Array 1 22773-25819 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMR01000014.1 Helicobacter cetorum isolate 138563_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 22773 37 100.0 40 ..................................... TTACTTCTTCTTCATACTCTTTCAGTATGCCCTTTTTTAT 22850 37 100.0 43 ..................................... AAAAAATCAGCAAAGCTTTTTGACGATAAGAAATTTTTAACAG 22930 37 100.0 37 ..................................... GCCAGATCGTAGTTATTAGTGACTGATAATTGCTTAT 23004 37 100.0 38 ..................................... ATATCACTATTAAAATTCTCTTCTCCAATTTCATCTAT 23079 37 100.0 41 ..................................... TGTAAATTATAAGGCTCAGTCATATTCAAATCTTGTATCAT 23157 37 100.0 41 ..................................... TGTGGTAGGAAGTTTGGGGAATGCCTTTAGCACCTATTTAA 23235 37 100.0 40 ..................................... TTGCTTTATTGCAATATTATCGGGTCCATTATTGCCGTTA 23312 37 100.0 48 ..................................... TAAAATCAAACCTAATAAACAAAATGAAATCATTTTATTAGAAAATAA 23397 37 100.0 37 ..................................... TAAAATGGGAAAAGTAGTAACTTTAGGTGATACTGAT 23471 37 100.0 37 ..................................... CCATCTGTCTAATACTTTTGGAAAAGCTCCTTCTAAA 23545 37 100.0 38 ..................................... TGCAGTTATTATGGTGAACTGGGCAGAAGGTTTTTCAG 23620 37 100.0 45 ..................................... GTCAAGCGATAGTGGTTCTAGTAATCCTAAAACAGTACCTACTGA 23702 37 100.0 40 ..................................... GAGATCAATAATACCCCTCTTAGTCAAATTACTTTTACTG 23779 37 100.0 38 ..................................... TCCCTATAGTCGAAGAAATACTCACGTGTTTCGGTTTT 23854 37 100.0 43 ..................................... TTGTTCTTTCTCGACAGCTGCCTCAAATGCAGCCGCTTGCCCG 23934 37 100.0 43 ..................................... TTATTCAGCTTCTGCTTCGTAATGAGAGCTCTGCTGCTCATTA 24014 37 100.0 37 ..................................... CAATAATATTCAAATTAATATCATAAACCACTATCGT 24088 37 100.0 37 ..................................... CTACGTATGAGAAAATTCATAGTAAGTTTATTTATGG 24162 37 100.0 36 ..................................... TTTAGAAAGCTTTACCGTATATTCAAACTCTATTTC 24235 37 100.0 41 ..................................... AATTTGCTCCCAGTCTACTTCATCTCTAGCAGCTGAAGTTT 24313 37 100.0 39 ..................................... TTAGTAGGAATATTATCTTTATCATAATACATAAAGTAT 24389 37 100.0 40 ..................................... AAGTAGAATGTGTCAAAATGAGAAACTTTGCTAAGACCAT 24466 37 100.0 41 ..................................... CTATTATTCCTTCTAATAACTTTATTAATAATAAAACTTCT 24544 37 100.0 41 ..................................... CTGCGTCTAACTTTCTTTTTAGCTCCTTTCCTCTCTCGTGG 24622 37 100.0 40 ..................................... TCATAAAGACGCTATTAAATCTGATAACAAGTATGTAAAC 24699 37 100.0 38 ..................................... TTTATAATTTAAAGAATTCTTCTTATATTCTTTAACAT 24774 37 100.0 39 ..................................... TGAGCGGAGAAATTGTTTTACGCCCTGACCCTAAAAAAA 24850 37 100.0 41 ..................................... TGTCTCAATCTTTTAAATTAAGACAATTAGTATTATTACTC 24928 37 100.0 40 ..................................... ACCTTAAAAACATAACTACTAAGTTCATCGCCGTCCTTTT 25005 37 100.0 45 ..................................... TTGTAGCTTAAATTGATTTTCAACAAATCCGTTAGTCTTTTTAGA 25087 37 100.0 44 ..................................... TGCTAGGCAATCATAGACTTTATCAAAATCTGACTCCATTGCCC 25168 37 100.0 41 ..................................... ATGTTTGTTAGGGACTTTACTGAAATAGCGTGTGGCTACAA 25246 37 100.0 38 ..................................... TTCCATAACCATAATGATTTTAAGCCTATCAGCAATAT 25321 37 100.0 37 ..................................... TCATAAGTAAGTGGGAATCCACCTCTAGTTAAACGAC 25395 37 100.0 36 ..................................... TACTCATAAAATACATTTTAATTTTGGGCATATTTT 25468 37 100.0 47 ..................................... TTGATGTTGAAATTAATAATTTCTTATATAATGAGATTTCAGAAATA 25552 37 100.0 38 ..................................... TAAAACATTCTAAGTTTTCTAGCATATATTTAACATTG 25627 37 100.0 44 ..................................... TTACTTGCAGCAAGTAACTGATGATTTATACGTAGATATTAGTA 25708 37 100.0 38 ..................................... ATATGGGGAATTAAATTTTGTAACGATCTTCATTTTAA 25783 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 40 37 100.0 40 ATTTATTACAGATTGACCCGTTTAAGGGGATTGAAAC # Left flank : AGAGCTTTGAAATAGGGGTTGAAAAAGGTATTTTTAAGACTTTTGATGATTTTATATAGAATGATTAAAGTTATCAAATAATATTTAAACATGCTCTAGGTTTTGCGAACTTTTTTTGCAAACTTTTTGAATAAAATTAGATAAAATGATAGTGATTTAATCTAAGATATTGTATTTTTTGGTTTTAAACCCATAGATTTGCGAATTTTTTGAATATTTAGGGTTTTGAAACCCTTTATTTTAGGGATTTCATAATCTTAAAATAAGCTTAAATTTCGCAAATCTCATTATTTTCTTGTTTTTATCTTTAAGATTTTAGCAAGATAGGGCTTAGAGATGCGTGTTTTAGGGGTTCTTTGAAAGTTTGTTGTTACTAGCTTACAAAGATTTTTGCCTAGAATTGAGGGATTTGCGAACTTTTTACTAAAAATTCGTATCTTAGGGAATTTTAAGGATTTTTTAAATAGAATTAGAAAGCCTTAAGTCTCGCAATTTAGGCT # Right flank : CAAAACAACTCTAATCCTTTATCAAGTGGAGAGGCATCATATTTATTACAGATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGGGGATTGAAACTTGCATATTAGTATCCCTTAAAAAAAATAGTTAGGAACATTTATTACAGATTGACCCGTTTAAGGGGATTGAAACTCCAGGTTAAAAATATCATTTAGCACTATGCTTTTAAAATTTATTACAGATTGACCCGTTTAAGGGGATTGAAACTTATCTAGATGATCATATAGATGAAGAACGTAACTAGAATATTTATTACAGATTGACCCGTTTAAGGGGATTGAAACAGTCAATACTGGTTCTGATAAGAATACTGGTTTATCATAAGTAAATTTATTACAGATTGACCCGTTTAAGGGGATTGAAACCTTTCACCAGTGATACGGAAATCATACTTACCAAAGTTAATTTATTACAGATTGACCCGTTTAAGGGGATTGAAACTTATCATCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATTACAGATTGACCCGTTTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //