Array 1 70398-71098 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCMC01000021.1 Klebsiella pneumoniae strain COL-Kpn23 contig_12_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70398 29 100.0 32 ............................. GCCTGGCCGAAAGTCAGCGCACGGGCAACACG 70459 29 100.0 32 ............................. CTCGAGTAATTCCGGCATAACGCGGGCCTTGC 70520 29 100.0 32 ............................. GCAAATTGCGGGTGCAGTTCGATGCTGGAATA 70581 29 100.0 32 ............................. AAAGCAACTTCTTTTGAGGATACATTCTCTTA 70642 29 100.0 32 ............................. ATTGAATACCAGGATGGCAAGCTGGTGGAGCT 70703 29 100.0 32 ............................. ATCTTTTCCTGTTTGGCATAAACACCCATTTG 70764 29 100.0 33 ............................. CAGGGCAGACCCGCGCGGCTGGGGGCAATACTT 70826 29 100.0 32 ............................. AATATTCTGCGTGAAATTGACGATATCAAAAA 70887 29 100.0 32 ............................. TTTTTCTGGCTGCGAGGAGTGAATAGCGCAAC 70948 29 96.6 32 ............T................ ACGATTATCCGGGCTGGGGAGTCAGTAAATGG 71009 29 100.0 32 ............................. AGATAGATAGGATGATCAAGGGAGTTTTGATC 71070 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1726 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCMC01000022.1 Klebsiella pneumoniae strain COL-Kpn23 contig_12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 ............................. GTGACGCGTGCGGACATGCGTCCCGACGACTG 111 29 100.0 32 ............................. TAATGCAACTCCGCAGCGCCTGGGAGGGGTTT 172 29 100.0 32 ............................. CACACGCTAGACTTTATCAGCGCGGCGGAAAA 233 29 100.0 32 ............................. GCATTTGGACTAACGTTAACTAACGCGGGCGC 294 29 100.0 32 ............................. GAACTGAGAACACGCGAACAGGCACGCCGCGA 355 29 100.0 32 ............................. AAGGTGCGTGCGGACGCCAGCGGGGTGGCGGT 416 29 100.0 32 ............................. GAGGCGGGTTTGATGATGAGCGGCGCCTATGG 477 29 100.0 32 ............................. TGCAACCACACCACGAAAATAGGGCAGTACGA 538 29 100.0 32 ............................. AGCGCCCCTTAAAGGTCCCGCCAGTCGTGCGC 599 29 100.0 32 ............................. GCTGAAATTCCATCTTTTTGGGAGTGCCTTTG 660 29 100.0 32 ............................. TAATGGAAATAGCAACTTTTATTGCGGCCGGT 721 29 100.0 32 ............................. ATCTGACGCTCTATCAGACATTTACTGACGAA 782 29 100.0 32 ............................. TACGCGTTTTATAGTTGCGGTCTGCTGGCGTC 843 29 100.0 32 ............................. GTTGCAGTGATATCACCATCGGCCGGGATTTC 904 29 100.0 32 ............................. TAAGCCATCAGCGATATCATGGGGCGGTGTCT 965 29 100.0 32 ............................. GATTTCAACGTCGGGAAGATGGCCGGGATTGT 1026 29 100.0 32 ............................. AGCTTTGCGGATGCTAACGACGACATCCTGAA 1087 29 100.0 32 ............................. CATTCGATTCGCTGGATATTGCAGGCAAACAA 1148 29 100.0 32 ............................. GACGGTGTGTTTGAGCTGGCGAGAAAGGGCAT 1209 29 100.0 32 ............................. AGGTTACGCAGCCACTGCGCCGCGAATGGGTC 1270 29 100.0 32 ............................. TGGATATATCCAACCTGCCCGTTCTGGTACGG 1331 29 100.0 32 ............................. ATCGCGGAGGTTTTTGGCGGCTGGGAAAACAT 1392 29 100.0 33 ............................. CCACTCGGCAGAATGGCTCCTGTAATGCTTTGC 1454 29 100.0 32 ............................. CCATCCTGAGAAATTTCACACTGGTAATACCG 1515 29 100.0 32 ............................. AAATTTGTTCCTCAGTTCCTACTTTTACGACT 1576 29 100.0 32 ............................. CTGCCCGACTGGGAGTGGTATCTCGCCCTGCC 1637 29 100.0 32 ............................. CGCGATATATGGCGTGCTGACCGGATGTAAAA 1698 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCATCAGTTTTTGACGGGTCAGATTTTGAGGGGG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCMC01000023.1 Klebsiella pneumoniae strain COL-Kpn23 contig_12_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. GTGACAACTATATCGGCAAGGTGACGTCGTTC 111 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 172 29 100.0 32 ............................. TTATTATATCTTCACGGTGAGGGAATGGTCCC 233 29 100.0 32 ............................. CGGCGGCTGTTCATCACATCTGGGGGCTGGCG 294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGGGGATAATCTCAGAGTGAAAGTCATTGTCACAG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCMC01000024.1 Klebsiella pneumoniae strain COL-Kpn23 contig_12_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57 29 100.0 32 ............................. CGGCCTCCTGATGGCGGGCGCGGCGCTTCTCC 118 29 100.0 32 ............................. GGGTTACAGATCTCTTCGGTGAGCATGGTTGC 179 29 100.0 32 ............................. GCCCGGCGCGCGGCGGTGCCACGGATCCATGA 240 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 301 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 359 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGGGCTGTCAACCAGCGCCCGGCGGACTGCTGCCG # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //