Array 1 9813-10086 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOMA01000026.1 Lactobacillus crispatus strain CIP 104459 26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9813 29 96.6 32 ............................C AATCCAGAAAACTATTCCTGATAGCAATATCA 9874 29 100.0 32 ............................. ATAGATCTTTACCTGGTCTACAAAATCGGGCT 9935 29 100.0 32 ............................. TACAATATAAGAAGTTTAATTAAATTAAGATG 9996 29 96.6 32 ............C................ ATGGGTGAAATCATCAAAAAAGGAGCTTAGAA 10057 29 89.7 0 .........................AA.A | C [10079] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATCTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2477-2640 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOMA01000076.1 Lactobacillus crispatus strain CIP 104459 76, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2477 30 100.0 37 .............................. CAAGCTACAACACACCATCTGATTTAGTGGTAGTTAA 2544 30 100.0 37 .............................. AGTTAGCAAAGATCTTGCGAGGTAACGGCGTAGACAT 2611 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 38 ATTTACATTTCTCTTAAGATAAATAAATAC # Left flank : GACCACCAGTATAACCAGAAACTACTTTTTCTACCCCGTCAACTGTATCGAAAGGTTCGACCATGCACCAAAAACAACCGCCAGCGAAGATTGCTGTGTCGTAGTTGGTTTTTGCCTTGGTATCAGTGCCTTCGGCTTGTTTATTATTCTCTGTCATTCTTTGAAATACCTCCATTTTATTTGAATTTTATTGCTTTTATCATGCTTTTTATATAATTTTATTCATTTTCTAGTTATATTCAATAATTAGACCCAGGGTTAAAAAAGTATATCCTTTCTCTGGCATGAACAATTACTGAAATAATTATTTTTATTTTTATCACTATTAGTAGTTTGCTTATTTATTTTAACTGTCTACTTGATGCAGTATGAATCATCTCTGGTGCTCCCACTTTTTGTTTCTCATGGATTCGATAAATGTCAAGTTGCATCGTAACAAATGAAAGCCGTAACTTTATTTATACCCGGAGCAAGCGCAGCTTGTGAGGATAAGGAATTGA # Right flank : CAGGACCTATCTCTAACCCTTATATATCAAGCACTCAAACATCATATTCTGTCGATCAACCTTGAATTACTCAAAATCTATGTTTTTATTATAAACCTATATTTAGATTTCACAAAATATCACCAAACTTTGCATCTGTCCATCTCCAAACAAAATTCTATTATTGGGCATCGACAGATTTTATATTTTTATTCAAATTCAAACATTACGTTATTCTAAGATTATTGATGTCTTTATAAAAATTCAACTTAAAGTAATACCAGCAAGACTTATACTAATCAATGAATGCTGTCATACCAATCTATCTCTTAATTCTTAGGAAGAAAACATATCAAAAAAAGAGCTAACTTAGACTTAACTCCGATTGAATATCAAAATCAAGTCTTAGTTAGCTAGAATAAATATTCGTCTACTTTTATCTCTCATTACAAAATAAATGTGCTAATAATTGAATTTAAGCTTTTAGATTATTTTTTAGGTATAAAAATAGATTCTTGCAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCTCTTAAGATAAATAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //