Array 1 7543-8889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR214010.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 7543 36 100.0 39 .................................... GGAATAATAGGTAAGTGAGCGTAAGCAACAGACTCCATT 7618 36 100.0 36 .................................... TTTACATATGCTTTTCTCCTAGCCTCTAAACTGTTT 7690 36 100.0 37 .................................... TTAGCTTTAAGTAAGGCTCATAAGGTAGCTGAAAAAC 7763 36 100.0 35 .................................... GTACTTGGGACTTAGGGTACTTTTCAATTACTCTC 7834 36 100.0 37 .................................... GTACAGTTGTTCCCAAGTTTCCGAGCTTAAAGGGTCG 7907 36 100.0 37 .................................... TAATTTGTTAAGTAGTGTAAATCGGGCATGCGCGTGA 7980 36 100.0 35 .................................... TAACCTGCGATCGCTCCGTCCATACCATTCCCCCT 8051 36 100.0 34 .................................... AAGCTACTGGAGTTGCAGACTCGGACAACAATAA 8121 36 100.0 34 .................................... ATAGTTTGCACGTAGCTATAACGAAAATTTTCGT 8191 36 100.0 36 .................................... TTTACAAACAAAACATGGAAACAGCTAAACAAAATG 8263 36 100.0 39 .................................... TCAATAATTAAAGAGTTACCAATATCGCGACCCCTAACT 8338 36 100.0 40 .................................... GTACTCTTGCCGCTACCAGATACGCCCCATAAGAATAAAT 8414 36 100.0 40 .................................... GTACTCTTGCCGCTACCAGATACGCCCCATAAGAATAAAT 8490 36 100.0 34 .................................... TACCACTAAAGGGTGGGATGTCACCGATGCAATT 8560 36 100.0 36 .................................... GTGCTTATTGCATCGGTTATAACGGGGAATCTTATA 8632 36 100.0 39 .................................... GTAAAAAACTAGAATTACGCCGTTCGGGGGAACGCAAAA 8707 36 100.0 34 .................................... CAAATTCGCCAAACCGCCTTAAAACCAACTATTT 8777 36 100.0 41 .................................... ATTGATTATGACGGAGTTGTGGCGCAAATCAAAGAAGCAAA 8854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 19 36 100.0 37 GTGTCCTAACCTTAGATGCCATAAGGCGTTGATCAC # Left flank : CCAAACGCTGGCGCAAAGCTTATAAACTGATTGAAGGATATGGCGATCGCTTGCAATATTCGATTTTCCGTTGTTGGTTATCTCAAAGAACTAGAGAAAAAATGCGCTGGCAGTTAGAAAAAATCTTAACCCAAGAGGACGATCTAATTCTAATTCGTTTATCCCATCAGTGTGTCAAAGGTTTACCCGCTTACAATCGTCCCAATACTTGGATGATGGATAGTGGTGGTTTTCGAGTATTGTAATTTTTACAAGCACCTCTGAATGTTTGGGTTTTTTAGGTTCTAAAATAGTGTCAAATCATTACTGGGCAAGGGATGGAATGAGTTTTTGACTATCTGTAGATGCTTGAATTTTGTTGTATCCTTTATCTAGCAAGGGTTTCAGCAATTGGTTATTAAGCTGATTTATGACTTTTCAGCGAAATAATTGGCATTTTAAAAGAGATGCTTGTAAAATTGCTACTGGATACTCATATAGAAAGGGTTTCGGCGACTGCC # Right flank : CCTATTGCAATCTCTATACCCACCGACGACGGATAGCCATTCTCCTATTATCCTTTGACAATTTTTGACTACGTTCTGGTCTTTGTGAATTATTACGAAATCATCTGCGTATCGGATTAAGGAGAGAGACATTTTATTGTCTCTCTTACATCCTTTCCATGTTGCAGCATATTCTTTAATTCTTGATTCCATTCCGTGTAGAGCAATATTGGCTAGTAGAGGGCTGATGATTCCCCCTTGTGGTGTACCTTCGTTGGGGAATATTGTTTCTCCATTGTCCAGTACTACTAAATCCGATTGACAGAAGTAGCTTAAAATAATAGGTAAAATACTTAAATTTACTAATGCCGAAAAAAGCCTATTTAGCTTCGCACCTAAATACTCTTGAACTAAAAAAGCGATATCAACAAAGCAAAAATCCAATTGAGTCAAGAAGATGGCATTTGCTGTGGAAAATAGCACAAGGTTGGACTATTAAAAATAGTGCGATAGCAGTAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCTAACCTTAGATGCCATAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3694-3435 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR214037.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3693 36 100.0 39 .................................... CTGAGTAAAAAAGAGGATAAGTATTCTTGGCTAGGATTA 3618 36 100.0 36 .................................... CTGATTAGGATGAAGTTATTGATATCTATAAAAATA 3546 36 97.2 40 A................................... ACAAAACACCCAAATCAGCCAAAATACTGAAGGTGTACTG 3470 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 99.3 39 GGTTTCAACTCAATATTTTCTAACAAGAATCAAAAG # Left flank : CAATCTCACTTAATAGTATTGATTATGAAGTTTTCAAAAGGCTAGAACATAGAAAAAATGACTTGGGAAATTGGCAGGGTAAAGCTAGCGAAATTTCTGATTATGTCGCAACTTGGGGAATTTTAAGATTTTGGGCTTTATCTTTTAAAAAAGATGAGGAGAATTCAAGTAAAGTTAGTTATTTTGCTTGGCAAGTTGCTAGAGAAGTCTTGTGTCAAATAATAGATGATAGTTGGGGGATTGATAAAGATACTCTAATTAATGAGTTCAATGAAAAACTCTATAATGATGATCCTAATTTATTAAATGTTCAAACTCAAAGGCAAATGGTTATTGCTGAATTGTTGATTGAAATTGGAGATACAGTTCAGTTTTGGACAAATAGATTTAAAGATAGTCAGAAAAAAAATACTTAGTTTTATTTGACAATAAATTAGTTACAAGACTAGCGATCGCTAGTCTTTTTTTATGGAATATCCATTATTTTTAGATGGATGTTA # Right flank : ACTGGGCTTCAAAAGCCCTAATATGACTGAACTTCAGGACGCTTTTTCGTGGGATAGTTGAAAAACTGAATTTTATTCATAATTAATGGCAATAAACCACCTTTAAAATCGCTGTAACTTATACAGTACAAGCCATCGACGGAGCTATACCAAATAATGGGTGTTTCAGCCATTGACGCTATCCCTCGAATACTATTAGCAACAAGACCAAACATTATTCCATAAATTAAAATCAAGAGCAGCTATTTCTTCATTGATTAGTAATTTGTGCATTTCAGAGTCAAAAACAGAAACTAAATTATAATGACCGCGATCGCTAATAGCATAACCAGATGGTCTACTCTCATTATCACCACACCAATCAGGTCTTTCTTGATTATTCCTCCGTCTTTTATTAGTTGAACAAATACAGTGAATTAACTCATTACGATAATGTTGTTTAATATTTTGCTTTGATTTCCAGAGGCTGATAATAGCACCGTTGAGATTGTCATCAAGGG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCAACTCAATATTTTCTAACAAGAATCAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 6056-6316 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR214038.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 6056 38 100.0 37 ...................................... CTGAGTAAAAAAGAGGATAAGTATTCTTGGCTAGGAT 6131 38 100.0 34 ...................................... CTGATTAGGATGAAGTTATTGATATCTATAAAAA 6203 38 97.4 38 ..A................................... ACAAAACACCCAAATCAGCCAAAATACTGAAGGTGTAC 6279 38 97.4 0 .G.................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 98.7 37 TAGGTTTCAACTCAATATTTTCTAACAAGAATCAAAAG # Left flank : GGCAATCTCACTTAATAGTATTGATTATGAAGTTTTCAAAAGGCTAGAACATAGAAAAAATGACTTGGGAAATTGGCAGGGTAAAGCTAGCGAAATTTCTGATTATGTCGCAACTTGGGGAATTTTAAGATTTTGGGCTTTATCTTTTAAAAAAGATGAGGAGAATTCAAGTAAAGTTAGTTATTTTGCTTGGCAAGTTGCTAGAGAAGTCTTGTGTCAAATAATAGATGATAGTTGGGGGATTGATAAAGATACTCTAATTAATGAGTTCAATGAAAAACTCTATAATGATGATCCTAATTTATTAAATGTTCAAACTCAAAGGCAAATGGTTATTGCTGAATTGTTGATTGAAATTGGAGATACAGTTCAGTTTTGGACAAATAGATTTAAAGATAGTCAGAAAAAAAATACTTAGTTTTATTTGACAATAAATTAGTTACAAGACTAGCGATCGCTAGTCTTTTTTTATGGAATATCCATTATTTTTAGATGGATGT # Right flank : GACTGGGCTTCAAAAGCCCTAATATGACTGAACTTCAGGACGCTTTTTCGTGGGATAGTTGAAAAACTGAATTTTATTCATAATTAATGGCAATAAACCACCTTTAAAATCGCTGTAACTTATACAGTACAAGCCATCGACGGAGCTATACCAAATAATGGGTGTTTCAGCCATTGACGCTATCCCTCGAATACTATTAGCAACAAGACCAAACATTATTCCATAAATTAAAATCAAGAGCAGCTATTTCTTCATTGATTAGTAATTTGTGCATTTCAGAGTCAAAAACAGAAACTAAATTATAATGACCGCGATCGCTAATAGCATAACCAGATGGTCTACTCTCATTATCACCACACCAATCAGGTCTTTCTTGATTATTCCTCCGTCTTTTATTAGTTGAACAAATACAGTGAATTAACTCATTACGATAATGTTGTTTAATATTTTGCTTTGATTTCCAGAGGCTGATAATAGCACCGTTGAGATTGTCATCAAGG # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGGTTTCAACTCAATATTTTCTAACAAGAATCAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 5327-2100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR214079.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5326 37 100.0 36 ..................................... TAACCATGGGTGTAATTAAAGCTTATTGCCCCGAAC 5253 37 100.0 36 ..................................... AGATAACCTTCGGAGATTAATCGAGTGAGTATCTCA 5180 37 100.0 34 ..................................... TAATCTTGCGCTCAAGTTTACTATAATCAGGAGC 5109 37 100.0 37 ..................................... AGGATTGGCTTGCTAAATATCAAGCTGCGACAACATT 5035 37 100.0 33 ..................................... TCTGACTCTTCTTCGCCCCTAGTTGCTTCAACC 4965 37 100.0 41 ..................................... ATTAAGAAATTTCGGGAGTCTTAAAGCGAAAGCAAAGACTC 4887 37 100.0 35 ..................................... TATCAACTTGCTCCTCAAATTGAGCGCACCATATT 4815 37 100.0 37 ..................................... ATAACCTTGCTGAAAGATGTTGTAGTCTGCTCCTTGG 4741 37 100.0 35 ..................................... CCATTTTTAATAGATTCGCAAATAGAGGTAAAAGC 4669 37 100.0 35 ..................................... TGCAAACTCTCCTTTTAATCCCACAGAAATTTCAC 4597 37 100.0 35 ..................................... AAGCACGATTTATTAATCAAAGGAATTAGCGCAGA 4525 37 100.0 35 ..................................... CATCAAAATATTCTGGTGGTAGTTCAATCAGAATT 4453 37 100.0 35 ..................................... TCAATAAAGATGCTACTTGGATCGAGAAATATCTT 4381 37 100.0 35 ..................................... TTCTAGTTGAGAGCGTACTTGCTCTAAGGATTGTT 4309 37 100.0 34 ..................................... TTTGAACTTAGGATAACCGCCAGCACCATCAAAG 4238 37 100.0 35 ..................................... ACAAAGGGATATTTCTTCTGAGGAGCATCTCGATT 4166 37 100.0 37 ..................................... GCAACGGGAGCATCTAAATCTTTGACAAACCCTAATT 4092 37 100.0 36 ..................................... CGTGTAAGTTTCTTTGGTTAACTCCCTAATTGAAGG 4019 37 100.0 34 ..................................... AAGAATACTGGTAACAGAAGCTTGTATGACAAAT 3948 37 100.0 34 ..................................... CTCTAATGAACCAAACAAATACACTAAAAAAAGG 3877 37 100.0 33 ..................................... GGTTATCGGTTAATTCTTTGATTTCTATCTCAG 3807 37 100.0 36 ..................................... GACTAATGTGGGGATTATTAGCTCTTCTTCTTTCAG 3734 37 100.0 35 ..................................... AAAACTAGAACTAGAAGTAGCAAAAGCCCAACAAA 3662 37 100.0 38 ..................................... TCAATATTTTGTCTCCGTGAATATACTGTAGAATCATT 3587 37 100.0 33 ..................................... CATAGACGACCCCATCCTCATCAACAATAGAAT 3517 37 100.0 34 ..................................... AAACATCGGGACTGACCCGCACGGGAGTCTCTTA 3446 37 100.0 34 ..................................... GGTTACAGATTAGCGGTAGAGAACGGACGTACTG 3375 37 100.0 36 ..................................... TGAACCCTGGCGTGTCGCCCAATCTTTGAATTTATC 3302 37 100.0 33 ..................................... GACATAGCCTTAAGACTATGTGAATGAGGAAAA 3232 37 100.0 41 ..................................... TTTTGTCACTTATGTCGATATAAACGGGAATCCTGTAGTGG 3154 37 100.0 35 ..................................... TGAGTAGATTGATTGAAACCAGGAGTACTAATAAT 3082 37 100.0 34 ..................................... AAAACACTACGAATTAAAAAACCAATAATTACTG 3011 37 100.0 35 ..................................... TTATACCTAAAATCTAATGATTAAAAACTTTGCTG 2939 37 100.0 35 ..................................... AGGAAAAAGACAACAACAGAGATTTAGATTCTCGA 2867 37 100.0 35 ..................................... TGCCTCCTGGAGGGGATAGAAATAGACAGTATCGA 2795 37 100.0 39 ..................................... TTTGTAGATCAAACTACCGATAATGACAGCGTTTTCTGG 2719 37 100.0 36 ..................................... TGTGAACTCAAACTAAAACCAATTATCGAATAAAAT 2646 37 100.0 35 ..................................... TAATAGCAATACGGACTCCCATTGCAACAACAACA 2574 37 100.0 35 ..................................... AGAGATTGCCTATCGAGATGAAGATAATTACTTGT 2502 37 100.0 36 ..................................... CACTAGATAGCCCTTGCCCCGATACTACTTATAAAA 2429 37 100.0 35 ..................................... ACTTAAATGGTAAGTGGTCAGCCATGATTGGTAGT 2357 37 91.9 40 ......................CTT............ AGAACCTTGGCGTGTCGCCCAATCTTTGAATTTATCCCAG 2280 37 91.9 35 ......................CTT............ TTGTTTTCGTTTAATCGGATTAGCACGATACAAAA 2208 37 100.0 35 ..................................... GCTTTATTGCTCCCCGTAACAGTGGGATTGGTATT 2136 37 91.9 0 ......................CTT............ | ========== ====== ====== ====== ===================================== ========================================= ================== 45 37 99.5 36 GTTTAAACGAAAATTAATTCCTAAGAGGAATTGAAAC # Left flank : ATAGTTAGCTACGATATATCTGAAGATAAACGCCGAACTAAAATTCATGACATTCTTAAGTCTTTTGGTCAGTGGATGCAGTATAGTTTGTTTGAATGCGATTTAACCAAGACTGAATATGCTAAATTGCGATCGCGTCTCAATAAAATAATTAATCCTGAAACAGATAGTATTCGCTTTTATTTTCTCTGTGGTTGTTGTCAGAATAAAGTAGAACGTATTGGTGGTGAAGCTGTTCGAGATGATACTGTTTTCTTTGCCGAGTAGAATATTGGCGCGGAAGGATAGATGTAGAAAATGCTTAAGTTCCCAAAATCTCTGAAGTTATTGCAGCATCTTGCTTTGAGTGTAATCAAGCTGATTTCGGTGCCGCGCACTATACGGAGTAAAGCTTTCAGCGATTTCGACTCTATTTTTCTATTTCTTTGTGCTATTATCAACCCAGTACCGCGCCAATGCACCTTGAAAATCAAATATATCAGGGGTTTTGTCATACCGTT # Right flank : AAATTAGCAACCGAGCGTACCAGCACCTTTTGGAATGTTTAAACTTTAGTAGGAAAAAATTAATGGTAATTATTGCATTTCATCGATGATGGTAGCTAGATTAAAGTAAAGGTTGAATTAAAAAGAATGAAAAATACATTAATACAACATACATTCATTTTTGGAGATACATCCAAAATAAAATAATTTGATGTTATTAACTACCTAGCTTAATAATTAAAAAACTAAAATTAATTATTTTCCAAAACCACCACCACCAGGAGTTTCAAGTACAAAAATATCTCCTGATAACATTGTTTCCGTAGCAGTGCTATCTAATTGTTTAACCGCACCATCTTCTTTCATAACATAATTTTTACCTGCTTTTCCTGGTGTTCCTCCTTGTAAACCAAAAGGAGAGTTAACACGATTACCAGATAAAATTCCTGCGGTCATTTCTTCAAGGAAACGCACCTTTCTAATTACACCATTTCCGCCATTATATAGACCTTTACCACCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACGAAAATTAATTCCTAAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 28986-29694 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR213771.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 28986 37 91.9 36 ..........C.G.......T................ TATTACGCAAAACTCCATCATGGACAAAAATTATAG 29059 37 100.0 37 ..................................... TGACCGTTATTGACCTCAATCCCTGTAGGTCTGTTAT 29133 37 100.0 43 ..................................... CTCTAGTATTGCGATCGCGCCAACTTAACAGCTTCGACTATTT 29213 37 100.0 36 ..................................... TTCGATTTAACAAGGGCAAAAGCAATTCATATTCTT 29286 37 89.2 39 .......CA.C.G........................ TTGTAATCGATATTTTTTCTAGCTTCGCGAATCGCTGTT 29362 37 97.3 41 .......................T............. CCTAGCATATTTTGTTTTCCTGGGATCATAGAAAAAGCTAT 29440 37 100.0 36 ..................................... AAGTAACCTCCCGTTAGAAAGCGCAGACACTGTATC 29513 37 91.9 35 ..........C.G.......................A ACTAAATCTTTTGCCAATTCATATTGCAATTTATT 29585 37 89.2 36 T......................T....T...C.... AAATAATGAGATGTTCCACCACCAATAATAATTTCT 29658 36 73.0 0 G..TC...-.A..C.T.A....G.A............ | G [29681] ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 93.2 38 CTTGAAATGAGCTAAAATCCCCTCTGGGGATGGAAAC # Left flank : ACGCGATCGCTTATTTTGGCTCGTCGTGAGTTTGGGGAATCTTTGGTTTCTATTGCGGAAGATTTAAAAATGCCCTATGACACGGTTAAGACTTATGCTAAGTTAGCCCGTCGTGCTTTGAGGGGTTGATTTCCATAGTTGCAAGAGCTTTCTTTGGGATCTGTTTCTGTCGAACCCAAGTGTGGAAATTACCATCAGCAAAAAAAATGGCTGAAACCAAGATAATATATTGATTTGATTGAAGGTTTGTCGATTAAAAACACCTTGACGATCTATATCTAGTAAGGATTTAATATCAAATACTTAAATGTTTGCTACAAATAATTTTACCTTGTAGTGATAATTCATGAATTATCACTACAGATTATATGTTGCATTCTTTTTTGTATTTCATATAAGCTTTTTTTCTCTTTGTTTGCAGATTGCTTGTGCTAGCATTTATAGGACTTCGATAAAATGCACCTGGAAAACTAAATACTGTCTGGTTTCTAAGGTACAGA # Right flank : CAATTGCTTAATGCATTGTATAGACGATCGCATTTTTCAAACCAAGCATCCCAGTGTTCAAACATTCACTGTTATATAGCGCGATCGCATAATAGAAAATCTTAGGAGAATGGCGATCGCAATAAAGCCTGAAATATAGTATAATACTCTCAAACAAAATCCCAGTCGCGAGCATGGTGCGACAACACCAATAAACTCCACTGGGAGTAACCTACAGGAGAGGTCACAATGAGTATTTTACGTTGCGAAACAAACGGTATTGAATTTTTCACAGTCCAAGCTACAGGCGAATCAGGGATTAGTCATCGCGGATTAGCAATTTTATGTGGTGTAACTCACTGGACTATAAATGAATTAGTAAAAAACCTGGAAGCCAAACAAGCAGCAAAACGCCTAAAAGCTTTTATTGGTAAGGATTTGCACCTGGAAGGGGTTTATAAGAAAAAAGGTGGTGTGGTCAAAATTTTAAGGGCTGACTTTTGTGCTGCAACTGTCAAACA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATGAGCTAAAATCCCCTCTGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 31875-31475 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR213771.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 31874 37 100.0 35 ..................................... TTTAGTGATTCCGAACTCCAAAAAATTCTCAATAT 31802 37 91.9 35 ....T.................A..G........... TACGTTATTGGTTTCACCATGGGGAGCGATCGCAA 31730 37 97.3 34 A.................................... AGAAGCGATATCTTGGATGTAGTATCGAATCTAG 31659 37 100.0 37 ..................................... GGTAAAATCTTCAGACAAACTAGCGAATCTGTTTCTT 31585 37 97.3 38 ......................A.............. TGCGATCTCTTTTTTGAGGGGTTCTGGGGAAATCACCT 31510 35 81.1 0 ..............A.......AA...--..C....G | T [31486] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 94.6 36 GTTTCCATCCCCTTGCGGGGTTCTGAGTTATTGAAAC # Left flank : GCATACCATTCCAAAATGACCGCGCAAACTGAGTCTTTGATAATAGTGATATTTTTAAACTCATGATAACTCGTACCAAGTGTCAATTCTTTATTCTGCAAAGGTTTCAGAAAATCTGGGCAAGAACTCGTGATAACTGATTTTAATAGTTGATTGACTGCATGAGGTTTAACTCCACACATCCGAGCCAAACCAGATTGACTCATCCCAGATTTGCCTGTTGCTCGAACAGTGAAAAACTCAATACCTTCTGATTCGCGACGTAAAATACTCATTGTGACCTCTATATTAGGTTACTCTCAGTGGAGTTATTGGTGTGTCAGCACCATGCTCGCGACTGAGTTTTGTCTTAGAGGTATTATACTACATTTTGGTTACTTTGGCGATCGTCATTTTCCTAAGATTTCTAATTATGCGATCGCGCTATATAACAGCGGATGTTTGGACATTTGGATGCTTGGTTTTAAAAATGCGATCGTCTGTTAGTGCATCAAGCAATT # Right flank : ACTTCGCTGTAGAGAGCTTATAGAGCAAGGGTTTCAGAGGACAAATCGACACAATAACTATGTACTGGTCAATATTTGACTCCTATTGAGAAAACATGGAACGATCTATCTTCTCAAAGCCTGGATCAGACTGGCATCGACGCAATACCGTTCGGTTAAGCCCCCCAGCCCCCAACTTTGGGGGAGCCAGATTTGTAAGCAGCTAAGGAATGCGCGAGTGGGGAGCCAGATTTGTAAAAGTTCCCCAGGATTGGGGGATTTAGGGGGCGGACAAAATAACTTGAGCGACTAACCGAACAGTATTGGGCATCGACGCATCTCAATGAAAAAAGTACATTTCAGCGTTTGAAGTTATTGTGTCGATCGCGATTGTAAAAAAAGCGGTGTGACCCTAAGAAATATTTAGTTTTCAAAGTACTTGGTTACTATTATCCATCGCCTTAAGCAATTATTGATTGTTCCCAAGGATATCTTTAGTTTTGAGCCGAATAGTAGTTTCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCTTGCGGGGTTCTGAGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 33607-33867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR213771.1 Hyella patelloides LEGE 07179 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 33607 35 100.0 36 ................................... CTTATATGAACATTAAAGCATTAGTCTAATGCTAAC 33678 35 100.0 41 ................................... GATATTATTAAGCATAATATCTTTAACAACACTATCAAAAA 33754 35 100.0 44 ................................... CATATGACAACCTTGTCCTGAGATGGAATTTTACTTACAACCAC 33833 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 4 35 100.0 41 CTTTGAAAACACGTACCCCGTCAGGGGATGGAAAC # Left flank : AATTGCCAAATCTCTGCAAATACCTTACGAAACGGTGAAAACCTACGTTAAGTTAACTAGGGCAGATATGAGAGACTATTATTCTGAGCAAAACTAATTGGTTTTTTTCTTAATAACGGCGATCGCGCCATAAAACCAATTCATTGCCAGTTCTGAACTATTGTTTTGATATAACCAAAAATATCCAAAATCTTAGGAAATAATAAATAGTTTCAGGATTACTTATAAATATTGATATAGTTTTGATACTAAAGAACCTTGACAATTTAATAAATTTCTCTAGTAAGTTTCCCAATATTTTCTATCAGTATTCGGGGGGTAAGCCCAACCTCTGAATACCCTATAATTTGGTTGACCTCCGTCGATGCCTCTCACTGTATGGATTCTAAGCCGATAGCACTTGGGCTTATTGCAACTAATTTCTATTAATTTGCTGTTTTAAATTAGCCCGCGAAAAACTGCATTTGAGGCATTGCCCCATAAGGGTTCTAAAGGCTAGT # Right flank : CACAAAAAAATACGATCGCCAGTCTTAAATACAACCTGCGATCGCCAAATCTCAAACTCAATTAGCCTCAAGCACCTAAATATTATATTTCTCCCACAAAATACTAGCGATCGCTTTGAAATGACTATAATTTAGCTATATATTGAATTTATTCATAGCTATCTCATGTCAAATTTAATTAATGCGATCGCCCATAGCAACTTCCTTGCATCAATAACTTCTGAGTTAGTCAAAGATGAATTTGATTTGCTTAAATCAAACATTTCCTATTCATATAGGATTATTAATTTTGCCTTTATTTCGGTTACTGCGATCGCGGGATTTGTTGGTTTAACTAAAATTCTCAGTTTCAAAGAATTAAAAAGAGATGTAAACGATCTAATTGAAAGAACTGTTACTAAAGAAATTGCAGAAAAAGTTAATCAAAGAATTGAAGATGTAGAAAGAATAGTCAAACAAGAGGCGATAGTGAGTAGCACTAACGTTAAATATTGCTTGCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAAACACGTACCCCGTCAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //