Array 1 4992-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_RLII01000025.1 Acetivibrio mesophilus strain N2K1 seq25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4991 37 100.0 37 ..................................... TAAATTAATGGGTTTTTCTAACTTATCTGAGTTTATT 4917 37 100.0 37 ..................................... GATAAAGAAACAGACAAATCAACAGACCTTTGCCCCG 4843 37 100.0 36 ..................................... TTATCTGTAAGCTCAGTATACACAAAACCAAAAGTT 4770 37 100.0 38 ..................................... TGATTGTCATGCTTATCTAAACCACAAAACAAAGCATA 4695 37 100.0 37 ..................................... TATGGAAAGGCATTTTCAATAGGCGCTGTAGTTATTG 4621 37 100.0 36 ..................................... ACAACGTAAAATCTCTTTCCCGCAACATCTCTCAAA 4548 37 100.0 38 ..................................... CATTTGTTTTTATTTCTTCCCAAGAATATTGTTTTTTG 4473 37 100.0 37 ..................................... CCCAACCTTCCGAGAAGTTCATAAATTCTTTAGATTG 4399 37 100.0 37 ..................................... TTTTCACCATAGATCAAGACTACACAAAAAGGCTCAG 4325 37 100.0 37 ..................................... ACATTTAATAACCCCCTTACTGAATTTGTGTATATTA 4251 37 100.0 39 ..................................... TTTAACTCCCAAACATTTTTTGTAGTCCCATTCTTCACC 4175 37 100.0 39 ..................................... CGATTGTTCCGATTTCGCCATTTTGCTTCTCATATTCTT 4099 37 100.0 36 ..................................... TCAACCACTATTTTAGCCGAAGGCAACACTTTCTTA 4026 37 100.0 35 ..................................... GCCATAGCCTGTGTTTTTCTAGAATGTCATTAATA 3954 37 100.0 36 ..................................... ATGCAGAAACAAATGGATTATGGGGAAAGGCATTTT 3881 37 100.0 36 ..................................... AACAGATAGTAAGAAAGGCAGGATATACAATAGGAG 3808 37 100.0 35 ..................................... ATGACTACGAATATACTTACGGGTACGGACTTATA 3736 37 100.0 35 ..................................... TAATATTTTGGTATGAAATAGGGCTGATAGGCTCA 3664 37 100.0 39 ..................................... ACCGATGCAGGAGAAGACGGAATTCCAACCCTTGTCAAC 3588 37 100.0 37 ..................................... TATTATTAGTGATACCTTAATAGAACATCTGCCCTCC 3514 37 100.0 37 ..................................... ATAAAAATTGAAAAAAAACAAAAAATAATTTAAAATA 3440 37 100.0 37 ..................................... GAATCTTCTGGTAATTATTCTGCATCTGGCTTAAATT 3366 37 100.0 36 ..................................... GGCTCAAAGCTTTGCACTCTATCGCTGTTGGAGTTC 3293 37 100.0 38 ..................................... AACATTCAACTTCAACACTGTCATAGCAAACTAAGCAA 3218 37 100.0 36 ..................................... TTTGTCCTCGGGCCCTGGGGGGTTCGGGGGGAAAGC 3145 37 100.0 38 ..................................... ACCGTTCCATAAGATCCTCCTAGTATTATCAATATTGG 3070 37 100.0 36 ..................................... TTGTGTCAATCGTGCCTATATTATAAATAAATTCCT 2997 37 100.0 37 ..................................... ATAATATTCTGTTGCTTTTTTGTTTGTGTTGATCTCA 2923 37 100.0 36 ..................................... TTGTACTATGGTTGATTTTACTTATTACGGTTATAT 2850 37 100.0 35 ..................................... GGGACTCCATGAAAATGATAGTCGCAGAAGCCTAT 2778 37 100.0 37 ..................................... TTAAGCATAATAGGTTTTAATGTCAATCCTGTTATAC 2704 37 100.0 38 ..................................... ATAATTTAGCTGAAGCGATAGCCAGCGTAGGAAGTCAA 2629 37 100.0 37 ..................................... GTTTGTAAAATGTTTTGAAGTGTAGCACGGAGTTTTT 2555 37 100.0 39 ..................................... GAAATTTTTCGGGGACATTTTTTCGCACGCGAGGGGTCA 2479 37 100.0 35 ..................................... CTGATGAAATGCCAGTATTTAATTTGACAGAAGTT 2407 37 100.0 37 ..................................... AAAGAACCCTGTTTTTCTGTTACATGTGTGAATCCCA 2333 37 100.0 37 ..................................... ATACGCTGGGATGAAGACAACAAACTAAGAGCAAAAC 2259 37 100.0 37 ..................................... CCCTTCATGTAACACACTTCTAAGAATTAAATATAGT 2185 37 100.0 35 ..................................... AATATAGTTTGTTATCATCTGACATTAATAATAAT 2113 37 100.0 40 ..................................... ACCTTAATGTTAAAATCAAAATTTTCTCTTAACGTTTTTG 2036 37 100.0 36 ..................................... AAGTCAAGTACCATAGGCATATTTTTATATCTATTT 1963 37 100.0 35 ..................................... TGCCTGTTTTAATGTTACCATTTCAAAACCTCCTT 1891 37 100.0 37 ..................................... TCATTACTCACACCTCCCATCAATGAATCTTTTTTCG 1817 37 100.0 39 ..................................... AATAATCATTAAAATTCATAATGAGATCCTCCTTAAATT 1741 37 100.0 37 ..................................... TACCGTCAAGTGTCCTAACAACTCTGTTTTTCTGGTA 1667 37 100.0 37 ..................................... AGGCTCGTCGTTTCGTTGTGTTTTTCGAAGATATCGA 1593 37 100.0 39 ..................................... CTGATACTTGTTGTTAGTGGGGTTGTAGTATATTTTATT 1517 37 100.0 37 ..................................... CTCACTATTCATTAAACAGCGACTTTCTCTTAAGAGA 1443 37 100.0 36 ..................................... TAGTAATGATGTAAAGCAATCAATAGGAGGTGAGTT 1370 37 100.0 37 ..................................... TCTATAATAATTATTTTTGCCCTCCAAATAATATATG 1296 37 100.0 37 ..................................... CCTGTGTAAATGACATTCTCTATTATAGAAGTAATTT 1222 37 100.0 39 ..................................... AAAATATTGATTTGGGGCAATTAAGCCCCAAATATTACT 1146 37 100.0 37 ..................................... TTTTGTTGGTAATTGCTGCTCATACCGTATCATCCCG 1072 37 100.0 35 ..................................... TCTTCCAGGCTCTTCTCAAGCTTTTCCCTTTCCTT 1000 37 100.0 40 ..................................... AACAGATTGCAAATATTGTAAACACGTTCATTGATGTATG 923 37 100.0 35 ..................................... GATTTTGCCATACGCATCATCTCCTTTTTGGTTCA 851 37 100.0 36 ..................................... ATGGAACAGAAGAAGAATAACCAGTAGGCCAATCAG 778 37 100.0 37 ..................................... ACCATAATAATTTATATTACACTCAACATTATAGAAC 704 37 100.0 35 ..................................... ACACCTTTGAAATCGAAAATGACATGAAAAAAATA 632 37 100.0 36 ..................................... AAAGCTGACTCCCAAATTTCAGAAACTAAGACTATA 559 37 100.0 39 ..................................... ACGTTAGGGTCGAAGGGCTCATAGTTGCCTTGGAAACCT 483 37 100.0 36 ..................................... TAGTATTTTGTGAAAATCATATTTGTAACGATTACT 410 37 100.0 35 ..................................... TTTTCGCAGCTCATTAATGCTAATGCAGTGCTTTG 338 37 100.0 37 ..................................... ACTCATTTGTCATCTTATTTATCCTCCTTTCTTTGTG 264 37 100.0 40 ..................................... ATTAGGGGGAGAGAAATAAAATTTCCCTATACTTATCATA 187 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 66 37 100.0 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : TAGTAGTTCTCGGAACTGGCTTTGGAGACAAGGTTAGCCTTGTGGTAATGGCAACGAAGGATGTTGTAGCAAAGGGCGTTCATGCAGGGAATATAATTAAAGAAGCTGCCAAGGTTGCCGGAGGCGGTGGCGGCGGACGTCCGGACATGGCACAGGCAGGAGGAAAGGACGTATCTAAGATTGACGAGGCTTTAAAACAGGCTGTCAAGGTAATAGAATCGCAAATTGCAGGTTAGTGTGTTGAAAGAATGGTTAATTTATGATATATTTTAGTTGTAGTTTGAGTTATTAGTGGTAAAATGTGGATGAAAAATTATTGAGAAATTTGAGTTGATAGGCTTGAAGACGTTGGGAATACTGGGTTGTATGCCTATGTTGGTAACTCAAAAATGTGTGATTTTTGATGAAAAAGGGGCATTTTTTGATGGGAAGTGAGCAAAAAAGTCTCGTCAAAAAATGCTCGTAAGGCTTGAAAGTTGCGGGATATGGCTTCGAATGCT # Right flank : CTTTATCCTTGATGAACTGTATATTTTATAATGCTCCCCATTGTCAAGACAATTTTTGCAGCTTTTTTAAGTTAGATTCTCCCTTCTTTGGTTTTGTATAATATTTACATCTATGCACTCTGTTGGATGATGTCAAGGGCGAGCGTAAGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 270-5911 **** Predicted by CRISPRDetect 2.4 *** >NZ_RLII01000026.1 Acetivibrio mesophilus strain N2K1 seq26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 270 29 100.0 38 ............................. TTGGGGTAATTGTTTTTTTCTTTTTGGATTTGTTGTGC 337 29 100.0 36 ............................. ACTGATATTCATAAGTCAATTTTGTACTTAGTTCGG 402 29 100.0 37 ............................. TAGAAGGGAATCTCTTCGAGTTGTTTACATAGTTCCA 468 29 100.0 35 ............................. AATTGAAACTTGATAGTTTGACTTTTGTATCTCCT 532 29 100.0 36 ............................. GAGGCAAGCTATAAATTATAAAATATATGTTAACAG 597 29 100.0 35 ............................. CTGTTTATCAAAAAAGGCATAGGGTGGGTAATGGG 661 29 100.0 35 ............................. ACAAAGAACTGAATCAATACGTCTGCGTCAACATA 725 29 100.0 36 ............................. ATCCGTATCGTCATACGGTTTCTGAGTCGGAAGAGG 790 29 100.0 36 ............................. TTTTCCGTATACGGTAAAAAAAATGTCTCATATTCC 855 29 100.0 35 ............................. AATAGCATGAGAGGCATAATAAAATTACGTATCGA 919 29 100.0 38 ............................. ATACCGCTGGGCGCTATCGGTAAACTCATAATACATAT 986 29 100.0 37 ............................. TCGGGGTGGCCTGAATATATTTTTATTTGCGCTCTAA 1052 29 100.0 36 ............................. CAATTCAATACTTATTTCACTATATTGATTATACTC 1117 29 100.0 37 ............................. CGTGGAGTTGAAGGCGAATCTATGGATAGCACAATTA 1183 29 100.0 36 ............................. TTTTCTTGTTGCACATACTACAGCAAGAAGGGAAAG 1248 29 100.0 35 ............................. GATGCAAACCATGATTCTTGTATGGTTCATATAAG 1312 29 100.0 37 ............................. ACGGTATTGGTTTAGTTGTAATATAGAGGATGGTATT 1378 29 100.0 36 ............................. AGCACAATTTTAATCAAACACATCATAATTTTCTAC 1443 29 100.0 36 ............................. TAAAATAAACAATCATAATGTCGTTATTTTAGCTGA 1508 29 100.0 37 ............................. CTTAATATTTAATTTGCGCGCAAACTCAATTTTCTTT 1574 29 100.0 36 ............................. TTAGGTTTATAAGCCCGCAACTCCCCATTGTGTATA 1639 29 100.0 36 ............................. TGTCGTAGGGCTTGGGAAACTTACGATTGAAACAGC 1704 29 100.0 35 ............................. ACAATATCAAATGAATTTATTGAGCAATGCGAAAA 1768 29 100.0 36 ............................. AGGCAGATGTGATCCGAATAGATCCAAAAGATTTTG 1833 29 100.0 38 ............................. GAATGAGCTTCCAAAAGTACAATGATATTAGCGCAGTG 1900 29 100.0 36 ............................. GCAAAAGTTTTTTGGTAAGCAAAAAAAGGATCTAGG 1965 29 100.0 36 ............................. GATGAATTGAAATTCCTTATGATAGACCCAAAGCAA 2030 29 100.0 36 ............................. GAACCTAATCCGGAACCTGACCCAATTCCAGAACCG 2095 29 100.0 35 ............................. TATAGAGGATTGGACGGATTGGAAAACCTTACGAG 2159 29 100.0 36 ............................. TAATATTCTGACGCGACGTGCCTTTGAGCGGTTTAA 2224 29 100.0 36 ............................. CCCTGATGATAAGATCCCGCCAATAGACGAAGCAAA 2289 29 100.0 35 ............................. TGTTAGACTTTTCGGAGGTGAAAAACGTGTTGAAC 2353 29 100.0 38 ............................. AAAAACAAGTTGCATGGGCAAATACACTCAGGCAACAA 2420 29 100.0 38 ............................. GTATTTATTCTACATCGGGTTTAAATTTTCGGATGGAC 2487 29 100.0 38 ............................. ATCAGTAAACAGCATGACAAACACAGTCAGCTCAGCGC 2554 29 100.0 35 ............................. TACTGAAACAAATATACTGACTTTCATGTAGTAGA 2618 29 100.0 37 ............................. GAGCAAAGGAAAGCAGAAGCTGAAACATTAGCAAAAC 2684 29 100.0 35 ............................. CCGCACAAACCACATTCTGTTGTTCCGTTGTCTTC 2748 29 100.0 35 ............................. TTGTGTATAGCACTGTAAATGCGGTCGCGCCCTAC 2812 29 100.0 38 ............................. TGATAAAAATAGTTTGAAACGTTTCAATCCTTATTTTC 2879 29 100.0 36 ............................. AAAGGATCATAGACATGACCGGATTTGTTGCAAATG 2944 29 100.0 36 ............................. GTTAGGATATCAAGCCTTACAGCAACTAGCACCATA 3009 29 100.0 36 ............................. ACTGTTACTGATTCTGTTTATTTGCATGAAATAAAT 3074 29 100.0 36 ............................. ATAAAAAAGGAGTGCCCCTGAGTGGAGTGCCGTCTA 3139 29 100.0 37 ............................. TAGTAAAGGTTATAAGCCTGTGAAGGGTTCTGTTTTG 3205 29 100.0 36 ............................. TCGGGGTGGCCTGAATATATTTTTATTTGCGCTCTA 3270 29 100.0 38 ............................. TTCAGGTTTTCTCCGTCTATTGTTACTTGGTTTATTCC 3337 29 100.0 36 ............................. GTTGGCTTAGGTTCTAATACATGCATAATCGAAATG 3402 29 100.0 37 ............................. AATAGAAGGGCAATATCTTTCGGCTATCGAGGATGAA 3468 29 100.0 36 ............................. AAGGTAGTCTATACAGTTGATGCTGCAGAAATATAT 3533 29 100.0 36 ............................. TGGTTTCCAAAGTAATAATATACTTGGTTCTGCTAA 3598 29 100.0 36 ............................. AAAGCAACATGGGGATTCAAAGGAGTTGTAACAGGC 3663 29 100.0 36 ............................. TAACAATGTTAAAAACTCGCTTCAAGGCATTGCAGG 3728 29 100.0 35 ............................. AGGTCGGGAAGAGTGCTCCGGGAGGATGATTCATA 3792 29 100.0 36 ............................. TCCCTGTTTTCTTTTGCTTCTTCTTCCGTCACACAC 3857 29 100.0 37 ............................. TCAAGCCCGTCCCAAATATCCCACCAAGCAGGTTCAT 3923 29 100.0 36 ............................. AGTAAAGTACGACATTCTACAACATCAAAGCATTGT 3988 29 100.0 37 ............................. TGCTACAAGCAAGAAGGGAAGAAAAAGTCAATGGTAC 4054 29 100.0 36 ............................. GAAAGAAGGGAGACTTATTGGCATATTATTGTAGAA 4119 29 100.0 36 ............................. TCATATAATCAACTTTAATATTATAAGTATCTTCAT 4184 29 100.0 36 ............................. GAGAATTGCGAACACAAGGAACCGGCGATAATAAAA 4249 29 100.0 37 ............................. GTTGAAACGTCCCGTCCGGATAACCTTTTACCCAGCC 4315 29 100.0 36 ............................. CCCGGACAAATTTGTTTCAAATGACGGGTTCGGGAT 4380 29 100.0 37 ............................. AGAAAAATTAAGTTGAACACTATTCCAGTTGAAATAT 4446 29 100.0 35 ............................. GGAAGAAGCTGAACCGGATCAATGAAATGGCTGGC 4510 29 100.0 36 ............................. CACAAATAGTTATCTCATGTCTACATTCTTTCTTTT 4575 29 100.0 37 ............................. GTTCCTTTTGATGTAGTGAAGAATAAATTTCCTTATG 4641 29 100.0 37 ............................. TTGCAGGAACTTACTATGTTGCCTTCGTATGGTGGGG 4707 29 100.0 38 ............................. AGAAAGAATTAAATTTAAAAACGTTTCAATCCTTTGTC 4774 29 100.0 35 ............................. ATAAAATAGCCCAATATTTCGGTGTGTCATTAGGT 4838 29 100.0 36 ............................. AAGTAGTCGGCAAATAGCTTGCAAACACTAACTGTA 4903 29 100.0 36 ............................. TTGTCTCGGGCTTCTCGGCTTCATCAATCATCTTTT 4968 29 100.0 36 ............................. ATCAATAATTTTGCCGAATCTGTCAGAGTACGAATC 5033 29 100.0 35 ............................. GCGCCAAAAGGGAAATGGCATGGGCTGTATATCGA 5097 29 100.0 38 ............................. TTAATGCAAGATTCAAGCTATTCGAGGAGCAAATCAAC 5164 29 100.0 36 ............................. TGACGTATAAAAATCATGCAGCCTATTTTCTTCAAT 5229 29 100.0 35 ............................. TGGTATTAGCATACACTTCAGACCGCTTTGACGAG 5293 29 100.0 37 ............................. ACTGGTAATGGTAGTTTATGCCTTCTTTTTTATTTTG 5359 29 100.0 35 ............................. ACCTTCTGATAAGGTAAGGAAAAAGACAGAAAACG 5423 29 100.0 37 ............................. GTGTGAAATTGATATTCGGGAAATACTGGAACGTATC 5489 29 100.0 36 ............................. TTAATAAGCCTATTTAAGCAGGTAATTGATGCGGTA 5554 29 100.0 36 ............................. TATTTCACTGAAAACAGTACGGGAACTGTAACAGGA 5619 29 100.0 37 ............................. TCCTGTGAATCCGGAAGTCCTTCGACTTCTCCGAATG 5685 29 100.0 36 ............................. GGGAAACATTGGACGCAAGAAGAGGTTGAATTTTTG 5750 29 100.0 37 ............................. TTACAAAGATATGATTATTTTCCTCTGGAGTTTTATT 5816 29 100.0 38 ............................. TTTTTGGCAGAGGACGATGTTCTTAAACTGCTACGAAG 5883 29 86.2 0 .................C..A.CA..... | ========== ====== ====== ====== ============================= ====================================== ================== 87 29 99.8 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : TATTGAAAATAATCTTATCATAATCTTGTGGGTGTGCTTTTCTAAGCATATTAGCAGGAGAAAGAGTGTTAAGTGGCCAAGCAAAACTGACTCTTTCTCTTTTTATATTATGATAATATACTTTTGGTATTTGGCAATAGAGCAGATGGTATTTTGATGTGTTTTTCAGCAGATTATTTTCTTGATTTATAGGTGAAAGGAATTTTAATTTGGCGTTTTAGCAATCTAACAGGGAAAAACAATTTGTCGCTCTACAGGTGGGACTCTCGG # Right flank : GACAGACTGCCCAAAGGAATGGTAACATGGACAGCCAGAGCCTAAACAGCTTCAACTTAATATACTGCTCACAAGGTATGCTAACGCCTTCGTAGCTCCTGCTGTGAAAAAGCTAAATGTCAAATCTCTCCCTTCTCCACAAAAACAGTAAAGGTACCATCCTCATTATTCACAACATCAAGTACTTTATGCCCCTCTTCCTTGAGGCTTCTTGGCACATTCAAAATAGGTTCTCCCTCATTCATCTTAATTTCAAGAATTTGCCCTTCCATAAGTTCCTCTATGGCAATTTTTGCCTTAACAAAAGTCATGGGGCAAACAACATCAGTGATATCTACAAAACCATTTGCTTTAAAATCGCTCATATCCATCCCTCCATTTCAAGCGGTTCTTGTATCCACATAAAATGCTCAATAATCACACCGCTTCCAACAATTCAACAAGCCTATCTTCTAACAAGCCCCAACCCACTCTGTCCAATGTATTTCCAAATCTTTCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 22603-17710 **** Predicted by CRISPRDetect 2.4 *** >NZ_RLII01000032.1 Acetivibrio mesophilus strain N2K1 seq32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 22602 37 100.0 37 ..................................... ATTCCTCTTTCCCTTGGAATTTCAATGCTTCCTCTTT 22528 37 100.0 35 ..................................... AGGGATACTGAATTTAGTTTTACCGACCTTTTAAA 22456 37 100.0 36 ..................................... TTGAATTTGAGTATTGGGAAGGCACGACCATAAGCG 22383 37 100.0 38 ..................................... AAACAAAACTCATATCATACACACCAGGAACTTCTTTA 22308 37 100.0 35 ..................................... TAGTATTTGTCATATCTTTAGTAAACAGCTTCTGA 22236 37 100.0 37 ..................................... AAGCTATATGGTCGGGGTTTTTTTCTTCTAGTTCACC 22162 37 100.0 36 ..................................... CTTCATAGAATTCCTTTTTATAGTCGCTGATTATTC 22089 37 100.0 36 ..................................... GATGCTGCACAGCACGAAAATACAAAAATAGATAAT 22016 37 100.0 36 ..................................... ACTAAGGTAAAGGAGGAAGAAAGAAAAAAGAGAACA 21943 37 100.0 35 ..................................... GCTCCCATATGTTTAGTTGGTATTTTTTCTATGCC 21871 37 100.0 36 ..................................... AAAAAGGTCATAAATGATTTTGACTATATTATTATA 21798 37 100.0 38 ..................................... CTTGGAAACAAACTATTGAACGCTGGATTCCCCATTTG 21723 37 100.0 35 ..................................... TTAAACTATCTTCTTTTGTTTTTTAAACCATATGC 21651 37 100.0 39 ..................................... CCCATATCCCAGTCAATATCGCATATTTATATGCAGCAA 21575 37 100.0 38 ..................................... ATATTACCATTTCTTACATAGCCATCTATGTGCCTTAG 21500 37 100.0 36 ..................................... TCAAAGTGGAACAGGAGATTATAAAATAATATCCAT 21427 37 100.0 38 ..................................... TATGTTATTGGTAGGATTACAATTTCATAACCGGTCTT 21352 37 100.0 36 ..................................... GGTTAAACTTATATTCTTTGGGTACCAAATCAATAA 21279 37 100.0 35 ..................................... TACGCCTCGTCAAGATGTGCGTATATGTCTGAGGT 21207 37 100.0 37 ..................................... ATGTAGTCTCCCATACAGCATTAGTAATCAATTCACT 21133 37 100.0 35 ..................................... CCTACTAGATTACCTGTTCCACTAAATACTACATA 21061 37 100.0 36 ..................................... AGCATATTCCTTGCTTATCTAATCCCCTTTCAATTG 20988 37 100.0 37 ..................................... ATGTTAGTGCAATCAGAACAGGTTATATTGATATAGC 20914 37 100.0 35 ..................................... CCTTAGTGGTATCTTCACCTGTAATTGTCCAATTA 20842 37 100.0 37 ..................................... TATTATTATATTCCATAACTTCTTTATAACTTGTATA 20768 37 100.0 36 ..................................... GCTACATAATTACCGTCAATCGCCTCCTTGTGAAGT 20695 37 100.0 36 ..................................... TCCTTTGCAGCATTTGCATTTTCAAGAGCTGTAATC 20622 37 100.0 36 ..................................... TTATATAAAGATAAGAATCTAAAGGAGGTAATTATT 20549 37 100.0 37 ..................................... CCAGCATACTTTATAATGCCACTATCACAAAAGTGAT 20475 37 100.0 36 ..................................... GCAGATCATTGTTCTCAAATTGACGCTGACGGTGCA 20402 37 100.0 36 ..................................... AAGTTCATATACGGTAATGTATCTGATACACTTTCC 20329 37 100.0 37 ..................................... ACCTGTCCAAGAAACGCGAAATGATGCTTAAGGGCGA 20255 37 100.0 36 ..................................... GTGAAATTGCAGCCAGAGCAATACTCCAACTTTGCA 20182 37 100.0 36 ..................................... CTTCATTGTATACGTATTCAAACAGTGAACGGGATA 20109 37 100.0 36 ..................................... TTCGCTTCTCTCCGGCTAGGTATCGTCTCTCTTGTC 20036 37 100.0 38 ..................................... AGGCATCAAGGCTCATGTATTGGCCCTCGTGCTGTAGA 19961 37 100.0 38 ..................................... AGGTTTAATGTATCCTATAATTTTACATTTAACATATA 19886 37 100.0 38 ..................................... GAGTCTCTTGTTTGGGACGGTGTTCCAAGGCTTGATAC 19811 37 100.0 36 ..................................... CTTTAAGCGGATGCCCTAACCGCTGTTATTACTGTA 19738 37 100.0 36 ..................................... AAGGATTTTCCAGCCTTAAAAATCCTATCCCATGCC 19665 37 100.0 36 ..................................... CCAACTAAGTGGTCATAGAGCTCCATTAAGAAGCTC 19592 37 100.0 39 ..................................... TACATTATATTCCCTCCTCTCTGAGGTCATCTAGTACCT 19516 37 100.0 38 ..................................... AAAAGCACAACAGCTTATTAGCCACATCGGCAAAACAG 19441 37 100.0 36 ..................................... AATATTGGGTGGTTGTCCGGTAAGTTATTGATATTT 19368 37 100.0 35 ..................................... TATTCAACTTCAGAATCCAAACTGAACATGAACTC 19296 37 100.0 35 ..................................... TAAAATCGCGATAAGGAGACATCTAAAATATGCAA 19224 37 100.0 37 ..................................... ATGTAACGCTGGAAGATGGGACAGTAACCACTATTTC 19150 37 100.0 38 ..................................... CTTACGAAAATTCCATAAGAGGAAAGGGGGGTAAGGGG 19075 37 100.0 35 ..................................... AACTTTTTAAACCCATCAAGAACACATTTTCAATA 19003 37 100.0 38 ..................................... CATATATAAGGTTTGAATACCTTCATTGGAAGTTCGTC 18928 37 100.0 35 ..................................... AAGTTAACAAGGTGCTAGTTATAGCACCGAAAAAG 18856 37 100.0 37 ..................................... CAAGAAGATAATTTTACAGGAAATCCTAAGAAATCTA 18782 37 100.0 37 ..................................... TATATTGCAGACGGTAGCTTATTTTATTCCTGTTGAC 18708 37 100.0 39 ..................................... CACAATTATTTTGACGAATAAAATATAGCTATTTAGAAG 18632 37 100.0 37 ..................................... TCCTCAACTTCACCCCCATCTGATTCTAGTACATACT 18558 37 100.0 36 ..................................... GTACAAAAACATCCAGTTTCATGGTCAGAAATATTA 18485 37 100.0 36 ..................................... GTACAAAAACATCCAGTTTCATGGTCAGAAATATTA 18412 37 100.0 38 ..................................... ACAAAGTATTAGGTATAAGCCCGCTCAATAGATTATAC 18337 37 100.0 38 ..................................... AACAAGTAGACATGATTATGGAAGCTCTGGGAGCAGAA 18262 37 100.0 37 ..................................... TTACTGGCTGTTCCACTGTTCTTTGTGTTTTAGCCTC 18188 37 100.0 37 ..................................... TAATTAAAGAATAAATTTGTATACATTTGAGATGAGA 18114 37 100.0 36 ..................................... TTCATTTTGACCTCCGTTTCATTGTTTTACATACGG 18041 37 100.0 35 ..................................... CTTGAAGCAGCAATGGCAGAAGCAAACTTTTTGGG 17969 37 100.0 37 ..................................... ATTGCTTTAATTCAGTCATATCTCTAATCCACTTCCA 17895 37 100.0 37 ..................................... CTATAGTCTATCTCCAAGTTCCTTCCTGTACGCTTGC 17821 37 100.0 37 ..................................... TAGTCTCGGCGCGTTGTGTGTTCTACAGAAATTGTTT 17747 37 89.2 0 ............T...................C..TA | G [17714] ========== ====== ====== ====== ===================================== ======================================= ================== 67 37 99.8 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : GGTTTTTCCTTTTCGATATTTGCCCAAGCTGCTGTATCGTGCTTTTCAATCGGTGTTGCCATGTTTTTCTGCTTATACTTGTTTTCTGCCATTTTATCACTCCAAACAATTAACTTACTTTATTATTGCTGTAATGATGTTATTTTATATCCTGACAGATATATTATACTGTTCATTATTAACAGATGATGCTTTTGGTGGAATTTGGTCGTGATTTATTGTCAATTGCCTGTAAGTGTGTTGAAAAAATAGTTAATTTATGATATATTTTATCTGTGATTAGAGTTGTGGGTGGAAAAATGTGGCTACAAAATTATTGCGAAATTTGCATTGGATAGCCTCTGACCTTTGAAAATGGCGGGTTACATGCCTATGTTGGTAACTCAAAAATGTGTGAATTTTAATAAAAAAGGGGCATTTTCTTATGAAAAGTGTGAAAAAAAGTTTCGTCAAAAAATGCCTGTAAGACTTGAAATTAGCTAGATGCAGCCTAAAATGCC # Right flank : ATGTCGTGAAAATGTCATATTAAAAAAAAGAAAGAGTCATATCGTAATCTGTTATTATGCCTATCTAAATCTCTCACTAAAGCCTTTAGGGGCATATACAGACTCCTACCATTATTACTACACCTATCTCCTGTATTTACCTAGCAAAAGCTCCTAGAGAACGTGACCATATTGAAGGACGTGGGCTCATGAATTTACTGCGGTTAAAAAAATTTAAGCTATTGATTAATTATTTTCATCGCTTTATAATTATAGTAGCTTTTATTACTTATGTAGTATGGCTTTATTAATTAAAATAAATGCACAGTTTTTAGGTTGTGTTGGTAGAACGGAGGAAAAAGAAAATGCCCATCACTGAATTTTTATCGCGTAATGCTGCGATGTACGGTCATGAAAAATGCCTGACAGAGATTAATCTCGATCTTCAGGAAAGCCATAATGTCATATGGCGTGAGTACGAACTCATCGAAAACAATCCAGCAGGGGAATACCGGAGAGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 92091-93163 **** Predicted by CRISPRDetect 2.4 *** >NZ_RLII01000012.1 Acetivibrio mesophilus strain N2K1 seq12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 92091 29 100.0 37 ............................. CTTTTTCATAACTATCGTACAGAGAACGAAGATTATC 92157 29 100.0 36 ............................. GATTGTATCATTGTTACAAATTTTGGCTATTGTCAT 92222 29 100.0 36 ............................. TTTCAAATGCTTACATAGCTAAGACGGGCATATCTC 92287 29 100.0 36 ............................. GGATTCAGATTCATTCATGACAGCTTGAGCGACAAC 92352 29 100.0 36 ............................. ACGTTATGATTTTAGAGCCTTTTCTGAATGGTTTGT 92417 29 100.0 36 ............................. GCGGTAATAGAGTTTTATATTCCAGAGGAATGTGTC 92482 29 100.0 37 ............................. TGAAATCTGAATTTGAGGTTGAAATTCTCAACAAATA 92548 29 100.0 37 ............................. GAAGATGAATGGGTATCAGGTATTAGCAGGGTTACTT 92614 29 100.0 35 ............................. AGTTTTACAATAAACCTTAGAGAACTTGCTGAAAG 92678 29 100.0 35 ............................. ACTTATTATGCTGGATATAGAACCTTCTGATATGT 92742 29 100.0 35 ............................. TCATCTAGCCATGCCTTTATTTTATGCTGTCGGAT 92806 29 100.0 36 ............................. GAAAATGATAAGAGCTGACATTAAACTCAACTATGC 92871 29 100.0 38 ............................. TTATCGTATCGAGGGTTATAGGCAGCTACTTGCTCACC 92938 29 100.0 38 ............................. CATATTTACTAATTTTTGGTGCAGTTTTGCTGATGGGC 93005 29 100.0 36 ............................. AAAAGGGAATCTCTTCGAGTTGTTTACATAGTTCCA 93070 29 100.0 36 ............................. GATAAGAACGAAAAAACAGGTGCTAGCGAGCGCGCA 93135 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 100.0 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : CAAGTATTTTATTGATGATGAAATATATAAACCCTTGAAGGCGTGGTGGTAAATATATTTGTCGTATTAACATATGATATTGAAGTAAAAAAAATCAACAAGGTACGGAAAATACTGAAGAAGTATTTGGTTTGGACACAAAATTCAGTGTTTGAAGGAGAAATCACAGAAGGTAAATTGCAAAAATGTATAGGACAAATTGGTAAGATTATTGACAAGAATGAAGATTCGATATATATCTATATTGTGGAAAATCCCAAGAATATTGTGAAGAATAAACTTGGAAAAGAAAAGGCACTAGACGAATTGATTTTATGAATTTGCAGCAAACCGATTAATTTAAGCAAGCTCTATAATGGCTTAAAAATAGGCATTAGAAGGATTTATGGGATAAACCGGAAAACACTATTGGAAGTTTACTGCAGTTTAATTATGTTTGAGAAAATCTCAACCCTCTGTATATAGCTTAAACAGAGGATTTTAGATTTCTGTCAAATTGG # Right flank : GATAAAAAAAGTAATTCCCACTGGTGGGTGTAGTTCAGCACTTTAAAATCGGAATAAAAAGCAAATTAAAATTCTCTTAATACCAGTGAAAACAGCAAAATAAAATTCTATACGCATAATACTACCGGAAAAAAAGCAATAAAAAGCAGGTCAATGACCTGCGAAATCAAAATTCTGGGTAGTCCAGTTCTTTGTATAAATGTAGTAACGCATATGCAACAGTAACGCCGTCAATAACACCGAGAACCGTAGTAAGCCTTTCTTTATTCCAAAAAATATCATTAAAATTTACCAAATGACAGCCGACGTTAAAATCCGGCATGCAGGCAAAATATCCTCTTGAGGTTTTGCCGAAAATAACCATGATACTTGAGCGGCTTTGGATCATAAATTCATAATGCGTACCATAGTCTTTAAAGTTTGATATTTTGCCGGGCCAGTACTTTTTTTGTGGTTACATATAAAAGTATTCATCGATTTTACCTAACCCCAAAGTTTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 140-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_RLII01000035.1 Acetivibrio mesophilus strain N2K1 seq35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 140 37 100.0 36 ..................................... CTATGTCGTCTGTGTTTTCGAGTTCAACGACATAAT 213 37 100.0 38 ..................................... GGAATTATGTGTTTCCCCCCTACTCTTTCTGAGGGGAA 288 37 100.0 36 ..................................... ATGTACCCTAGCCATCCGCATTCACCAGCCTAGTAT 361 35 81.1 0 ..................--......G....A.C.CG | A [389] ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 95.3 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : TCTTCCCTTAGGACCTCGATTACTATTTTTGCTTTTTCTTCAGGTGTAAAATGTCTTCTCTTTTCCATAGTTCCATTTTAACTTATTTTTGCTGTTTTGTCTGTCTTAATTTCTGGTATCATTATATTTTGTGCTATAAG # Right flank : GAAATAATTGCGAATATATTGCAAATACAACACAAACTACAATGTAAAACCAGTCAAAAAATGCTGCAAAACAACAAGTTTTGTCGAAAAAAGTTACAAATATTGACACCCCATATTATATAATATACAATGGTGATATAAAATTTTGCTGCTGTGAAAGAGGGTGACTGCTTGCTTGCAGGTGTATTGCAGTTGGGACAGTATGTAATCAATAACAGAGGCACTGACACTGAAGAGTATCTTCAAGTTATTGAGAACCCTAATGACAAAGGCAATTACAATCATGTCTTAAAGATTGCATTTGATTTTGCAAAAGATAATGTAACCTACCGTGGCATTGAGTATGAAGAATTTTCATTAGGGAAAATAAATAAGTACGCATATAAAAAGGGGAGTGCAAGAGGCGGTGATATAACACCTACGTCAAAGTATACAGATCCAATAAAAACTCTAAACAAGATAACGATATCATTTAATGATGTCTTAAAAACTACAAATCA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 16714-17926 **** Predicted by CRISPRDetect 2.4 *** >NZ_RLII01000035.1 Acetivibrio mesophilus strain N2K1 seq35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 16714 37 100.0 35 ..................................... AGGAGTTTGGTTTAACTCTTTTTTGCGGTGCTCAG 16786 37 100.0 38 ..................................... TAACATCCTTTTCTTCTTCATTTAAATCATTCCACCAG 16861 37 100.0 37 ..................................... TATCCGTGTCAAGTCCTGAAAGTTCTTGAACTGCCTG 16935 37 100.0 36 ..................................... AACAAAGAGTTAAGGAAGATAAAATCCGATATGATG 17008 37 100.0 37 ..................................... ATTATAAACCAAGGAACAGTAAATCTACTGTCCAAAG 17082 37 100.0 36 ..................................... CAGAAGTGAAAACCTCTATTGCAGACTTCTGGAATT 17155 37 100.0 38 ..................................... TTATATCCATCCAACAATCCTCCCCAAACTGTTGTCAT 17230 37 100.0 37 ..................................... ACCAAATCTTCAAATTCATCAATACTACCAACAAAGC 17304 37 100.0 36 ..................................... ACCGTTCAGCTTCAGCTTTTGCCTGGGGAGATCTTG 17377 37 100.0 36 ..................................... AAAATTAACTTTCAATTTTGGCAAAATAAAAAAATA 17450 37 100.0 37 ..................................... TTGATTCCAATATAACCAGGTATTCATCATCCTGAGG 17524 37 100.0 36 ..................................... GAATTGCCAATATTGCCTTTGTTTCGTCTCTTGTCA 17597 37 100.0 36 ..................................... TGAAAGGCGCAGATAGGGAGGATGAAGATTGATGTT 17670 37 100.0 36 ..................................... TGGGAATTGATTACTTTACGGGGCTTATTGTTGCTG 17743 37 100.0 36 ..................................... GGGTTAGCATAATACCCCTCCCAATGCTGATAATCC 17816 37 100.0 35 ..................................... ATGATGTGTTAGAACTTTCTGGACGTATTTTGCGA 17888 37 81.1 0 ..........A.A.....A.........AC.CT.... | AA [17908] ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 98.9 36 GTTGAAGAGGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : AACTGCCAATATCGGAGTATAACAAAGAGTTGGAAGTAAAATTGTGAATATTATTTAGTACGCTTATCACAAAACTATGAATTTATTGATAAGCAAAAATACAAGGAGTTCAAAAAACAGTTGAAGACTACATGAATTTGATGTGTTCTATATAAGGGATAAATAAAGAAGAACTGTTTGCTGAACGTGAGTTTGTAAAGATATAAACAGGAATTAATATGGACTGAAAGCAAATAAAGTATTGAAAATAGAACTTGATTATGATATGTTTTAATTGAGATTACAAGCAATATTTACAAAATGTGGATGAAGAATTATTGGGCGATCTGTATTAATGGCCTCTAAAGCATTGGAGATACAGGGGTGTAAGTCTATGTTGATAACGAAAAATTGCATAAAAAATGATAAAATTTCGATGTTTTTTGATGAAAGAAGTATAAAAAAGTTCAGTCAAAAAAGTCTTGTAAAGCTTGAAATTTGAGGGATATCATCTTCCGGAC # Right flank : CCTACCTCAATTCGACGCCCAAACTCGTTGATGAGGCATTGAAGAAGATAATAACTAACCTTACAAGGAGGTGCAAAATGAAGCTGATTCTAAACACACCCGGACTTTACCTTTGCAAAAGGGGAGAATGCTTTCAAATTCAGAGCGAGAATGAAAAACGAGAAATAGCCGCGGCCAAAGTCGACCAAATAATGATTACTACCCATGCTGCCCTTACAACTGATGCAATTGAGCTAGCCCTTGAATACAATATTGACATCATATTTCTAAAAAGCTCGGGACAGCCAATGGGGCGTGTATGGCACTCCAAACTTGGAAGCATCAGCACAATTAGAAGAAAGCAGTTATTCCTTCAGGATAGCCCATTTGGACTTCGACTTGTAAAAGAGTGGATTATTGAAAAGATGGACAATCAAATAAGATTGTTGAAAAAATTGGAAGTTAACCGCAGAGACGAAGAAAAACGTGCAATAATAAAAGATGCTTTGCAAAGGATTGAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //