Array 1 2720-3411 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEX01000001.1 Hallerella succinigenes strain UWS3 Ga0136295_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2720 37 100.0 36 ..................................... CCATAATCGTCTGTAAGTGCGAAGCAGTCAATGGCA 2793 37 100.0 37 ..................................... TGCGATTACCCGACGCAAAAACATAAGACGCTTGTTC 2867 37 100.0 36 ..................................... TCCACGCGGTGTGGGTACGTGAAGAGCGTTGCGTGG 2940 37 100.0 37 ..................................... AACTTGGACAAGTCGCGAGCCTTCTTGACCATATAGG 3014 37 94.6 34 ....A..............C................. TGCACAACCACGGAACCATCGTCGCAAGTCTTGG 3085 37 97.3 34 ....A................................ CCCTCTTAAGGGCTTCTGTCAGCTTCCGTTCGAT 3156 37 100.0 34 ..................................... TTGAGTCTTGAAAGGATAGCCTCCGTGATTTGCT 3227 37 100.0 38 ..................................... TCCCGAACCCACGCACTGAACGGCGTCATCGCTCGGTG 3302 37 100.0 36 ..................................... GCAAGTCTACGATTACTTCTGTAGTGACAACACTGA 3375 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.2 36 CTCCGAAAGCACTCCACGATATACAGTGGATTAAGAC # Left flank : GACTGGAACTTCGACGAACTCTTGCACGATTTACTCGCCATGGAATCCCAGGCAGCAACCACCAAGACAACAAGGTCTCGACTGAGTTCTCGCCAGAACAAGCGCATCTACTACTCCGGTTTTACGGGCACGGTAATCCTAAAGAACATTTCCGAAACAGCGAGAGTGCTCCTTTCGATAGGGGAAATGGTCGGAGTCGGCAAGAACACCACCTTTGGCGGCGGGCGATACGCGATTACCGTATAGAAAAAAGTTTACAGCTGATTTTTTGCGTTTTTTCGCGAAAAATGATGTATATTTAGGGTATTGGGGCCCAGACCCGCGAGTTTGAGCAGTATATTCTAAGCACCGGCAAAAACGCAATCAGGCTACTTCGTTGAATATCAACGAGTTAGAGAAAAATCCTTCGGAAAAAGTCGATTCGAAGGTAGTGCTCAAAAAGTCTGGCAGAAAAACGCCCTCTGGAACCCTTGATTTATAAGGCCTCGGCGATGCCACCC # Right flank : CTTTTAATTCTTCTCTATTGTTTATTGTTTTGAGCTCCAAAAGCACTCCACGATAAACCACGAACCCCATTTGCGTTTTTGCTGACAAATTTTAGGCTCCGCTTCGGCGGGGCCTTTTGTGTTTTGTACTACATATAAAAACGTATTTCTGTATACGATTTTGTATATACATCCATCAACGCATATAGTCCTAATTCTCCACCCTGCGATTTTTGCCTGAAAATCGCATTTTCCTTTTGGCACGGGTTTTGCAAATAGCTGTATGTCCGGGAAACTCCCGGACAAAACAACAACCCTCAACAAAGGAGAACAACCATGATTCCAATACTCCCCATCCTCGCCGGAATCGCATCCGCAACAACCATCATCAAAAACATCCGCGACATATAAAAAAGGAGGCCATCTATGGCAATCGCCTTCCTCGCCACAATCATCGGATTCCTCGTCATCGCCCACCAATCCTAACCCATCCCCTAACCCAAAGGAGGCTCGCCATGTCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAAAGCACTCCACGATATACAGTGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 7509-7905 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEX01000001.1 Hallerella succinigenes strain UWS3 Ga0136295_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7509 37 100.0 34 ..................................... TTCTGAAAGTTGTTTAAGTAGTCTTAACCTGTAT 7580 37 100.0 35 ..................................... CATACTTCACAGCAAAAGTATTGTACTTGTCTTTG 7652 37 100.0 37 ..................................... CCAAAAGCCTATAGTATGCCTTGTCCGTATTTCGTAC 7726 37 100.0 35 ..................................... TTTTTTGCTCATATGAGAAAGGATTTTGAGAGTCT 7798 37 100.0 34 ..................................... ATCTCTGCGAAGATCTCTGATAACGGAGTTTCTC 7869 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 100.0 35 CTCCGAAAGCACTCCACGATATACAGTGGATTAAGAC # Left flank : GGACAACAAACCCTTAACCAAGGAGAATCACTATGCTCCCACTACAACTCCTCATCACCAGCGTCACCACCATCTACAACATCGTCGAATACATCAACAGCAACAAATAACCCACCACACCCTAACCAAAAGAAACCTCGCTATATGCGAAACCGAACTCGAATTCCTCGCCAAATACTGCTAAACCCACAGCTTTCATATTTACCTCCTGAAAACAAATCCCCGGCGCCACGCGTATCGGGGATTTTTCGTTGTTTCGGGTGAAATTATGTGATTTTTCGCGAAAAATGATGTATATTTGGGGTATTAGGGCCCAGACCCGCGAGTTTGAGCAGTATATTCTAAGCACCGGCAAAAAGGCAATCAGGCTACTTCGTTGAATATCAACGAGTTATAAGAAAATCCTCCGAAAAAAAGTCGATTCGAAGGTAGTGCTCAAAAAGTCTGGCAGAAAAACGCCCTCTGGAACCCTTGATTTATAAGGCCCCGGCGATGCCACC # Right flank : CGGAACTAAACGTTCCTTAGCATCCCTCTTCGCCTCCGAAAGCATTCCACGATAAACCACGAACCCCATTTGCGTTTTTGCTGACAAATTTTAGGCTCCGCTTCGGCGGGGCCTTTTGTGTTTTTGTACTACATATAAAAATGTATTTCTGTATACGATTTTGTATATACATCCATCAACGCATATAGTCCTACTTCTCTACCCTGCGATTTTCGCTTAAAAAGCACATTTTCCTTTTGGCACGGGTTTTGCATATAGCTGTATGTCCGGGAAACTCCCTGGCAAAACAACAACCCTCAATAAAGGAGACTCACTATGATCCCATTACCACTCATCATCAGCGGCGTCACCACCATCTACAACATCGTCGAATACATCAACAGCAACAAATAACCCTCCATCCCTAACCCAAAGGAGGCCCGCCATGCCCATCATCCCCGAATACTCCGACACCGCCGTCATCGACTAACTGCCATCTAGCTAGTCGTCCCTTAAAATCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAAAGCACTCCACGATATACAGTGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 3122093-3122784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGEX01000001.1 Hallerella succinigenes strain UWS3 Ga0136295_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3122093 37 100.0 36 ..................................... CCATAATCGTCTGTAAGTGCGAAGCAGTCAATGGCA 3122166 37 100.0 37 ..................................... TGCGATTACCCGACGCAAAAACATAAGACGCTTGTTC 3122240 37 100.0 36 ..................................... TCCACGCGGTGTGGGTACGTGAAGAGCGTTGCGTGG 3122313 37 100.0 37 ..................................... AACTTGGACAAGTCGCGAGCCTTCTTGACCATATAGG 3122387 37 94.6 34 ....A..............C................. TGCACAACCACGGAACCATCGTCGCAAGTCTTGG 3122458 37 97.3 34 ....A................................ CCCTCTTAAGGGCTTCTGTCAGCTTCCGTTCGAT 3122529 37 100.0 34 ..................................... TTGAGTCTTGAAAGGATAGCCTCCGTGATTTGCT 3122600 37 100.0 38 ..................................... TCCCGAACCCACGCACTGAACGGCGTCATCGCTCGGTG 3122675 37 100.0 36 ..................................... GCAAGTCTACGATTACTTCTGTAGTGACAACACTGA 3122748 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.2 36 CTCCGAAAGCACTCCACGATATACAGTGGATTAAGAC # Left flank : GACTGGAACTTCGACGAACTCTTGCACGATTTACTCGCCATGGAATCCCAGGCAGCAACCACCAAGACAACAAGGTCTCGACTGAGTTCTCGCCAGAACAAGCGCATCTACTACTCCGGTTTTACGGGCACGGTAATCCTAAAGAACATTTCCGAAACAGCGAGAGTGCTCCTTTCGATAGGGGAAATGGTCGGAGTCGGCAAGAACACCACCTTTGGCGGCGGGCGATACGCGATTACCGTATAGAAAAAAGTTTACAGCTGATTTTTTGCGTTTTTTCGCGAAAAATGATGTATATTTAGGGTATTGGGGCCCAGACCCGCGAGTTTGAGCAGTATATTCTAAGCACCGGCAAAAACGCAATCAGGCTACTTCGTTGAATATCAACGAGTTAGAGAAAAATCCTTCGGAAAAAGTCGATTCGAAGGTAGTGCTCAAAAAGTCTGGCAGAAAAACGCCCTCTGGAACCCTTGATTTATAAGGCCTCGGCGATGCCACCC # Right flank : CTTTTAATTCTTCTCTATTGTTTATTGTTTTGAGCTCCAAAAGCACTCCACGATAAACCACGAACCCCATTTGCGTTTTTGCTGACAAATTTTAGGCTCCGCTTCGGCGGGGCCTTTTGTGTTTTGTACTACATATAAAAACGTATTTCTGTATACGATTTTGTATATACATCCATCAACGCATATAGTCCTAATTCTCCACCCTGCGATTTTTGCCTGAAAATCGCATTTTCCTTTTGGCACGGGTTTTGCAAATAGCTGTATGTCCGGGAAACTCCCGGACAAAACAACAACCCTCAACAAAGGAGAACAACCATGATTCCAATACTCCCCATCCTCGCCGGAATCGCATCCGCAACAACCATCATCAAAAACATCCGCGACATATAAAAAAGGAGGCCATCTATGGCAATCGCCTTCCTCGCCACAATCATCGGATTCCTCGTCATCGCCCACCAATCCTAACCCATCCCCTAACCCAAAGGAGGCTCGCCATGTCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAAAGCACTCCACGATATACAGTGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //