Array 1 217426-217950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059706.1 Flavobacterium psychrophilum strain FPS-F22 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 217426 42 100.0 27 .......................................... ACTGAAAAAAGCACCATCTTCAATATC 217495 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 217564 42 92.9 27 ...T...................T....A............. GCCTGCAAAAGACCCTTCTCCGATAGT 217633 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 217702 42 100.0 27 .......................................... ACTGARAAAAGCACTATTTTCAATATC 217771 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 217840 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 217909 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 95.8 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GGTTAGCCGTTCGAAGCTAACCTTTTATTGTGTAAAATATTTTTTTTAAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTTTCCAATAGC # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTAAAAAATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTGATTTTGCTGTTCTTTTTGTTATATTTGGCTTTGCAAACGATTAATTAGGGACTAAAATTCATCAAAATATTGCTTAATGTTCTTTTTTTTATTTAGAAGCTTTTTTTGTATAATGTTATGAATAGAAAAAGGTTAGCCGTTCGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1161810-1162046 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059706.1 Flavobacterium psychrophilum strain FPS-F22 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1161810 36 97.2 31 .....T.............................. TNTTTTTAACCACAAAGTGCACAAAGGTTTT 1161877 36 100.0 32 .................................... TGTTTTTTAACCACAAAGTTCACAAAGGTTTT 1161945 36 97.2 30 .R.................................. KTTTTTAWYYWYAAWGTKYWNWWWKKTWWY 1162011 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ================================ ================== 4 36 97.9 31 CACAAAGTTCACAAAGTGTTTCTTATGTTTTTTTTT # Left flank : GTGTTTTATAAAAGCATCTTCCATTTCAGGTATTGAAACTTCGTCGATTAAATAGGAGCGAAGCATGTTGTCTAATCCCAATCCGAATTTTGCCATCACAAAACTATCACAAGGTATATCGGCTTGCAAAGAGCCTGAAGTGCCTATTCTAATAATATTTAAAGAAGTAAGATTTTCTTTTGGTTTACGAGTTACTAAATCGATGTTGACTAAAGCATCTAATTCGTTCATTACAATATCTATATTGTCTGGACCAATTCCTGTAGACATTACTGTAATTCGTTTGCCTTTTATTGTTCCTGTTTGAGTTTTGAACTCTCTTTTTTGTGTTGAAAATTCGATGCTATCGAAATGTTGTGTAATTTTTGATACGCGTTCTTGGTCACCTACAAAAATAATGTTGTGTGCTATATTTTCAGGAAGTAGGTTTAAGTGATATACACTTCCGTCTGGGTTTAGTATTAATTCTGATGATTGTATCATTTTTTTTGTTTTTTAAC # Right flank : TTTGAGAAATCTAAACTCTAAAATTGCTTATCCTCCCACACGTTTTACTTTAAATCCTTTTAGTTTCAGTATTCCCATGATTTTATCGCGGTAATCTCCTTGAATTATTATCGAATCGTCTTTGAAAGTTCCGCCAACACTGAGTTTGGTTTTTATTTCTTTGGCTAAAATTTTAAAATCTTCGTCACTTCCTTCATAGCCTTCAATAATTGTGGTGGCTTTTCCTTTTCGTTTTTCGTATTTACAAATCATAGGTTCTTTTTGAACGTATAGTTCGTGTTCTACTTCTGGAATTGCTTCTTCTGGAGCTGGCTCGTGATTTGGGAAAAGGTTTTTTAGTTGGTCTTGTAAGTCCATAATTTTAATGTTTTTTGAACACAGATTTGAGAAATTTGAGAAATCTTAATACTTATTATGTTTTTTAAATTCATTTGTAAAAATCTTTCTAATAAATTGTGGGTCTTTTCCAAAGTTTAATAACAAACCTACTTCACAATCTG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACAAAGTTCACAAAGTGTTTCTTATGTTTTTTTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1327105-1325612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059706.1 Flavobacterium psychrophilum strain FPS-F22 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ================================= ================== 1327104 46 100.0 30 .............................................. YTWYKGVRYGAAATMCTRKAAGYCARRYCT 1327028 46 100.0 30 .............................................. ATMWRMANAYKKAATWWATGKWAAAWKCKA 1326952 46 100.0 29 .............................................. NTWYAGYKWAATMSMWSGWAGTACTATTG 1326877 46 100.0 29 .............................................. CAAAATGGAATATAGCGTAGCCSAYYTKY 1326802 46 100.0 29 .............................................. WTATTGMRACSKTWKACYTKRAANYWTMK 1326727 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 1326651 46 100.0 30 .............................................. TTTCATATGAATWSSYYRRMGWSYGSTANA 1326575 46 93.5 32 ...........................................NNN NAACTTSWAYAYAAWMAAACNNAGAGTACATC 1326497 46 100.0 32 .............................................. TCATTAACCGACACCGTTATATTMCCNNSKRW 1326419 46 100.0 28 .............................................. RCATTGTCTMGTATCTCRMMATCKWTYC 1326345 46 100.0 33 .............................................. AANNNTATGCAACTTACGGATTGTTNNNNNNTC 1326266 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 1326190 46 100.0 30 .............................................. NANWWWCTAYTTCGMMMCATGGTGCTACAG 1326114 46 100.0 31 .............................................. TGACTGGGCAAAAGTAGCCGTAATAYACWCN 1326037 46 100.0 30 .............................................. AYAAKNGAAGTYCAAARMAYRAAYGAASMA 1325961 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 1325884 46 100.0 29 .............................................. YSMAATYNATMTYMRMTRTTAATGSCRAR 1325809 46 100.0 30 .............................................. TMTRYRWTYAWTWYWYMTGCRSYMCANYMW 1325733 46 100.0 30 .............................................. NNNNTAKSYAGAAAGTCCTTCGGTAATATT 1325657 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ================================= ================== 20 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : AAACTTGTTTATACAGCACCAACAAAACAAGCTGCTGCATTAGCTTTGGAAGATTTTGCTCAAAAATGGGAATCCAAATATGGTTATGCCATCAAATCCTGGAGAGAAAACTGGGACGAATTAACCGTGTTTTTCGACTTCCCGCTAGAAATTCGAAAAATAATCTATACTACAAATTTAATAGAAAATTTAAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTNNNNNNNNNNNNNNATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAACTGGTTTGTTCCTTCGGWRWMARGAMWTYGN # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //