGTTGATAT 27343 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATTAGTGATTATGCTTTATTGATGCCTATCACAACAGTACCGGCAACGATAAAAGGCTATTTGCATTTGAGTCGTGTTAATCCTAAAGGTCAGAGTGCGTTAAGACGTGCCGAAAAAAGATTAACTGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGGTTGAAAAGTGGGGAAGCGTTCATTTGCAATATCCACATCTTCATTTGAATAGTAAAAGTACAGGTCAAAAATTTATTTTGTGGTTAAAGCAAGAAAAACGTCCAGAGCCAGTGCAAGGCACATTTAATAGCTATGGACTAAGCCAAACCGCAACAGTTCCTGATTTTTAAATTTCTAACCCTTTTTTTGAGGATGATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAAAAATTGGGAAAAGTGCAGTATGCTCTTTTACAATAAGGCACTATTGAGATAAAATTCTA # Right flank : TAAATAGGCTGCCTATCAATGCTATGGCATATCCAAGGTTCTAATGACATGTCATAGGGGCTTTATTTTGGCTAACTGCCATATTAAGAACCCCTATAAGGGCTACCCACTATAAAGGTTAAGGAGGAGTAACACATACAGCAACAGCGTCCATAGGAGATGATTCAATTTGACCAGGAGCAGGTGGATCTTCGGTGAACATCATACCCTGATTCCCCGAAATCCAGTATCTAAAATTGGTGCCTGATAATGTATCACTAGCCCATATTTTATCAAAGGAACAAGAATCTAAAAAATAAGGATAAGTTACAGGATTAAAAGCATCATTGTTGTATTCCTGCATACTACCCCACTCCGCAATAAGCCCAGCTCCTATTTGACGTTGGTAATGATTACTCGGTGATGCTGGTGTGGCACCGGGTGAGGGACCTACTTGGTCACATGAGTGAAAATAATCTTTACAAACCGCATTAGTCAAATCCTTCACTTTTACAATTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17741-17109 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMBA01000014.1 Gilliamella intestini strain R-53144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17740 28 100.0 32 ............................ CTCCTGACCTGATATACATTTTATGTATACCA 17680 28 100.0 32 ............................ AAAACGATTATTGAAAAAAACGTTGATATTCC 17620 28 100.0 32 ............................ ACATCTTTTTGGTAAATTCTGAATAACGCTAC 17560 28 100.0 32 ............................ TAGCCGTGCGTTAAACCATTCATCCGTTCGCT 17500 28 100.0 32 ............................ TGCAATGTTCTTGGATGGTGATTTAATTGCAA 17440 28 100.0 32 ............................ ATCCAAGCCAACAGTAAAGGTGATTACTTCAT 17380 28 100.0 32 ............................ AGTATACAAGCGTGTTGTTACGATGAACGTGA 17320 28 100.0 32 ............................ AATTTCACGCTCACCTAGCAAAATAGCCACAG 17260 28 100.0 32 ............................ TCGTGTCTCAAACGAAATACCTTTTATTTCCC 17200 28 100.0 32 ............................ GACTAATAATGATGATGCTACTCAAATGTTTT 17140 28 92.9 0 .................C.....T.... | T,T,TA [17111,17113,17118] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACCGCCGTGTAGGTGGTTTAGAAA # Left flank : CTTGATATTTAATTAACCAAATTGGGCGATTTTTAGGGTTATGCTGATAAAACCATTCCAATCGACTTTCAACAGAAACAGGCACTGTATCGGCAGTCACTTGGCGACCAGCAATTGTTGAATTATAGACATCGACAATAAATGATAAATCTTCTAATGTAGCATCGTGGTAAGTAATCATGTTTTTTGCTTTAAGTGGTTTAAAGTGAAATTATTGTAATTTTATTATTGTTTGTTGGCAATAAAGCATATTTTTTATAGTGAGAAAAATAATGTATAGTAATATTTTACAGTTAAAATAAAATCAATTCACTAGATGGATTTTTTAAAATACAATTTAAAAATTGCCTCAAAATATAAAATTTAGCTAACCCTTTTTTTTAACAATAAATTAAAATAAATAAAAACAAAAGGTTAAGAATGTCTTGTAAAAAAGGGTTTTTGACAGAAAAAATCCTATTTGCCTTTTGCTAAATGGAGTTATAGTATATTGGCTTCTA # Right flank : AAAATAGAAATTTCTGTATAACTGGTTGATTTTAATAAAAATAAAAAATTAAATAAAATCAATACTCTAACTGAACAATTTTATGAGCGTAATACACCCCATAACATGGTAAGGATTATATGTTCATTGGTTTTAGGTAATTCACTAAATCCTTGATTCAGAAATTATCACCAATATTCATTTTTTTCACAAAAGTTAAGATTTACAAAGCCTAGCATCATATTCTAATTAAAAAATTGTATAAAAAACTAGCCAAGTTTTTTTTAAATGGCTATACTTTAACCTACCTTAAAGAGGTAGAACATTAAATAAGCAAACAAATCAAAATAAATCATTAACTTACTTGACAGGTGAACCATAATGCATTATCATTTTAGACACCAGACACCAGACACCAGCACTGGCAAACCTATGTCTTAAATTTATCAGATAAACACACTAGTTGGATTTTTAACCCTGCCACGTTTATATCTTCAAAGTTATCTTTCAAATTATTATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGTGTAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 690-958 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMBA01000037.1 Gilliamella intestini strain R-53144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 690 28 100.0 32 ............................ AAGCGAGGATCAAAACGAAACTCTGGGCGAAT 750 28 100.0 32 ............................ GTTTCAGAAAAAGCAAGCCGTACCCGCACGCT 810 28 100.0 32 ............................ TGATGGTTTAGACGGCGGCAGAATCGAAAAAG 870 28 100.0 32 ............................ ACGTATGGCAACATTATGCACCAGTCAAAAAA 930 28 89.3 0 ....................AA..A... | C [950] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 CCTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : AAACATGGAATGATGCAAAGGGGTTGGTTAAGGAAAAGCAATTGGAGAATTTATTTTGCTCATCGGACACGCATTTTGTTAAAATGAAAGCCGATGAGTAATATGTGTCTGTCAGATTAAGTTTGAACTACTACAATTCACCAAAGCTAAAACGTCCGAAACCACCACACCCAACCCATTTTATCCACCAACAAAAAAAAACCTATTTTGACAAAAAATCGCTCTGATAGACTATTGATTTTATTGAAGTTTTTATCTTACCGTTTTCAAGCTAAATCAATCACTTACACAACCTAAACAAAGCGCCAACATAAAACAAACCAGCAAAACCACGAACAGCGCCCTAATAACAACAAATTAACCGCTCTAAACCCTTTTTTTAACGAAAATTTAAAATCAAATAAAATCAACATATTAAAAAACAGCTCAAAAAAAGGGTTTTCAAAGATGAAATTGTTGTTTATCTTTATACAGCAAGATTTATCAAATCTTGAGTTCTA # Right flank : ATAGAATTAATCATATAATTACAAAAAAAAACAATCGGCTGTACTGTCTGACTTACTCCGGCGTCAGAATGTGCCGACAACAGAGCGAGGTTAGCACGCCAAACAAGGATGTTTGGCGAAGCTATGCTTCGCCGGGAGCGAATCATAGCCGGTGCGTTAAGACCGAGCGACGGCGGAGGGGCGCCGAAGGCCACATTCTGCAGCCAAAGCGTGGGTTGTTAGGGAATTCGCTTAAATTCCCTAACTCGGACGTGTTCACAACAGCTATTTTTATCACCCAAAGCTCAAACGTCCGAAACCACCACACCCAACCCATTTTACCCACAACAAAAAAGACATTATTTTGACAAAAAATCGCTCCGGTAGGCTATTGATTTTATTGAGGTTTTTGTTGGTTTTTTTGTCAAAAATTATCCTGCATAAACAATAAGTTAACCTTGGATTCGCTCAGGCTGTTACTTACTTATTCAATTAATGCAATATTGTCAACGTGTTGTTTT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 58618-58049 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMBA01000013.1 Gilliamella intestini strain R-53144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 58617 29 96.6 31 ............................G ATCCAAACTTGGGGGGCGATAATTTCTTGCT 58557 29 100.0 31 ............................. AGATATGCTCCGCATCGGCTTTAACGGTGTC 58497 29 100.0 31 ............................. CCTACCCCGTCGTATGTTAAACGACCATAGG 58437 29 96.6 31 ............................C CAGCTTTGAGTCCATTTGTGATCAGTATTAA 58377 29 96.6 31 ............................A TTTGCTTCTAAAATTCGTCCACCAATGGTTG 58317 29 96.6 31 ............................A AATATCACGTATAGCGTCATCTTCGGGACTA 58257 29 96.6 31 ............................G CTACAACCATCTTTGTGCCGTCAGTTCTCAT 58197 29 100.0 31 ............................. GTATCCGATAAGCATTTTTTTCGGGAATAAT 58137 29 96.6 31 ............................A TGGAGCCCGAGTTTAAAGAAGGTGATTTAAT 58077 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =============================== ================== 10 29 97.6 31 GTTTACCGCCGCATAGGCGGTTTAGAAAT # Left flank : AACA # Right flank : ATTGGTTATGCTTATATTATCCAGTGATTATTTCGCCAGATAGGTTTTGTTATAGTGTTTAGTTAGCTTGTTGTCTTAATTTATCTTCAATGGAATTTTTAACTTTAACCTGATGTTTAATTCCATAACCAATGCTTTTATAACGTTTACCTTTACAGATTAGAGGCGCAAACAGGTCCAATCGGACTTTCTTTAGCACGCTATAAATGGTCGTCAAACGACTAGTCATAAAAGGTTTAGCCAATTCAGTGACAGTTATTTTTTCTTTATGATATAGGTGACATACCTCTGTCTGTGATAAGGCGTTAGTTTTGTTTTTTATGTATATTCATTACAGTAGTTTCTCAAATTACTGTAAATAACTAAGCGAATAAACTGGCTGATGAATTAGCAGATCGTCCCTACGCTGGTGGCGGTAAAAAAGAATCTAAATCTAAAGTCATGAGAAAAATTTCGTTTGAAATTGATGAAATTCAATATGAAGAATTAGAAGATATTGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9427-10235 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMBA01000035.1 Gilliamella intestini strain R-53144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9427 28 100.0 32 ............................ TGGAGTAAAACAGTTAATGCTAGAAGAAAATT 9487 28 100.0 32 ............................ ATTTGCTCAATGTATGCGGTTGATGTATCCAC 9547 28 100.0 32 ............................ ACTGGTACAATGCGAGGTGATAGATTGATTGC 9607 28 100.0 32 ............................ TTAGACTTTTTAAACGAATCTTCTTCAATATC 9667 28 100.0 32 ............................ GTTCGCATGATATTTTTTAAGATATAAATTAA 9727 28 100.0 32 ............................ TCAAGAGATAATGGATTTAAAAATGGATGAAG 9787 28 100.0 32 ............................ TAATTAATCTTTGATATTTTCTACCTCTTGTA 9847 28 100.0 32 ............................ ATTCCAAGCAAGCACGGATGCTTTAATTCTGG 9907 28 100.0 33 ............................ AGTAATTGCAAAATAATACGTTATACCCTAACC 9968 28 96.4 32 .................C.......... AGTGTTAAAATCAACGCCACCGATGCAATCAT 10028 28 96.4 32 .................C.......... CCCGCAATGCTTTGGCGAATTGTTTTAATCTG 10088 28 96.4 32 .................C.......... TGACTACGCGTTTCGAAGTATTGATCAAGTTT 10148 28 96.4 32 .................C.......... ATCAATATTTTTTACTTCTACGCCATTACTAT 10208 28 96.4 0 .................C.......... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ACAAAGAACCAAGTACATATTGTTTAAAATCCCAACCATCAACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTATTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATCGATGCAGCCTATTTAGAAAGTCACTGATTTTTACTTTTATATTAGCCATTTTATAGCTACCTGTTATAGGTGCTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGCGTTTATTAAAAACTCAGCCAATGGGTATTTTGAGTTTTAAGCTAGAGAAATCTTAGCAAATAACAAAGTAACAAAACCTAAAAATAAAAACCCTTTTTTTTACTATATTTTAAAAGTAAATAAAATCAACAAATTAAAATCATCTCTCAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : AGAAAAAAATCGTAGTACGCTCCTTATTAAAATATTAGACAGTACTTACCTATAACAGATAAGCGCCCTATCGGGCGTTAATTTTGTTTTTTATGTTTATTACTGTAATTTTTTAAATTACTGTGAAAAATACCAGGGATTTTTGCCGTAATATTAAAAATCAAATTGATAAATAATATCTAATGTTTGCGCTAAGCTTGATGTCGCATCCAAATAAAGGTTGGGCATTAGTCTATAACGCAAAGTAAACGTCGCTAGTGAATCAAAAATACCTACGCCATATTTTAGTTGTAAGTTAGGCAATATATAGCCACTAACTACTACTTTGGAGTTGTTACCTGCGCCTTGCGTATCAAGTGTTAGATTTTTGATGCCAAATACATTACCGATATCGCCAATATATTTGCCTGTTTTTGCTGTGCCAATACCAACTAGTAGTGCTGTCATCATATCACTATCACTTTGTTCAGCATTATCAATTCCTTGACCTCGAATTAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //