Array 1 61106-60335 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVX01000004.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold2.6_C1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 61105 37 100.0 36 ..................................... CTTTTCTAAAGTGCTTTAAAGCAAACCTGATTTTTC 61032 37 100.0 36 ..................................... AAAAGATAATCGAAACTATAGATTCAGCACCACAAG 60959 37 100.0 38 ..................................... TTTGCAATAATTCCAAAGAAGTTCCACCCTGTTCTTAA 60884 37 100.0 38 ..................................... TTTAAATTAAGAGTTATACAGCAATCGACAACACTCAA 60809 37 100.0 36 ..................................... AGTACCAGTAATCATTGAAAATATGATTCCGTTGGC 60736 37 100.0 36 ..................................... ATCCAGATGCCTACTTGGGACAGGGTGAGTTAGTAC 60663 37 100.0 37 ..................................... AAGCTGATGCCACAAGAGTGGGTAACAATCCGAGATG 60589 37 100.0 37 ..................................... ATTTGATATCTGATATCAGAGCAGAGCTAAGATTGAG 60515 37 100.0 36 ..................................... TCCAACAAAATCCCATTTACCTAAATCAAAGGTTTC 60442 37 100.0 34 ..................................... TTTCATGTTCGGTTTGATAATGTGAATCAACACA 60371 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 100.0 36 CTCGCACCGATTGCGTTAATTCGGATTAGTTGGAAAC # Left flank : TTCTTTGTCTGTACAAAGTCCGTTACAATATACACCAGCCCAGTCACAAGATGGAAAGCCTACAGGACGTTCTCTCAACCCGATTGAAATTACTCTTAAAGAACAGTTTCGCAGAGGGACAAATTGAAGCAATTATTCAGAGGGAACTCTTAACAGTGACCTACAAGTGACCTACATAGTATATTGTGGGATTAGGGTGAGCAAATTCGTCTCGCTTTACGCGATTTAAAGATTTGATTTTTGGTTGATAAAATCTCGACAAAAGCAGGTAATCGATCTATAGTTTGGTTATCAGCTTGATGTTTGGCAGAACGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAAACGCCAGAACCTAGACAAGTAAATACTTTGAAGGTTTGAAGTGTTGAGATAAATGAAAATATCTCTCAACAAGCGTGGCTGAAATTAACCTCTTTTTGAGGTCTGCCAAAACTCGTTCTGGAATGCTTACTATGTAACGTTTTCAGGGCGC # Right flank : CGATTTCACCGTGATTACAAACATCTTCCTCAAGGATGGACACCAGAGGATGCGATCGCGCAGAACATCCGCTTCGCGATCGCAGATTTTACAGGAATGACTGCCCAAGCTAGTGTGAGAATGATACTCACTTCTTTATTTGTACAAAGTCTATTACAATACATACCAGCCTAGTCACAAGATGGAAAGCCTACTGGACGTTCTTTCAATCCGATTGAAATTAATCTCAAACAACAGTTTCGCAGAGGAACAAGTGAAGCAATTAGTAGCTATTTGTAACCTGATATTTTGATATGGTATTTAGCTCTTGTTCTTCTTCCTTGAGTACATGATATAAATCCCAATTTTGTTGGAGATTAAGCCAAAATTCCGAACTATTTCCCAAAAATTTAGACAGACGCAAGGCTGTACTTGGCGTCACACCACGCTTCCCATTTACTAGCTCATTAATTCGCTGAAAGGAAACGTGAATTCCTTCAGCAAGTTCAGTTTGCGATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCACCGATTGCGTTAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 77881-75284 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVX01000004.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold2.6_C1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 77880 36 100.0 39 .................................... CCTAACTTCCAGTGGCTCTGTTCTGTCCACTGGATGAAG 77805 36 100.0 39 .................................... GTTTGCCTTTTCATCAGAAACTTCCAGAAGGCGTTGCCA 77730 36 100.0 37 .................................... CTGATAAAATCAAACTTTATCATTCGGTTAGTCGCAA 77657 36 100.0 38 .................................... TATCCAGTCGCTCTCTGATGAAAACTCAGAAATGCATA 77583 36 100.0 34 .................................... CATCCTACCAGCCGGAGCTGGTAAAGAGGAAGCA 77513 36 100.0 40 .................................... ATTCGGTTAGTCGCAAGCTGCAGAGCCAGTTCGTCCGTCA 77437 36 100.0 34 .................................... GTAACACTGTTTCCGGCATCAATATCGGCATTGG 77367 36 100.0 34 .................................... AGGCGGGGACGCCATCCCCTAACGGGTAAATTAA 77297 36 100.0 41 .................................... TTCTCCTAATTCCAGCCAGTGCATCGGGTCTGGATTATATT 77220 36 100.0 36 .................................... ATCGCAGAGCATCCGAACGCAGAAAGCGTCAGAAGT 77148 36 100.0 35 .................................... GATTCTGATTGCATACGCTGTCAGCAAAATTCAAG 77077 36 100.0 38 .................................... CATTAAGAATTTTATCTGACTCACAAAAGTGAGTTTTT 77003 36 100.0 37 .................................... GTCTGTTTCATCGTCATTGTCATCGTCAAAATCAAAA 76930 36 100.0 38 .................................... CAGATAAAGTCATTCCTCCAACTCTGGTATTCACTCTT 76856 36 100.0 36 .................................... CGTAACTCTGTGTCTTCTATCAATAGAACATCCCCA 76784 36 100.0 41 .................................... ATTTTTCCAAATAGCCTGAACACACGCAAAAGTGTCGCCAA 76707 36 100.0 36 .................................... TCAAAAAGAATAGAAAAGCTCACAAAAAGTTTAAAG 76635 36 100.0 34 .................................... AAGCAGCTGCTTGTTGGTAATCTGGGAAAACAGG 76565 36 100.0 33 .................................... GTTATTGTTCCGCCGACAGGCACTTGCGCCTTA 76496 36 100.0 37 .................................... TTGTGGGCTATAAAGGGAGAGGTACGGCTGGCGCGCA 76423 36 100.0 40 .................................... TTGCGCCCATTGGGAGGGCTGAGCAGCAGGAGCAGCGCGG 76347 36 100.0 40 .................................... GCCGGGAAGGACGTGCGGAAAGACGGCACACGCGGCAAGG 76271 36 100.0 35 .................................... CATTTACAGCTCCGGACTCCACGTCAAAGTGGAGG 76200 36 100.0 41 .................................... TTGCATCATCTGGCTGTTTATTTCGACAAGCTTGCGCTTGC 76123 36 100.0 40 .................................... TTGGGGAACGAGTTCCAGTTTCCCGCGGATTCCGAGGGCT 76047 36 100.0 34 .................................... AGCGGTTACGCTTCGGCTTCAGGGGTAAGGTTGT 75977 36 100.0 40 .................................... TTCTTTCAGCATTCCTGCTTGGAGCAGATCTTGAGCATCC 75901 36 100.0 36 .................................... CCTATTTTGGTATAGGGGTCTTTACTGGCTGACTGT 75829 36 100.0 37 .................................... ACGTTATGCCTTCCTCAGCGGCAATTTTTTTTGCCAG 75756 36 100.0 42 .................................... CAATTTTTTCGTCCAACTCTTCTTCTTCTATTTCGCGAACCC 75678 36 100.0 35 .................................... CATAGACTGCCACAGGGTAGCAGTTTGTGCTTTTG 75607 36 100.0 41 .................................... TTTATACCTAAACGAATCATTGCTGCAATCGCGCGCTGATC 75530 36 100.0 41 .................................... GTGTTAACAATGGTCGCACCATCGCCAACGTTTCCGCTGAT 75453 36 100.0 28 .................................... GACAGATCACTTTTTTTTCCGGGTTCCA Deletion [75390] 75389 36 100.0 34 .................................... TCTGGAAAAAAAAGACCGCCCTTGGGGTCCTGCT 75319 36 77.8 0 ...........................TAAAA.GGG | ========== ====== ====== ====== ==================================== ========================================== ================== 36 36 99.4 37 CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Left flank : TTTCATATGTTAGTGCTTGTTGTGTATGATATTCCTGATGATAAAAGGCGTACTAAGTTATCTAATTTTCTAGAGGGTTATGGGCGAAGAGTACAGTTTTCTGTGTTTGAATGTTTTTTAAGTTTGGAGGAAATGCGGCAACTTTTTGAGAAATCAAAAAAACTTGTCATACCATCCCAAGACAATGTGCGATTTTATTGGATTTCGGAAGAATCTGTTTCCAGAGTGTTAACTATTGGTGGTCAAGAACCAGCAGCACCACCAAAGTATTATGTTATCTAGGTTTGAGCAATTAAAGAGGTAATTTTTCAGATGCTTGTCTACACACTCCACCGAATCGCTGAAATGCCTATTTTTTCGTTGCAGTGTGTCGATTGCTTGCAGGGCAAGGATTTGAGGCATGTGTTTTACTCAATTTTGGGCAACATATATAATGTTTTCCAGGAGTGTGTCGATTTGGCAGCTGAAACCCTTACTGGGTAAGGTCTCCTAGACGAACT # Right flank : AGAGAATTATTTCTCCCTTTTGAAAATTTATTTGCTAAAACTTTCAAATAGATTTACAGTAATTCAAACCCAAGATTCAAGAGCAAATTTTCTCACTTGTTGAATTCGTAAAAAGTCACTATCACTTGAAACAACAGTCAAATTATTTTGTAGCGCAATAGCGGCTATCCAAAGGTCATTTTCTCTGCCCTGGGATTTTTCCATCATGAATGTCAGTTCACCCTGCACAATTACACAAGTTGCAATATTATTTTCTCCAACTTCACTAACACGATGAATAACATTTACATTGCCTAAGATAATGGCACTACAATGATTTGTATCCAATAAATACATTATTCAAATGGGTTTTCGTCATCAAATTTAGCTTGACCACGGGTAGCATATACTAATTGAAGACATTCCTCAAAATCATCACCTTCCCAAGTTCCTGCGTGTCGGAGGATAGAACGTCCGGAACCCGGACGGTATGTAAGTTGCTCTTGCTCGCTGTTCGATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 164237-165149 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVX01000004.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold2.6_C1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 164237 36 100.0 36 .................................... ATTGTTTGTTCTTCCTTCATTCGCATCAGCTTGGCT 164309 36 100.0 38 .................................... CTCCTACGAAACCCACCTGTCCTTTAGATGTTCCGTCT 164383 36 100.0 38 .................................... AGAAGAAGATGTGTAGGTAAGATTTTTGATCTTGTTTA 164457 36 100.0 35 .................................... ATAAAGTAAACTTTAGTAATTGATTAGCTTTTGCA 164528 36 100.0 36 .................................... ACTTGTTGTGTAGATTAAAGCACAATGCTCTTTGAT 164600 36 100.0 37 .................................... TTCAGTGTAGACAACCCCTCAGCTAATAATTGCTTGA 164673 36 100.0 39 .................................... ATTGTTTAAGGTTATATCAAAGTTTTTAGAGGAAAATAC 164748 36 100.0 40 .................................... TTTCGATATCAAAAACATTTACAGTCTGATCAAGAATATA 164824 36 100.0 35 .................................... GTTATTAAATATTTGTTTATTAATAATATGCTATC 164895 36 100.0 39 .................................... CTATATCATATTCTATTTGATCCGTTGAGAATATATTTC 164970 36 100.0 34 .................................... GAAGTCGGACTTCCTTGAAACCGAGACCAGGAAA 165040 36 100.0 37 .................................... TTCTATGTTGGTTGTCGTAGGGAATAAAGAAAAAGGA 165113 36 91.7 0 ...............................TC..G | A [165140] ========== ====== ====== ====== ==================================== ======================================== ================== 13 36 99.4 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : GCCTTATCGAATTGATTAAAGCCAATCAATCATGTTGTTGTACGTTGTAGCTTATGACATTCCTTGCAACAAACGCCGCAAAAAGGTATCTGATTTATTGGAAGGCTATGGGCAAAGAGTTCAATATTCTGTCTTTGAGTGCCAGTTGACTACAGATCAATATAATGAACTTCGCAAGCGGTTAAAGAAACAGGTAAAATTAACAGAAGATAATGTGCGATTTTATCCATTATCACGGCATACTTTGGCACAAGTGGAAACTTGGGGAATTGGATCACCTGTGATTGAACCACCCAGTTCTGTGATTATATGAGAGCAAGTACCGAAGTTCAGCCCAAATGCTGCAAATGCCTATTGTTGTGTTGTGAACTTCGGTTCTTTATGGGATAAGGTTTTTAGCCTTTTTGGTTGGAGGAATTGAGATGTTTTTGTCTATAAAATCTCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATGGGACT # Right flank : GAGATAAGAAAATATTCTTGACTATTTTTCTATAGAACCTAAAAGTCTTTCCAGCCAACAATCTGAAGCATTTTTCATATATTATTCCGAATATGTACAGAAATTCGACAAAACCAGATAACAATTAATACAATCTAATCTGGAGGCTAAGAAAGGAAAATTACTTGTGTCAGAAGAATATTGGCGAGCGAAAATATGGGGTTTACTCCATGACCCTGTGTTAAAAGCATTGCATAGTAATAGTGGACGTGGGGAAAACAGCTTCTGGCAACAACTAGAGGTAATGCAGCCTTGGATTGAGAAAGGTTGGAACCCAGAAAAATCAAGTGGTACAGCGCTCAAGCATATAAAGCTAGCTGACTACATTGCCTCAGCAAGCGACAGAGGGGCGATTGGTAGTGTGAGCGCGAGTATCAATTATGGTCAGCGTAATCACCGAGAACAAGGGTTAGAAATCTCTCACCTACTATCCGGGGCAAAACGCAATTTTAAAATTAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8055-3657 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVX01000007.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold3.4_C1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8054 36 100.0 37 .................................... GATGACATCAATCTGATTACTGAAACCTTGTCACCAG 7981 36 100.0 36 .................................... TTTTAGGGGTCACAGCACATGATTATTACATTTGGA 7909 36 100.0 34 .................................... GTTTGTTGCACAAAGTCACGGTAGGCAGAAAGAA 7839 36 100.0 35 .................................... GTCACTCCAGTAACTCTTGCTTGTTTCCACCCGTC 7768 36 100.0 37 .................................... CAAATAACTGAACAAGAAAAGAAAGATGTAATTGCTC 7695 36 100.0 34 .................................... GAAATCCAACAACTATCTATTCTGAAAATGGTTT 7625 36 100.0 35 .................................... GGGTCAACTGGGACTAGCACTGGCTCGCACTGCCA 7554 36 100.0 34 .................................... TTAACCAGTGGTCTAAGGGAAACTTGGGTCAGAT 7484 36 100.0 35 .................................... GCTCAGATGGATAAAAGTAGTCTGGTACTTCTAGC 7413 36 100.0 35 .................................... AGATATCCGACAAGGCACTGGATATGGATAAAGTA 7342 36 100.0 35 .................................... TTCTTACTATCTAGCCACTCGGCTAGGGTTATCTT 7271 36 100.0 36 .................................... ATCAAGAAGAGGAATTAAAAAAACCCACTATAGCGG 7199 36 100.0 36 .................................... GATATTATTATTTAGCATCTGAATCTAATTTTTTAG 7127 36 100.0 36 .................................... ATTCAGTTTGCAGAGCGGGGGATTCCCATACAAGAA 7055 36 100.0 37 .................................... TGGTGAGAAACAGTTTATCCCTCACCACCAACTATAG 6982 36 100.0 37 .................................... CCTTGACGATATGCCTACCTTTACTGTCCGGTCTGTA 6909 36 100.0 35 .................................... TTCTGAGTTCCCCCTTGACCTCCGTTGGAACCCTT 6838 36 100.0 35 .................................... TTCTACAGGATTCTCATTTATAAATTGTTGCTCAT 6767 36 100.0 35 .................................... ATTTCTAGTTCTAGAAAAGTAGAAGATTTACAATC 6696 36 100.0 35 .................................... ATTCGCTATGCAATTACTGGGTTTATTCCACTCAA 6625 36 100.0 35 .................................... TTTGTATAATTCCTTTAAGAACGTTTCATCAAAAT 6554 36 100.0 34 .................................... CTCACAAATGTGTAAAAAAATACTGAATTAGGAT 6484 36 100.0 35 .................................... GAAGTCCATTGTTCAAACCGGAGCAACCCCCGGAA 6413 36 100.0 34 .................................... CTGAACAGGCTGAAAGATTAGCTGATGATATCGA 6343 36 100.0 35 .................................... TTAGAAAAAAATGGGGTTGAGTCGGGGAGTAGGGA 6272 36 100.0 35 .................................... GTTTCCGGCGAAAAAATTACTTTAGCGCTAGATGT 6201 36 100.0 36 .................................... GAAAGAAAAACGTGTTTGCGCATCGCATCTCATACG 6129 36 100.0 39 .................................... ACAAAAACAAAAACAAGAATCATGGGGAAACTTCCAGAA 6054 36 100.0 39 .................................... TTACAAAGAAAGACGCGGACTGATAACCAGCGCTCTTAA 5979 36 100.0 35 .................................... TGTACTAGAAGACCAGGCTATGCTAGCCGCATACG 5908 36 100.0 34 .................................... TTCTTGTCAGAGGTTATCTATGCACTGGTGTCCC 5838 36 100.0 34 .................................... GGAATGCAACGAGATAAAATGGGATGGCAAAGGA 5768 36 100.0 35 .................................... GGACTAATGAACCAGATTAGCGAAGGGCTAGGGAT 5697 36 100.0 34 .................................... TATGGTTTCTTCTCGCTCACGCAACTAGCAAGTG 5627 36 100.0 34 .................................... GAGGGGAACCGTCCTCAAACACAAAAGCAATTAT 5557 36 100.0 36 .................................... CGGTTTATAAGTTTCACTTTGGGCAGAACCTTGACA 5485 36 100.0 36 .................................... CTATGTGGGCTGACTTTAGTTCGTCAACAAAAAATT 5413 36 100.0 35 .................................... TTGACGCGGCTGGAGCTATTTCGGTTACAGGAAAT 5342 36 100.0 35 .................................... GAGTTTCTACCTCCCAATGTGGAAGCAGACATTAT 5271 36 100.0 35 .................................... AAGTAATAGCATTAGAACCTGTTTTAGCTTTGATT 5200 36 100.0 36 .................................... AAAGGCTGCTTCATCAACAACAACATCACCTTGTTT 5128 36 100.0 37 .................................... GGAAAAAGGCGGAATGGTGTATGTGCGCGAAGGAAGA 5055 36 100.0 35 .................................... AATAATCAGTTTTTGGCTATTCGCACTACTGGCGA 4984 36 100.0 36 .................................... GGCAAACCCTGGGAGAGGCAAACGTGTTGTACGCAA 4912 36 100.0 35 .................................... AAGCAATTGAGAAAGCAAAATCTGAGATTGATAGG 4841 36 100.0 37 .................................... CTTCCCGCTTTAGGGTTTGGAGCAATCACAACAGGAT 4768 36 100.0 36 .................................... ATGCAAGGTAACGATAAAGCCCGTATTTTATGTAAA 4696 36 100.0 35 .................................... TATGGGATAAAAATTAAAAAGGCAAATTTACTGAA 4625 36 100.0 35 .................................... TGAAGATGACACTATCATGATGTCGTGTGCAAAGG 4554 36 100.0 39 .................................... ATTCTCAGTCTGGTAAATATCGAAGCTTTGAAAAAGCTT 4479 36 100.0 35 .................................... GTTAATAACACACTTAAACCTGTTGGTTTTGCTAG 4408 36 100.0 37 .................................... ATAATTTATTTTGGTGATGAAAATGAATGTATTTTAA 4335 36 100.0 36 .................................... ACAACGGGGATTTAGTTTTTTACCCCAGTCCTTACA 4263 36 100.0 35 .................................... GGGAATCAGGGAACCCCATAATCCAAGGACTACTA 4192 36 100.0 36 .................................... TTAAACTACCGAAGACTTTAGGGGAAAGGCAATTAA 4120 36 100.0 34 .................................... AAGTACCTTAAGTGTCCGTTCTGTGGTTCTAGTC 4050 36 100.0 35 .................................... CTCAAGATACCTGGAATTGGCTCAACTCAGTTGGA 3979 36 100.0 36 .................................... CATACCCGTACCTACATTAAAATAATTTTCAAAATT 3907 36 100.0 37 .................................... TCTTTCTAACTTCTCAGCCTCGTTAGATGCCAGATTC 3834 36 100.0 35 .................................... TTGGAATATGCATAAATATTTCCCGGAACAATCAA 3763 36 100.0 35 .................................... TTTGATCATGAGTGGGGAGAATCTGAAGACAGTTT 3692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 62 36 100.0 36 GTGTCCAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Left flank : AAGCTTACAATCTACTCCAAGGATACGGAGAGCGAATACAGTATTCAATATTTCGTTGTTGCTTGACACAACGCACACGGGAAAAGTTACGTTGGGAACTCGAAAAGGTATTAGCAAAGGAAGATAATTTGCTTTTGATTCGGCTGTCACATCAGTGTGTTGCAGCGATACCGAGTTATAACCGTCCAAATACGTGGTTGTGTCCAGAGGGATCATATCGGATTGTTTGATGCATGGATATGCGGTTGTTAAAAGAAACAATTGTCAAAAATCGGCTCAATGTCTTATTGGGAAAGTGTTTTATGGTTAAAAGAAGTGTCGGAGGTGCTTGCATTCTGGCAAAACATGCTATCAGCTAGGCAATACAAGCTTTTCATGATTTGGCTGCTTTACTTCGAGTGAAAATTCGGTACAATTTGACTGGTTTAAATCCAATTTGGAAGGAAGTGCTTGTAAAATCAAAATCCCATGTTTGTCAGGTAAGGATTTCGAGCAACGCC # Right flank : AGATAGAGGTCCAAGGCTACGACCCCAACAAGCGATCGCCGAAATCTTGACTGGATGAAACTTTTAATCTAACGCAAGCCGTTTTTGGTCGCTTCGTGTCCACTACACCTAATTATTGGCTATGTTCTTTAGACCTGTTGCTTCCTTTTCTCTAACATCTTCGCCTCTACCTTGCTCATTATCCTTCTTAATAGGATTTCGATGGTGATGGCGAAGGGCAGTGCTGCGATATGAACCGATTGGAACGCGTGTCCCTGCAAGGCCTCCGCAATCATCATGTAAATTACTGATGCCCAGTTTGCCGAATTGCCCACTACTAAAATAGCTCTCACCAGCACTGGCAACAGATCTGTAGTCATCCATCGGTGAGCGATATAAGCACCGTACAAGATGCCGGCAATATCTATGGCGGCTTTAAGTTCCCACGGAATGGCTGGCAGCGAAAGGTAGTACATGGCGATCGCCGAAACCCCTGCCGATAGCCCTATCGTTATGATGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3599790-3598426 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE650771.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3599789 37 100.0 37 ..................................... GTTAGTCCCTTATATATAGACGCCAACAAACTTTGAG 3599715 37 100.0 37 ..................................... TTTCGATGATTTTTTCGATTGACTGTTGGATATTCTC 3599641 37 100.0 39 ..................................... GCATTGTTAAACGCTTCAACACCACCAAAATCTGATAAA 3599565 37 100.0 35 ..................................... AGGAACTACCCGGAATACCCGGAACGAATTCTAGA 3599493 37 100.0 38 ..................................... CAATCTCGTTATGACGCAATCCAAAGCTACTGATAAAA 3599418 37 100.0 36 ..................................... ATGCGCTTATAGCCATTAAAAATGTCGAATATTTTT 3599345 37 100.0 34 ..................................... TTCTATCCCTTCAATTCTTCTGGCTAAAGCCTCG 3599274 37 100.0 35 ..................................... AACCCTCAAATTAATGTGTCGAACGAATTATTTAT 3599202 37 100.0 37 ..................................... AGAAAAGAAAGGCTAAAATCAATGACTCGAACAATTC 3599128 37 100.0 39 ..................................... GTTTCAGTGGCCCTACCCACTGAATTTGCCACAATCCAA 3599052 37 100.0 38 ..................................... ACAAAATCTCCTCCAACTCCTGTTATACCTAAATTTTG 3598977 37 100.0 38 ..................................... GGTTTCTATTCCTGTTCTAATGATGTACACCTCATCAG 3598902 37 100.0 38 ..................................... CTAGAAGTCGGCATCTATTGATGCCTTAACACCAACAA 3598827 37 100.0 35 ..................................... TTTATACTGCTCAATCATTTTTTCGACTTGCTCAA 3598755 37 100.0 37 ..................................... GGTGGCATGAGCGTAAACATCGCTCAGTTGCCAGAGA 3598681 37 100.0 36 ..................................... TCTAGCCTAAAGCTTTTTTGTAGTCATCCCAGGAGG 3598608 37 100.0 37 ..................................... CGACGACAATAACCTGACCCAGTCTTGGGTGCTGATA 3598534 37 100.0 35 ..................................... TATCACAAGTGCATATGCTTATAGCCCAGAAACGG 3598462 37 94.6 0 ..............................C.A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.7 37 GTTTCTAACTCGCAAAACCCCGAAAGGGGATTGAAAC # Left flank : TAAAGTTCCAGGCTAATAGCTTAAGTCCACTTCATGGACTAAATCGAATTTCTCTATGAGTCCTCTTCAGAGGACTTGCGCTATGAGACTCGGAATTTATTCCGAGGCGTACATATGCGCTCAACCTGGATTTGTGTGTACACCGTAGCTAACGGGGAGAAAACGCTAGAATACTAAAGATATTGCTGTTGATCGCCTTGCCCTTTCCATAAAACTTCCCCTTAAGAGGTGCGGGTGTGACAATTAGTCAAAATCTTGACAATAACATCAAGCTAGTATTACCCTGAATGTATGAGATTTTTGGCGCGTCTAAGCGGGGTCAAAAACCCTGGAGGTCTGCCAAAATCCCCAGAACCTAGACAAGTTAATAATTACAGCGTTTTCAATATCTGGGAAGTTGCAATTTACTTGCAATAAGATGGGCTGAAATAGACTTATTTTTGAGACCTGCCAAAATCGTTCCCAGAATGCTTACTCTGCAACAGTTTCAGTATGGTAGG # Right flank : ACTGACCCGTCTCGCAAGCAAATGTTGCTAATCTTAGATCTTGCACTTACCCCATATCCCGCCTGAGAATTAATTCTCAGGCTAATAGCACAAGTCCGTTTCAACGGACTCAAAGACTTTCTTAGTCAGATTTATCTGACTTTGGCTATTAGCCTGTGAAATTTATTTCTTGGCGGGACGGAAAGTTGGTGCAAGAGATGATAGCAATTTGAAAAAAGAATGCGACAGATAAATTTTGTTGTAGAGACGCGATTTATCGCGTCTCATATCCAGATGATCGCGTCTCATATTCTGAATGTGTCGCAAACATTTTTTGAATCGGGATAAATTGAAACGGACTCAAAGACTTTCCTAGTCAGATTTATCTAACTTTGGCTATTAACCTGTGAAATTTATTTCTTGGGGGGACGGAAAGTTGGTGCAAGATATAACTTCGCGATCGCACACCAAAGCCGTGATCATGGTGCGTTAGGCGCTCATATAATTTTTTCATGAAAAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACTCGCAAAACCCCGAAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 4853490-4852205 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE650771.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4853489 37 100.0 36 ..................................... GGTTGTAGCTGTTGTGCTTTGCCCGACGTTTTACAC 4853416 37 100.0 37 ..................................... ATAGTTTCAAATGATATTGCCCCTCGAAGTTGCCTAC 4853342 37 100.0 35 ..................................... TATTCATCCAAATAGCCTCTTAGCCTGCATTCCTG 4853270 37 100.0 37 ..................................... CCACCAGGCGCATAAGCAGAAGATGCACTTACCAATG 4853196 37 100.0 36 ..................................... ATTGCTTATATTGTTTTGTAGACAAGTTGTAGACAG 4853123 37 100.0 37 ..................................... TTTTCAAATAGTCATGCGCGTCAATCATGATTATTTT 4853049 37 100.0 37 ..................................... TCGCGAAGGGGGAAGTTGCTGGGAGCAAAAAACACAA 4852975 37 100.0 36 ..................................... GAAACCAGATCGATTTGTCAACTAACTTAACTAATG 4852902 37 100.0 36 ..................................... CAACATAGCCACCACCTCCGCCTCCTCCTCCCCCAC 4852829 37 100.0 37 ..................................... CTTCCCCACCTCTAATATTGAGCAAACAATATTAAAA 4852755 37 100.0 37 ..................................... TTGCGAATTCCCTTGGTACTTATTTTTGCGCTAGAGG 4852681 37 100.0 36 ..................................... ATCCAATTGATTGTAGTATTGTAAGAATTCTCCCCA 4852608 37 97.3 36 .......C............................. AAACTGATTGCTGCATTAGAGGAAGTTCAGTAACCC 4852535 37 97.3 37 .......C............................. GACAAAGTAGCAGTCACAGTTGACAACCCAGATTGAA 4852461 37 97.3 35 .......C............................. AGTCCAACAATTGCCATATGTTTTTGTGTTGTGGG 4852389 37 97.3 37 .......C............................. CTGAGAAGTTGAGCGAATTCTAGGGGCATTTTTACAA 4852315 37 97.3 37 .......C............................. CAGCTTTTTGAGCTAAAAATCAAAAGCGTGGGCTAGG 4852241 37 94.6 0 .......C........................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 98.9 36 GTTTCTAACTCACAAAACCCCGAAAGGGGATTGAAAC # Left flank : TAAAGTTTCAGGCTAATAGCTTAAGTCCACTTCATGGACTAAATGGAATTTCTCTATGAGTCCTCTTCAGAGGACTTGCGCTATGAGACTCGGAATTTATTCCGAGGCGTACATATGCGCTCAACCTAGATTTGTGTGTACACCGTAGCTAACGGGGAGAAAACGCTAGAATACTAAAGATATTGCTGTTGATCGCCTTGCCCTTTCCATAACAGTTCCCCTCAATAGGTGCGGGTGTGACAATCAGTCAAAATCTTGACAATAACATCAAGCTAGTATTACCCTGAATGTATAAGATTTTTGGCGTGTCTAAGCGAGGTCAAAAACCCTGGAGATCTGCCAAAATCCCCAGAACCTAGACAAGTTAATAATTACAGCGTTTTCAATATCTGGGAAGTTGCAATTTACTTGCAATAAGATGGGCTGAAATAGACTTAATTTTGAGACCCGCCAAAATCGTTCCCAGAATGCTTACTCTGCAACAGTTTCAATATGCCAGA # Right flank : GCCCCATTACACAGTAAACAGCAAATCATAACTGAGCAGATAGGTTAAATAACCAACCCGAAAAGACTACTGACTGGAACAGCGTCAACTGGAAAAGCGCCAACCGAGTAGTCAGGAGACTTAGACAGACAAATTTCAAGGCGACCAAAGACGGTGACTTGAAGAGGGTTCGCAACCTTCAAAAACTACTAATGCGTAGTTACTCTAACATTGTACTTTCGTGAGACAAGTCACACAATTAAATTCTGGCAATCAAACAGCAGGTGTAAAATATTAAACAGTTAAATACTTCTTTTACAAAAACCGCAAACATATGGGTGAGCAAAACTAGGGTAATAAGTATGGCTAAAGCAAAGAAATCGGAAAACGTTCCCAATACGATGCTCTCAAAGTTCGATGCAATTGTAGCGATCACAGATGATTTTGCCAAACAGCATTTGAACGATGAATATGCCCAATTGATTCGCTTTGCAACAGCAGCTTTGTGTCGCAAAAGACCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAACTCACAAAACCCCGAAAGGGGATTGAAAC # Alternate repeat : GTTTCTACCTCACAAAACCCCGAAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 6167383-6167709 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE650771.1 Fischerella sp. PCC 9431 Fis9431DRAFT_Scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6167383 37 100.0 34 ..................................... AATTATCAGTTGTAAGACGTTTTAACAATACGAT 6167454 37 100.0 34 ..................................... TATTGAATTTGCTGGTAAGAATAGATGGGAGTAT 6167525 37 100.0 36 ..................................... TCTTCTAAATCTCCTAATGCTATTTGACTACTACGA 6167598 37 97.3 38 ....................A................ TTCTGACAATGTTGTCGGAACTACTCAAGCGCTACGGG 6167673 37 97.3 0 ............................A........ | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 36 CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TTGTTCTACCTCATAATTTATGATTTGCCTGATAATAAGAAGGCGAATAAGCGGCGAACAAAACTCCATAAAATGCTCTCTGGCTATGGAACTTGGACTCAGTATAGTGTGTTTGAATGTTTTTTAAATGCTGTACAGTTTGCTAAATTGAAGGTGCAAGTTGAAACCTTGATTAAACCATCTGAAGATTCAGTTCGTATTTATGTTTTGGATGCTGGAGCAGTACGTAAGACTATTACCTATGGTTCTGAGCAACCACGACAGCAAGAGACGATAATACTATGATGCTAATATAATATTAAGTGAACTTTTGGCAGGGCAAAGCACAGGCAAAAACCCCCTACCTCCCGCCAAATCGCCAGAACCTTGACAATTCAATAGTTTCAGCAGTTTAAGTATGAACATAGAGCCTAGTCATAAACGCCGGAAACGGACTTTTAAAGTAGACCTGCCAAAAGTGGAATTGAGAATGGCTCTGTGATTAACTTCTGGCTGGCGGA # Right flank : CTTGCTAAAGGATTTAAAACCTTGGGAGCTACCATTCGTGACAGATTAAAATAGTGACTCATTTGTCAATACGTCATATGGTATAAAAATGTCCGAAAAATCGTGAGAGAAAACATCATTTTTGGGTTAGCGATGCCAAAGGCAAGCCGCTCTGCGTCTACGCATGATATTTAAACGCACCATTCTTTTTTGCTCTCAAAACCCAGTACAAAGACAAGCTTGATACCTCATTCTCACTCATTTTTCAGCATAATTTTTAATTGACAAAATGATATCGTCTTAATCTATCACGAATGGTATAGGGCGATCGCGTAGCGGCTCATGAAAGAGCATCACTCTTTGAAAATCGCCTCAGAAAAATTTGAGTATCTGCTTTTTTCTTGTACAAGGGCGATCGCGCTTTGTTTTAGTACAATTGTACTGTAAATGGTGAAGTTGCCCTAGTCAAAACACTGATGTTGGATGCTTCCTTATTTTTGCTGGAAGCATCTTTTTGTTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATAAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //