Array 1 27270-27453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIDX01000059.1 Geobacillus sp. PA-3 GEPA3_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 27270 37 100.0 37 ..................................... ACATCTAAGCGGTCGCAATTCTTCACAATAATAATCG 27344 37 100.0 36 ..................................... TATTCTTCCGCAGATAGACCCTCTGGAAGATTGAAG 27417 37 83.8 0 ...........G.............A......CT.CT | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 94.6 37 TGTTGAAAGAGAAAGGCCTCGTTTAGAGGATTGAAAC # Left flank : ATATTATTACGAGGGACAGTTCTCACTTTCCGCAGGGAACAGTAGAGGAATTGATGCATGAATTGCTTGAAAGCAAACGCCATTTGGCCGAAAATGTCATTATTCCGTTTAATATAAGCGAGATCCAGCAGGCAGTCGCTGAGAAAGTGGTGGAGCAAAGGCAGCTTGTGTAAAGAGCGAGCCACGTCGGTGGTTATATAGATGCTGTGCTGTCCCATTGTCTGTAATCGAACATGCCGCCTTCCCCGCCAATTCGGTTCGTTCCCGTGCATATGGCGCGGTGTACGGTCCAAAAACAGCCAAAAAACAGGGGAGGTGTGCATGGCGATTTTTCTTTCGTAAAACGAAACATGATCTTGATTTATCAATGGGTTGGATGGTTGACGTTTTTGGTCAGTCGTACAAGTTGACATAACCACATTTTATTTTTTGAGGGGGTGGAAGGGGTGTGCAAAATGGCCCCTTGCCGCCTTAGAAAATCAATGGTAAAATGAAGGAGC # Right flank : TCCCCCGCTTCCGTTCGCAGGAGGCGGGGGGGTGTTTTTTGGCTAAGAATTGAGGCAGGAAAACCGTTTGCCATGGCGAAATATTGGAAATACGATCTCTTGTTGGTGGATAAGAAGCGCCGCCGACAGGGTGGTGTGGGAGAGGGGGCGTGCTATGGCAAACGGTGGCAGGAGAACAAAAGGGGCAGTGAGCGCGAGGCTGGAGCGGGTCAAAGAGCTTTTTCCGGAAGTGGTGGCAGGCGAAGCGATCGATTGGGAGCGGTTGAAAAAAGAGCTTGGTTACGAAGAGCAAGACGAAGTGTACGGATTCACATGGCCGGGGAAGGCGGGAGCGAAGCAGTTGGCGGAAACGCCCGCCATCGGAGCGCTGCGGCCCGACCGAGCGGCAAGTAAGCGGTGGGAGACGACGAACAACTGGTATATTGAAGGGGACAATTTGGAAGCGCTCAAGCTGCTGCGAGCGTCACATGAAGGAAGCGTGCAAATGATTTACATTGACC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGAAAGAGAAAGGCCTCGTTTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 52251-54073 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIDX01000018.1 Geobacillus sp. PA-3 GEPA3_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 52251 30 100.0 39 .............................. AAAAAAAATAAAGACGGAATCCATCCGCCTTCATTTCCG 52320 30 100.0 35 .............................. CTAACGTAGCTATCACTGTTGTAACAACCATCGTC 52385 30 100.0 36 .............................. TATGGCGCAAGACACCGTTTTTTCTCGAGTGTCAGC 52451 30 100.0 37 .............................. CATTGGAGGGCATTCGTTCATTTAAAAACGGATTAAG 52518 30 100.0 35 .............................. TATCCGTTAGTAATTAGTAAATCTTTTACAATTCC 52583 30 100.0 36 .............................. AAACATATCGCAACTACAAACCAAATGGTGAACTCC 52649 30 100.0 35 .............................. ACATCGCTGATAAATGGGATTACCCAAGCTATACC 52714 30 100.0 38 .............................. CCTATACAACTACTATCACAGAAATTCCCGGGAACACC 52782 30 100.0 38 .............................. CCCTTCCGGCGTGGTTTGCTCACCGGCTTGGGCGCGGG 52850 30 100.0 37 .............................. CCAAGAATATGATTTTCCTTTGGTAGTCTTTGTCCTT 52917 30 100.0 39 .............................. TGCAAAGCGGCAGTTGACGCACGCTTCGCTAAAGTTATG 52986 30 100.0 35 .............................. CTAACGTAGCTATCACTGTTGTAACAACCATCGTC 53051 30 100.0 37 .............................. ATCTTTTCTTTCTCACGATCAAGTCCGTCACATCACA 53118 30 100.0 34 .............................. CCCTGTCGGAATGTATGTCAATTCCGGCAAGCTC 53182 30 100.0 37 .............................. TCTGCCATATCACATTGTCACCTACCTCCCATTTACC 53249 30 100.0 36 .............................. TGTAGATATGACATGTAAAAAATAAGCGGGAAAACC 53315 30 100.0 36 .............................. TCTTTGTATCTTGTGACGATATTGCACGAAACACTT 53381 30 100.0 36 .............................. TTCAACTACTAAACCCTTTTTATCACTGATCCAAGC 53447 30 100.0 38 .............................. ATCGTAACGGTTGTATTACGTTGTTGATTTCTATCTAA 53515 30 100.0 35 .............................. ATATATCACGTTTTAAATCTCTTGTCAATAGATTT 53580 30 100.0 37 .............................. AAATCAGAAAGCAAACATAAAAAATAATGAAAAGGAG 53647 30 100.0 38 .............................. TTTCTCTCCCGCGTCCGCTTTTTTCGTTGTCGCTTTCT 53715 30 100.0 36 .............................. ATCACGTCGCCAGCGTCATACTTGCCGCTGACGATG 53781 30 100.0 38 .............................. TCCCATCGGAAGTTTCAAAGGTTCGCTCTCGATGTACT 53849 30 100.0 35 .............................. AGCTATATTGTGCGAACGGTAGCCCAAAATATACA 53914 30 100.0 35 .............................. AAATACTACTTTCATTGTTCATTCTCCTTTCTTGG 53979 30 100.0 35 .............................. TTACGACGAGTACACATATGACCCGAACGCCGGGG 54044 30 93.3 0 .....................A..G..... | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.8 36 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : GGCCAAGAAGATGAAGCAGCGCCAAACAGCAGGCGGCCAAGAGGTGGCCCTCGGGCGGCTGTTGTTCGGATGTTTCGAGACATAGTTTGCGATTGTGTGAAGAAGAGGAGCTCCAATTGCGAAATGAGGTGAGCGAAATAATGAATAGAATGGATGGCCTCGTACGAACAGTGGGGAATGGTGAAAGAAAAGATACATATTGCGAAGCGAATGCTGACGCAAGAGATATAACGTGAAGGCGATTAGTGAACTGACCTGATTGTCGGTGGCAGTGGAGGGCAAACTAAAAAAGTAGAAGATCCATGTGGGGACACTAAGAAGCAAGATTCGTTTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTTGTGTTTGTCACTGGGTTCCTACAGCTATCACGAGCGAGCATGATTGACAGAATTTTTCGACCGTGTTATTCTGAAGGCAACAAGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGG # Right flank : CTTTATCGATTTTGGAGATGGAGCATATCATGTCATCATCAATTTATAAAACACTCTTGCTGTGGTTTTTTATTTTGCGAAAACATCAAATGAAACTTTCGTGGAGAGTGGAATGAAAGAAAGAATTTTATGTTAAAGGATGATGATGTATGAATAATAGAATACAACAATTCTGGAATGATTTTTGTAAGGCAACTGGTCAGGAGGGGATTGAATATAAAGATGCCTTTCAGTTTGGAGCTTTTCCTGATCGGTTGGCTGATTTAGTTGTTAAAGGAAAGAAAACAGCGACAACTTCAGGCTACGTGTTTTATGAGTTAGAAAAAGAACCTATCCCTAAAGCTGGTGAATATTATATTGTTTTGGATGGTCAGGGAGAGCCAGTCGCAGTCATTCAAATTCAATCCGTTGAAATTGTTCCGATGAATGAGGTGACAGAGGAATTTGCTTTAGCGGAAGGCGAAGGAGATTATCGTTCTTGGTGGGATGCACACGAAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1358-1586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIDX01000021.1 Geobacillus sp. PA-3 GEPA3_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1358 30 100.0 36 .............................. TTATTATCTCCAACATACGCCCCTTCTCCACCGTTG 1424 30 100.0 37 .............................. ATAATACGGTCGAAATCTCATTTTCGCGCAAATTGGG 1491 30 100.0 36 .............................. ACATCCGTACTTAAAATCGTATGCGAAGGGCGTTGC 1557 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : ACCAACAACGGGACTTGACGAGGCGAGGCAGCGGCGGTTGTTCGGACTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAGCGCCAATTACGAAACGAGGTGAACCAATGGAGACGAAGGAAGCGAAACAAGGAATGGAGTGGATCATCTCCGTACGAGCGGCAAGGAATCGAGAAAGAAAAGGTGGACACCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGTGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGAAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGAAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGG # Right flank : CCGATCGCTTTCATGATTGGTGTTATGTCAAGAAAACGGACACGTTAAACAGAGAGAAATAGCTGAATTTAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 81-1575 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIDX01000022.1 Geobacillus sp. PA-3 GEPA3_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 81 30 100.0 36 .............................. ACTCTATTCAGTCCACAAGGTGAAAAAATAGAAATC 147 30 100.0 40 .............................. AAAATCACGTTCAAGAAGGGAACAAAAGCATCGGTTATTA 217 30 100.0 36 .............................. ATTGTACATCGAAAGATAATACAAAAACAGAATTGA 283 30 100.0 38 .............................. GCAAAAGACTACAATACATATCTAACGCAGATTCAAAG 351 30 100.0 36 .............................. AAACGAGAAAAGGATACGACATGTGCTTCCTAACGG 417 30 100.0 36 .............................. CGTCTCGACCTTCAATTTTTTGCAGGAGACGGTGGA 483 30 100.0 35 .............................. CTGACCAAAAAGAAACAACTTTTCGAGCAAATGAA 548 30 100.0 35 .............................. TGAAGATGTAAAGGACGGGGTGAAGCAGGATGGCC 613 30 100.0 38 .............................. TTATTATTTGAGACTGCGGTTTTTCCGCAATCTAATTC 681 30 100.0 37 .............................. TGGGGGCTAGACGAATCGTCTATCAGAAAAAGAATAC 748 30 100.0 38 .............................. TTTATCGCACCGTTAGCGATCTTATCGGTAGTCACTGC 816 30 100.0 35 .............................. CGAACCCGGACGAGAATTTATACAGCGTGACCAAC 881 30 100.0 36 .............................. AAACGTGGGCTTGTCGATGTAAATATGCCGTTGCGA 947 30 100.0 38 .............................. CATTTTCTGTCACTAGTCCAACATCATCAGACAGCCAA 1015 30 100.0 34 .............................. GTTGCTTGATTGTTCATTGCGACATTACCTCCAT 1079 30 100.0 36 .............................. TAAATTGAGTGGATATCGTTCTGACTTCTTTTCGTA 1145 30 100.0 36 .............................. GCTTTTTCTATTTTTTCTCCTGTTTCGTATAGTACG 1211 30 100.0 37 .............................. CCTTGCGGCAAACGATAGTTTGCCGGCTATTATAGTT 1278 30 100.0 40 .............................. TGGCTCTAGCCGCAGTCAGTTTGTTGAATTTGTCGAGACG 1348 30 100.0 35 .............................. CCAGTTCTGTGTTGGAAAGCAGCGCCAAACTTGCC 1413 30 100.0 36 .............................. GGGAACTGATCGAATCTTTAGTTGAGTTTCAAAAGG 1479 30 96.7 37 .....................A........ ATCCGAGCCACACGAATTTCGATGTTATGGCCGGCTT 1546 30 93.3 0 ....T............A............ | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 99.6 37 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : ATTAAGTTTATTATAATCTCTCTGTTCTCCGTGTCCACTTTTTAGACTAACATCATGATTTCTTCATGAATCACATTTTGG # Right flank : CGATACTGTAAGAGTATACAGTTTATCGCCATGCCTTGATTGACGAAGTGGTGGCGGAAATCCATCGGTTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCCATATGTACACAAGTTCCAAAACCGGAAAGCATGGAACTGTTTAACGGCCATGGATGTCAATGAAATCAAAGAACATCTTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCGTGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATACATCGTTGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGTGACTTAGTCAAATTCCTTGAAAAAGAAACACAAAAATTTTACTATACGAAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //