Array 1 1-6926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCS02000005.1 Haliangium sp. UPWRP_2 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1 37 100.0 33 ..................................... CACACCCCACAGGAGGGGAGACCTATGGCCGAA 71 37 100.0 35 ..................................... GACCGCGCCCGGCTGGAAACGATGCTGCGCAATCT 143 37 100.0 33 ..................................... CGCCGCGATCGTGCGCGACAAGGCGACGCGACG 213 37 100.0 34 ..................................... ACGTGCCCCCCGAAACGCGGGACTACTACAAGTG 284 37 100.0 34 ..................................... GATCACGGTCTTAGGCTTGTCGCTGCCCCGAGTG 355 37 100.0 35 ..................................... GGCCCACGCATCGCTGACGCGATCTGGCTGTCACA 427 37 100.0 34 ..................................... AAGTGGTGGGCGGGAACGACGCCAACAACCGCGC 498 37 100.0 34 ..................................... GCTTCGGCCTGGGCAAGTTCATGGCGCTGCTGCA 569 37 100.0 34 ..................................... ACAGGAGATTAAGGACCAAACCGATAAGCTAGTT 640 37 100.0 34 ..................................... AGGCGCGTGGCGATTTATCCGCGAGCTTGGTAAT 711 37 100.0 34 ..................................... CGCAGTACGTTCAAATCCTCGGCAACGCTGCAGG 782 37 100.0 35 ..................................... ACTTGCCCGGTAGCGATGCCGCACGAGCTTTGTTG 854 37 100.0 32 ..................................... CCAAGCTTTCGAACTTCGGGACCGGCGACATC 923 37 100.0 36 ..................................... CCCCGGCTGCACGGGTGGCCGAGCGAGAGGGAGATC 996 37 100.0 34 ..................................... TGCGAGCGCTCGCTTGTGGGCATGACGATGGGGG 1067 37 100.0 33 ..................................... CGCCTCGCCGTCGTCGCGTCCAAGACGAGCGGA 1137 37 100.0 33 ..................................... CGAATTCTCGCTGAGAAAATTGATCCACACAGG 1207 37 100.0 34 ..................................... CGGCTTCTCTGCCTGACCGTCACCAACGATCCAA 1278 37 100.0 35 ..................................... GGCCTGTGCTCGACGATCGAGCAGTTCGACGTGAT 1350 37 100.0 32 ..................................... GCCGTCGCATGGCTGTATCAGTACGGCTGGCG 1419 37 100.0 35 ..................................... GTCAGCGTCACGAACGCTACCACCCTCGTCGTGCA 1491 37 100.0 35 ..................................... GAGTGTGCGCGGATGGTCGAGGCCGAAACCAAGGC 1563 37 100.0 36 ..................................... GTGCCGCCCATCGTGGTGCTTTGCGATGAGCGCGGA 1636 37 97.3 34 .......C............................. CTGCATCGAGCGCGCAGAGGTCTATCCCGACGAT 1707 37 97.3 34 .................A................... CCGGGAACCTTATCGCGCAGTTCATGGCGATATG 1778 36 91.9 35 .......T.T.........-................. GAGAATCGGCACCACCTGCCCGAGCTGCCCGAGCT 1849 37 100.0 34 ..................................... CTGGACAGGCAACGAGCCGACACCAGGCGTCTAC 1920 37 100.0 33 ..................................... CTCAACAAGCTGCCGCGCGTGGGGGTGTAGCGT 1990 37 97.3 34 ..........................G.......... GCGACGCCCTGCGCGTGGAACTGGCGGCGGCGAG 2061 37 94.6 32 .....................A...A........... ATGAACGCGATCTATAAGGGCGAGTTCGTCGA 2130 37 97.3 35 ..........................G.......... TTGCACATCAAGTGCCAGACAAATACCACCGTCAC 2202 37 100.0 34 ..................................... CTCGCTAGACACCCGCGGCACGGAGAGGGAGAGA 2273 37 97.3 34 ..T.................................. TCAACACCGACACGACCCGGGTAACTCCGACGGC 2344 36 94.6 34 .......................-.....A....... CATAGCAACCAACGGGCATTGGCCAATAACGCAA 2414 37 94.6 35 ........T............A............... CTACTCAAGGGGGAGTTGCTCCTCCTGCAGATGCA 2486 37 100.0 31 ..................................... GCAGCGCAACGAGGCAGAGAGGCGAGAGCAT 2554 37 100.0 35 ..................................... TCGCAGGGCGGCTCGCTTTCCACAACGACGAACAG 2626 37 100.0 35 ..................................... TTCCGCGATACGCTGGTGTCCGCCAATAGCGAGCT 2698 37 100.0 35 ..................................... GAGTGGCCCGGTAACGCGGCGCTGAACTTCAAGGT 2770 37 100.0 34 ..................................... CTGCTCTCCGCTGCGCTCCGCCTCAACCGCGCCG 2841 37 97.3 35 ........A............................ TCGCGATACCGCACTTTCGAGCTCGGGCGCGACGG 2913 37 100.0 33 ..................................... CACACCCCACAGGAGGGGAGACCTATGGCCGAA 2983 37 100.0 35 ..................................... GACCGCGCCCGGCTGGAAACGATGCTGCGCAATCT 3055 37 100.0 33 ..................................... CGCCGCGATCGTGCGCGACAAGGCGACGCGACG 3125 37 100.0 34 ..................................... ACGTGCCCCCCGAAACGCGGGACTACTACAAGTG 3196 37 100.0 34 ..................................... GATCACGGTCTTAGGCTTGTCGCTGCCCCGAGTG 3267 37 100.0 35 ..................................... GGCCCACGCATCGCTGACGCGATCTGGCTGTCACA 3339 37 100.0 34 ..................................... AAGTGGTGGGCGGGAACGACGCCAACAACCGCGC 3410 37 100.0 34 ..................................... GCTTCGGCCTGGGCAAGTTCATGGCGCTGCTGCA 3481 37 100.0 34 ..................................... ACAGGAGATTAAGGACCAAACCGATAAGCTAGTT 3552 37 100.0 34 ..................................... AGGCGCGTGGCGATTTATCCGCGAGCTTGGTAAT 3623 37 100.0 34 ..................................... CGCAGTACGTTCAAATCCTCGGCAACGCTGCAGG 3694 37 100.0 35 ..................................... ACTTGCCCGGTAGCGATGCCGCACGAGCTTTGTTG 3766 37 100.0 32 ..................................... CCAAGCTTTCGAACTTCGGGACCGGCGACATC 3835 37 100.0 36 ..................................... CCCCGGCTGCACGGGTGGCCGAGCGAGAGGGAGATC 3908 37 100.0 34 ..................................... TGCGAGCGCTCGCTTGTGGGCATGACGATGGGGG 3979 37 100.0 33 ..................................... CGCCTCGCCGTCGTCGCGTCCAAGACGAGCGGA 4049 37 100.0 33 ..................................... CGAATTCTCGCTGAGAAAATTGATCCACACAGG 4119 37 100.0 34 ..................................... CGGCTTCTCTGCCTGACCGTCACCAACGATCCAA 4190 37 100.0 35 ..................................... GGCCTGTGCTCGACGATCGAGCAGTTCGACGTGAT 4262 37 100.0 32 ..................................... GCCGTCGCATGGCTGTATCAGTACGGCTGGCG 4331 37 100.0 35 ..................................... GTCAGCGTCACGAACGCTACCACCCTCGTCGTGCA 4403 37 100.0 35 ..................................... GAGTGTGCGCGGATGGTCGAGGCCGAAACCAAGGC 4475 37 100.0 36 ..................................... GTGCCGCCCATCGTGGTGCTTTGCGATGAGCGCGGA 4548 37 97.3 34 .......C............................. CTGCATCGAGCGCGCAGAGGTCTATCCCGACGAT 4619 37 97.3 34 .................A................... CCGGGAACCTTATCGCGCAGTTCATGGCGATATG 4690 36 91.9 35 .......T.T.........-................. GAGAATCGGCACCACCTGCCCGAGCTGCCCGAGCT 4761 37 100.0 34 ..................................... CTGGACAGGCAACGAGCCGACACCAGGCGTCTAC 4832 37 100.0 33 ..................................... CTCAACAAGCTGCCGCGCGTGGGGGTGTAGCGT 4902 37 97.3 34 ..........................G.......... GCGACGCCCTGCGCGTGGAACTGGCGGCGGCGAG 4973 37 94.6 32 .....................A...A........... ATGAACGCGATCTATAAGGGCGAGTTCGTCGA 5042 37 97.3 35 ..........................G.......... TTGCACATCAAGTGCCAGACAAATACCACCGTCAC 5114 37 100.0 34 ..................................... CTCGCTAGACACCCGCGGCAAGGAGAGGGAGAGA 5185 37 97.3 34 ..T.................................. TCAACACCGACACGACCCGGGTAACTCCGACGGC 5256 36 94.6 34 .......................-.....A....... CATAGCAACCAACGGGCATTGGCCAATAACGCAA 5326 37 94.6 35 ........T............A............... CTACTCAAGGGGGAGTTGCTCCTCCTGCAGATGCA 5398 37 100.0 31 ..................................... GCAGCGCAACGAGGCAGAGAGGCGAGAGCAT 5466 37 100.0 35 ..................................... TCGTAGGGCGGCTCGCTTTCCACAACGACGAACAG 5538 37 100.0 35 ..................................... TTCCGCGATACGCTGGTGTCCGCCAATAGCGAGCT 5610 37 97.3 35 .......................A............. GAGTGGCCCGGTAACGCGGCGCTGAACTTCAAGGT 5682 37 97.3 38 ................................A.... ATGGGCTGACCACAATGCTCTGTCACAAGAGCACGAAG 5757 37 100.0 34 ..................................... GCTATGTGCTCAAACCGTCTGATCTGGATCTCGT 5828 37 97.3 35 .................A................... TAGACCACCAGTCAAACCGAAACGGCGCGGCGGCT 5900 37 100.0 34 ..................................... CAGAGTCCCCAGGCTGCGGGGCTGGCCCAGTCAC 5971 37 100.0 34 ..................................... AAGATCTTCGCGTCGTGCGCGCCGCGCTGGACAA 6042 37 94.6 34 ....................T.........C...... CACGACGCAAGCGAGCGATACCGCACAGGTCGGA 6113 37 94.6 33 ..T...........................C...... TTTTCGTGCGTCCATCATCGAGGAGTACAAAGC 6183 37 94.6 34 ..T...........................C...... ATGGGTTGACGTATGTTGGCGGAAAGTATGCCAA 6254 37 94.6 34 ..T...........................C...... GCGCACGCTGAGGGAGAGTTCTGAAAGGCCACAG 6325 37 94.6 33 ..T...........................C...... ATTGTTTTCAGGCCATTTGTTGTCAGTACGGAA 6395 37 94.6 32 ..T...........................C...... ACCCACGCCATGACTGACTTCGGATCCGAACT 6464 37 94.6 35 ..T...........................C...... TACAACAACCTGACGATCGCGGCCGGCTGCGACCT 6536 37 94.6 33 ..T...........................C...... TTTTTCGAATACTACGAAGGGGAGATCACTGGT 6606 37 94.6 34 ..T...........................C...... CCTCAGCCGGTCGCCAGATACTGAGTCTGATGTC 6677 37 94.6 34 ..T...........................C...... TTAATCAAGGATACACGCATTTAAAAATACCTTC 6748 37 94.6 34 ..T...........................C...... GGAAAAGTGGATCGTCGCGAACAGGCCCCGCAGC 6819 37 94.6 34 ..T...........................C...... AAGCTAGGGAGCTAGTCAGATGGCCGCTGCTACC 6890 37 94.6 0 ..T...........................C...... | ========== ====== ====== ====== ===================================== ====================================== ================== 98 37 98.4 34 GTCTCAAAGCCCATAAAGCGGGCGGGTCGGTTGCTAC # Left flank : | # Right flank : CGGTGCGGGGAGTTTCTCGTCGGGTGGTAGGGGCTGGTGCGCGAACCTTGCTGGGATGCGGGGGGCAGGCGCAGGAGTTGAGCGGAGTATGCCCCGCTGTGCGATGGGAGCGCCGGCAGCGCGAACCGGCGAGTAAGCGGCGCATCGGCGGGGGTACGCGCGGGGAGTGGGCGGCGCATGGCAGAGCGGGGAATTTGTCGAATAGGGAGTCGCGGCTCTATCTCGAATCAGAGCGGATCCATGCCGTCAAATGGGGTTGTCCGCTTGTCAGGCTATCCGCACGAGGTCTACCAGTTTAAGCGGACTCGCTGCCTGGGGGCTGCTGGAACTGCTGATAAAGCTGCATTAGGTCACGGCCTCGGCTGTAACCGCGATCGGCGATGAGGCGAATCGCTTCTATTAGGAGGGGCTGTTCCTCGTCGCTGAACTCTGCAAAAAGAGAGAGGATATCGCGGCGGTCATCGGAGCGTCGGGGGTCATCCATGGACACCAGCTTCATT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAAAGCCCATAAAGCGGGCGGGTCGGTTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //