Array 1 287585-288771 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHCE010000003.1 Klebsiella pneumoniae strain 5012STDY7626432, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    287585	    29	 100.0	    30	.............................	CGTCCAGCAGGGCGCTTTTTATTTGTTAAT  	
    287644	    29	  93.1	    32	.C...T.......................	GTGCCGGTTAAACCTACGAGGGAGATTCTCGA	G [287648]
    287706	    29	 100.0	    32	.............................	GGCAAATCAAGTTGCACCGAGATCGCCGCGCG	
    287767	    29	 100.0	    32	.............................	TGTTGCAGGGCTGGACCCCCACCCCGGCGAAT	
    287828	    29	 100.0	    32	.............................	CGGCGCCTCAGCTTCTCGGTCGTTTGGCTAAA	
    287889	    29	 100.0	    32	.............................	GAAAATTCGAGTAATTTTCGGGGGATTTCGTG	
    287950	    29	 100.0	    32	.............................	CTGATCCCCTCCAACAACACGCCAGGCACAGC	
    288011	    29	 100.0	    32	.............................	CAGGCAACTATTGAAAGTTACGGCATCTTACA	
    288072	    29	 100.0	    32	.............................	CTATGTGCAGGACTTGTTTGGGATGGAAATGC	
    288133	    29	 100.0	    32	.............................	GTGAGAAACATCTGTGCTGACCTGACAATCGC	
    288194	    29	 100.0	    32	.............................	CTGCGCAGCGCATTAACCGTATTTTCAGTAAT	
    288255	    29	  96.6	    32	...........C.................	CCTACGATTTCGGCTTTCAAGAGTTTTTTCTG	
    288316	    29	  96.6	    32	........T....................	TCCGTAAATAACGCCAGAATCGGTATCTTTTA	
    288377	    29	 100.0	    32	.............................	ATGGTTTACGGGCTGTTCGTTTTCGAGCTTTC	
    288438	    29	 100.0	    32	.............................	CTCAAACCCGTTATCGCGGCAATGATTAAAGA	
    288499	    29	 100.0	    32	.............................	TTCATTGTTTTCTCCGTATTGAGTGCGGGTAG	
    288560	    29	 100.0	    32	.............................	CTCCTCCATGGGCGAACTAATGACGACGCTCA	
    288621	    29	 100.0	    32	.............................	CCAGGCGACCGTATCTGGGTGCGTGAAACGTG	
    288682	    29	 100.0	    32	.............................	ACTGATATCACCGAACTGGCTCGGGCCATGAA	
    288743	    29	  75.9	     0	...........ATTC...A......G..C	|                               	
==========	======	======	======	=============================	================================	==================
        20	    29	  98.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGAACCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTATTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT
# Right flank :  CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGTTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCATCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTGCCATCTCATAGCCTGTCAATT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [5-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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