Array 1 541659-543091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOR010000002.1 Escherichia coli strain FT105-1 NODE_2_length_667048_cov_37.324850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 541659 29 100.0 32 ............................. ATCCCGACGGGCAACGCGATACCCGGTTTATT 541720 29 100.0 33 ............................. ATTCCGGACGACGTGCTGGCGCGATTCCTCGGC 541782 29 100.0 32 ............................. ACGATTGGGCAGCCAGAGTTGCCGCCGGGAAA 541843 29 100.0 32 ............................. TCCGCGTGTCGCGCTGTCGCGCAGCCGGACGA 541904 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 541965 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 542026 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 542087 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 542148 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 542209 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 542270 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 542331 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 542392 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 542453 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 542514 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 542575 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 542636 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 542697 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 542758 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 542819 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 542880 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 542941 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 543002 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 543063 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 568794-569920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBOR010000002.1 Escherichia coli strain FT105-1 NODE_2_length_667048_cov_37.324850, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 568794 29 100.0 32 ............................. GATCCGGCGTCATGGGGTCGCCCCACAATACA 568855 29 96.6 32 ............................T GCTCCCACTCTATCGTTACGTGCTCACCGCAG 568916 29 100.0 33 ............................. TTTGCCTGGGCCGGTTCACCAAAAACCGCGCGC 568978 29 100.0 32 ............................. GCAACCGTCACAGCCTGCCCTGGCTTTACATA 569039 29 100.0 32 ............................. TCTCTTCACTTAAACTGGACGCAGTTTGTTCA 569100 29 100.0 32 ............................. CGAATATAGACCGGATACCCAACGTTTTTTAA 569161 29 100.0 32 ............................. CGGCGTGACACACATAGTCATTGTGTACGCTG 569222 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 569283 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 569344 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 569405 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 569466 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 569527 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 569588 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 569648 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 569709 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 569770 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 569831 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 569892 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //