Array 1 218864-218509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028105.1 Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 218863 29 100.0 35 ............................. TAAGTGGTGCTGAAAAGATAAAAGCAGTAGATAAA 218799 29 100.0 38 ............................. CAAATGCTGCTCTTCCCCATCTGTTAGCTAATACAAAA 218732 29 100.0 36 ............................. ACAGGTTTATTTAATGGTATTTTATAAATTTTAAGA 218667 28 93.1 37 ..............-.............A AGAAAAGAAGGTTGAAATATACCTTCTTTTTTATTTT T [218642] 218601 28 82.8 37 ....A..T...-..A.A............ CTTCTTTTCATTTCCTCTTTATTCAAAGTTTTCCAGG 218536 28 86.2 0 .C..A..T......-.............. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 93.7 37 TTGACTAGTAACTTGATAAGTTTTTAAAT # Left flank : ATACCTGCTCCAGTAATGGGAGGGGTTTCAATAATATTGTTTGGAATGATTTCATCAGTAGGAGCAAGAACATTAGTAGATGCAGGATTGGATTTTTCTAACTCAAGAAATCTTATCATAGCATCATTAATATTTGTATTTGGAATAGCAGTAGATAATATTGTTATCTGGAAAACAGTTTCTCTTTCTGGACTTGCACTTGCAGCTCTTGCAGGAGTAGTTTTAAATAAGGTTCTTCCTTTAGATAGAGAAGTAGCAATAAATAAAAAAATAGATTAATTTGAAAATCCATTGATCATGCAAAATTTATGATTGATGGATTTTTTATTTTCCAAGGGAAAAGATACCAATGGAAATTAAGTTAAGAAATAAAGATATAAATAGAAGAGAAAAATAAAAATGAAAAAAATCTTTGTTTAGGTTGGAAAAATAAATATAAAGTGGTATAATTAGAGCAATGGAGAAGCTAAAGGAAAAAAGAAGTTGTGAATTGCTGAATA # Right flank : GTATTCTTTAAATATATTTTTTTGATTGAATAAATAAATTTTTAATAATGTTCTCATTATTTTTTTATAATTTTCAACATAATTATCACATTTTTTTAACATACAAAAATATTAAATTTAATGTATGTTAATTTAATTGTCGAATTTACACGAATAAATATTTTGTTTTAAGAATGTTTTAGAAAAAATAAATGTCATTAAAAAAAGAATTTTAAAAAGAAAAATAAAGATTAGTTATAAATTATAATACTTAAAATTTTTTAAAATAAAAAATCACAGATATTAAAAACATCTTTGGATAATGCAGCAATAGAAAGTATATATGAATAGTCATGGATAAATTTCTTTGGGGAAAAATACTCCTGTGATAACAATTAGGAGGGATAAAAATATAAATATTATTTAGTAGAAAGCATAATTGCTGTTGATGTAAAGTATACATGATATTTCAAGGGTACTTTAATGGAGAATTTTATTTTTTATTTTAATATAATTAGGAG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGACTAGTAACTTGATAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 3066814-3065688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028105.1 Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3066813 29 100.0 37 ............................. ATAATATTTTTAAAATGTGAAGTAAGATTATTTTCTA 3066747 29 100.0 36 ............................. TTGGCATTTAAAAACTACTCAGTTAATATTCTACTA 3066682 29 100.0 36 ............................. ATTTTTCAGATATTTTAATTTCCACCTCTTCTGCTT 3066617 29 100.0 35 ............................. CAGAAATAATAAACTATATAAATTTAACTGTAAGG 3066553 29 100.0 35 ............................. CTTCTTGGAGCTTCTGCTTTAAAAAGCAGTGTAAA 3066489 29 100.0 37 ............................. AAGCATTTTCTTCAAGTTCTTTTTTACAAGTAACTAT 3066423 29 100.0 36 ............................. CTTTTTTGGGGGAAAGAGGTTGGAAAATAAGACTTT 3066358 29 100.0 36 ............................. TTATCATTTTCAACTTCCCTTGAATTCTCTTCTCCA 3066293 29 100.0 37 ............................. TTATTTCTCCTTTCTATGCACTATGCAGCAAAATATC 3066227 29 100.0 35 ............................. TAATCATCTATTGGAAGATATCCTTTGTGAAAATT 3066163 29 100.0 37 ............................. CTTCTGCTTCAGGATTCAGCATTATATCTATTCCTAA 3066097 29 100.0 35 ............................. GACCGACAAAAAGGTAGGTATAGAGCTATGGTAAA 3066033 29 100.0 36 ............................. CTGTTGTTACCTCAGGACATTCAACTGGAAAGACTG 3065968 29 100.0 35 ............................. ATCATCTAGCTCATTTACATCTGTTTCTACTCCAA 3065904 29 100.0 36 ............................. CTTAAACATTTTAAAGTTACAGGTTTTTGAGATATA 3065839 29 100.0 35 ............................. GCAGCAGGAGCTGGGTCATCAGCACTTCTAATTTT 3065775 29 100.0 28 ............................. CCATTTGATCCACAAGAGTATATGCAGA Deletion [3065719] 3065718 29 96.6 0 .........................C... | TT [3065691] ========== ====== ====== ====== ============================= ===================================== ================== 18 29 99.8 35 GTATAACAGTAACTTTGAAGTTTTTAAAT # Left flank : GAGGGAAAAGAGTTTGTTCCGTTCTCTATAAAGGAAAAGATGTAGATGAAAGGTAAAAACTATAACTATATATTTCTTTTCTATGATATAAATGAAAAGAGAGTAAATAAGGTTTTCAAAATATGTAAAAAATATTTGAGTCACCATCAAAGATCTGTATTTCGTGGAGAGATTACACCTAGTAATTTAATAAAACTACGTTTAGAATTGAAGGATATAATTGATAAAAAGGAAGATTTTATAAGCATTGTGAAACTGGTAAGTGAACATTATTTTGATGAGGAAATAATAGGAACACCTTGGAAAGATGATGAAAATATGTTTATATGATTTCCAAGTTAAAAAACAGATGAATTTATGAAGTGATGATTTTAAAGGAGAATGAGAAGAAAAAAATTAATTGCTGAATTTTTTCTCTCTCTTGGAAAAAAAGTGGTAAAAAATTCTTAAATTCTTTGTTAAGAATGGAAAAGAATAAATAAAATGCTTATTTGATGAAG # Right flank : AATGTTTATTATTTTTATCTACCCATATTAGCCTTATTATAATAATTATAGCAACTACTATTATTATTTGTAATGCTGGTGGGGCATTAAAAAAGAACAGGAGTTCTCCTAATCTTTGCAATAGGAATACCCATGCAAACCATAAGATTGCTAAACCTATCAATATATTTTTTAATAGTTTCATAATTTCACCTCTTTAAGGTATATTACCATAGTTTCAATAAATATGCTATTTTAAATCAACTAAAAAACTGCACTCTTTATCTTAGCCATCTAAGATTTTAGGTGCAGTATATTTTTATCCAGCTGAAATATTAGCAGTTCCTAAGAATTGATTTCTAAAAAACAAATACAAAATCTCAGTATCAAGAGGGCTGTATTTAACAATAACCTTTTTTCCTTCTAAAGTATTTAAAGAATTGTTAGTGTAGATAAAATTATTAAATCTCAAAGAAGATTTACTTATTTTTCTACTAGCTTCCTGAAGAAAAATATCAAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAACAGTAACTTTGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 3075778-3077293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028105.1 Fusobacterium ulcerans strain ATCC 49185 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3075778 29 100.0 35 ............................. TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA 3075842 29 100.0 36 ............................. TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA 3075907 29 100.0 34 ............................. TGGCTACATATTTACTAGAATAATCTATAAGCGA 3075970 29 100.0 36 ............................. CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT 3076035 29 100.0 36 ............................. AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA 3076100 29 100.0 36 ............................. TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA 3076165 29 100.0 36 ............................. GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT 3076230 29 100.0 35 ............................. GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA 3076294 29 100.0 36 ............................. AGAGAAATAATCATGGACACTCTACCCTAAATACAT 3076359 29 100.0 36 ............................. TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC 3076424 29 100.0 34 ............................. GAACTGATATAAACGAAATTTTAAAGGTATCTAC 3076487 29 100.0 36 ............................. GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC 3076552 29 100.0 36 ............................. AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT 3076617 29 100.0 36 ............................. TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA 3076682 29 100.0 36 ............................. ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT 3076747 29 100.0 36 ............................. AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC 3076812 29 100.0 36 ............................. TATGAAAGAGATTAAACATGATGATGAATGGCTTTG 3076877 29 100.0 36 ............................. ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG 3076942 29 100.0 35 ............................. TAATAATATAAAATAATTATTTAAGAGACTAAAAA 3077006 29 100.0 36 ............................. GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA 3077071 29 100.0 36 ............................. TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT 3077136 29 100.0 36 ............................. TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA 3077201 29 100.0 35 ............................. TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC 3077265 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 24 29 100.0 36 ATTTAAAAACTACTCAGTTAATATTCTAC # Left flank : ATTCCTTCGTTATATTATCTTTTAAATATTTCATAAAATGCTCTTTTAATTTTTCAGAAATAGTTCTTATCTGTATTGTATATATTTCTCCAGCATTATACTTTTTAGTATTAACTTTTACTGGATAAAAAGAATTAAAACAATACTCTTTCACTTTTCTATCTTTATGATACTCTTTCCAGTACTCATCCTTATCAAAAGTAGAATCTATAAAAGCAGCTATTTTTTCTATGGTTTTATATGGTTCTATATCTTCTAATAAAAAGACTTTCAATTCTAGAATCCAACTTTTCATTTAATCCCTCCCTTTTAGTCCTCAATAATAATTATACCTCATTTTTTGATAAATAATAGACTTTAATTCGAAAATTTTAATTTTTTTTATTTGGTTTATCCTCTCCTTTGATTTTAAATTTTTTAATGTGAAAAAGATTGTTTCACACTTTTTCTTTACTATTCTATTTGGCTGTTTTTTACAAATAAGTTTTTGCTTAAAGTAT # Right flank : CGCTCATAAAATCAAACTTCACAATATTTATCAATCTCTCTATTCATGATTTTATCAAGCTTTTCCTTCTTTTTTTCCAAGTGCAGTAAAATTTTTATAAAATAATTTTTTCCTTCCAAATTGCTCTTAAAATATACCTTAGAAAAAATATTCAATTTTCCAGCTTGGAAACTTCTTTATTTTTAATCTACTAAATTCACTCCATACATAATTCCTAGTGACCCTTTTTTTATCTTAATATTCATAGTCTTTTTCCCTAAATATTTATCATAAAAATCCTTTTCAATAAGGAATTTTACTTCCTCGCCATTTACATCTGCTATCATATAGTAAAAATTTATATAATATTTACTTCCTGGTTTTTTAAAATATTTTTTCTGCTCTATAATCATTTTTATAATTTTATAGTCTTTTTGCTCTCCCTTGCTCCCTATTCTATTGATAAAAAACTTTATTCTCATATAGATATATTTAGCAATAAAGCTTCCCAGCCATAATCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAAAACTACTCAGTTAATATTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //