Array 1 496914-497721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMZ01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07228 WH-SGI-V-07228_contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 496914 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAGCATCGACGG 496974 28 100.0 32 ............................ TCCAGGTAATCAGCGTACCACTGCATCATGAC 497034 28 100.0 32 ............................ ATTTCCACTTCTGCTGCGGCCTGGGCGGCGGT 497094 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 497154 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 497214 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 497274 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 497334 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 497394 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 497454 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 497514 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 497574 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 497634 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 497694 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38751-39258 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMZ01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07228 WH-SGI-V-07228_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38751 28 100.0 32 ............................ TACATCGCCGCCGCGCTGCGCCTGGTCTGCTA 38811 28 100.0 32 ............................ ATGGTGTCGGTCCAACCCCACAGATAGCCCGT 38871 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 38931 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 38991 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 39051 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 39111 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39171 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39231 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTAAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48713-47785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMZ01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07228 WH-SGI-V-07228_contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48712 28 92.9 32 C.A......................... AAGGTCGAGGCGCTGGCCGAGCCCAGGGTGAT 48652 28 100.0 32 ............................ CCTCGGTCGGGCTGCGCCTAACGTAACGTCTG 48592 28 100.0 32 ............................ TATCAGCTCAAGCAGGCCATGGACGAACTGGC 48532 28 100.0 32 ............................ ATCCAGTGCGTCGTTCTGATAGGCGTGGATGA 48472 28 100.0 32 ............................ TGGGCGTCAAGGCCGTACTCGACTTCATTAAA 48412 28 100.0 32 ............................ ACTGACGACCGTCACGCTGACCCGACCGGAGA 48352 28 100.0 32 ............................ ATGTCCCGACCGTCGCAGGCCGTCAGCGCGTT 48292 28 100.0 32 ............................ GCCCTGGGCCGCCTGGTCGAGCCGACCGATGT 48232 28 100.0 32 ............................ TCAGCGAGGTGACTGTCCGCCTCGGCTCGAAC 48172 28 100.0 32 ............................ AGTTCTTGCCGAAGCAAGAGGCCATGAACTCG 48112 28 100.0 32 ............................ AAGGTGTTGCAGCCCGGACAAGGCCAAGACTC 48052 28 100.0 32 ............................ TCGTCGACCGTCGCCTCGTAGTCGGCCTTCAC 47992 28 100.0 32 ............................ ATCGCCGGCATGAACGAGGCGCATGCGAAGTT 47932 28 100.0 32 ............................ TGGCCGTAACCCGTGGTCAGGCTGAGCGGCAC 47872 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 47812 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGGCACCTCTCTCACGGCAAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACC # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //