Array 1 328168-327284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKU01000003.1 Klebsiella michiganensis strain M5al scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 328167 29 100.0 32 ............................. GTTCCAGTGATTCAGGATCTGGCCGATAGTTG 328106 29 100.0 32 ............................. CTTGGCGATCCTGTTCGTGAGGTATTCGGAAG 328045 29 100.0 32 ............................. ATTGACCAGGCTTCCGCTGACCGACTGTTGAA 327984 29 100.0 32 ............................. GCACTGACACACGAGGAGCTTTGCCAGTTAGC 327923 29 100.0 32 ............................. ACTCCCTTCTTGCCTGCTTCCACTGCTCTGAT 327862 29 100.0 32 ............................. TTATCTCAGGATATGAGTAGAACAGCAAAAAA 327801 29 100.0 32 ............................. GTTTGTTTCTGTCTCTTCGCGCATTCCTTAAG 327740 29 100.0 32 ............................. AACGGGCGCAGATATCCATAGGTCCACGTAGC 327679 29 96.6 32 .........A................... TTACTGGAGATCTGATGCACTTGCGTTCAAAT 327618 29 100.0 32 ............................. AAGATCAACCCGCGGATGAACACATTGATGCC 327557 29 100.0 33 ............................. GCCAGTGAACAGCCTGGCGCTGTGGCTGAATAA 327495 29 100.0 32 ............................. CCGGTACCGCGCACGTCAAATACTGAAGATGG 327434 29 100.0 32 ............................. CCTATGAAGTCAGCAACCTCGGACGGGTCCGC 327373 29 100.0 32 ............................. GCGGTGAACTCAGTTGCAAGTGGGCAGGGTGA 327312 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCAAACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACCCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : CAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGTTCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1018976-1017542 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWKU01000003.1 Klebsiella michiganensis strain M5al scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1018975 29 100.0 32 ............................. CAGCTGCGCATTGCTGGCGCCGGTCAGCGCGT 1018914 29 100.0 32 ............................. GGGCACGGTAGACGCGCCAGCAGGCAGCGCAG 1018853 29 100.0 32 ............................. TTGACTCCTGCGCCAGGTCGGGGCGCTGCCGT 1018792 29 100.0 32 ............................. TTACCGCAAACGCGGCGCATAGCTTGATCACG 1018731 29 100.0 32 ............................. CCGATCAAAGTCAAAACCGGGATCGTGATGCC 1018670 29 100.0 32 ............................. CATCGCCCCGAGCTTATCCCGGCATATCGTGA 1018609 29 100.0 32 ............................. CGACTGCTCGAGATTGCCGACGCGCTGGTCGT 1018548 29 100.0 32 ............................. GCACTGAGGACAGAGGCGTGTAGTGTCAGAAT 1018487 29 100.0 32 ............................. ACCATAGAACCAAAATCAACCTCAGGGTCAGC 1018426 29 100.0 32 ............................. ACAACGCACCGCGGCAGAACAGCGAAAAGTTA 1018365 29 100.0 32 ............................. ACCACGAATGAAAATGTGGCCAGGAAAGCCGA 1018304 29 100.0 33 ............................. GTTGGCCAGGCATACGCAGCAAATGCCATTGCG 1018242 29 100.0 32 ............................. ACTTGTTCAGAAAAAACCCCATTAGGAGGTTA 1018181 29 100.0 32 ............................. GGTGCTTGCCTGGGTAAAACTGAACAGGCTTA 1018120 29 100.0 32 ............................. ACCATTCTCATCATTCACGGCACGCAGTTAGT 1018059 29 100.0 32 ............................. CCGTTGATTTTTTCCGACGCTGGCTCAGTCTC 1017998 29 100.0 32 ............................. CGCTTCCGTTTCCTGAGCATATAGGTCGCCAT 1017937 29 100.0 32 ............................. CGACCGCCAGCGGCGTTGTTAAACACGCCTGG 1017876 29 100.0 32 ............................. GTGATTCCAGCGTTAACCCGCAACAGTTCATG 1017815 29 100.0 32 ............................. CCTATAACCGACGAAGGCAAGCGCCGCGCACG 1017754 29 100.0 32 ............................. CGATCCACTTTCTCACCGCAGAGCAAAAAGAA 1017693 29 100.0 32 ............................. CCTGCCGTTGACGTCAGACATCAGACACTAGC 1017632 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTCTGCGAAT 1017570 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTAAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //