Array 1 153016-151522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDO010000001.1 Escherichia fergusonii strain EF33 NODE_1_length_228569_cov_386.617706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 153015 29 100.0 32 ............................. GTCTCTAGCGCAGATCGTGTTTATTGCCGGGA 152954 29 100.0 32 ............................. GGCGAATAAAATATCGTTTATTTTTATTTTCA 152893 29 100.0 32 ............................. ACGAAAACTGGTCTGAAAAATTCATCGAGCGC 152832 29 100.0 32 ............................. CGGGTCGAGAGATCCTCTCTGGTCACGAGCGC 152771 29 100.0 32 ............................. AGATAGCCATATTTCTGTAACGAATGGCATCA 152710 29 100.0 32 ............................. GCATAGGGAACAGGCCGTTCACCGTTTCGAAA 152649 29 100.0 32 ............................. TATTCAGGCATCCATCACTCATGATGTTATTA 152588 29 100.0 33 ............................. GTTTAACCGAGAAATACATCATGTTTAGCCGAG 152526 29 100.0 32 ............................. TGCTGGATTAGGGTTAGCTTAAAATTCAGTTC 152465 29 100.0 32 ............................. TTTATCAGCGTCACCGATCCTACTTGTGCGGA 152404 29 100.0 32 ............................. GCATTTACCGTGCGATATATGTCGCAAAGTTT 152343 29 100.0 32 ............................. GGGATGTACGGAAGTAAGTTAAATGGTTATCG 152282 29 100.0 32 ............................. GCTTCCTCCACCGGAAGAAGTCCGCCATCTCA 152221 29 100.0 32 ............................. ACCGGAGTGATAGACCGTTTGCTCGATGCCGT 152160 29 100.0 32 ............................. AGTTAAAAAAATCCACTGCATATAATGAGATC 152099 29 100.0 32 ............................. TTGATGCAGTGTGTCAGGGGCTTAACTTTTGC 152038 29 100.0 32 ............................. ACCAGCATAAATTTGGCTATGCCATTGTACGT 151977 29 100.0 32 ............................. ATTTCTTTGTCATTCGGTTTTAAACCGTTTAA 151916 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 151855 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 151794 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 151733 29 100.0 32 ............................. CCTGACCAGATGAGAGACTTTAACCCGGAACT 151672 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 151611 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 151550 28 79.3 0 .A..........T.........-.CT..C | C [151541] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : AGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTACCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 168921-168343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDO010000001.1 Escherichia fergusonii strain EF33 NODE_1_length_228569_cov_386.617706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168920 29 100.0 32 ............................. TCTGCGGAGTATGAGATCGCGCTCCTCGGATA 168859 29 96.6 32 ................T............ TGGCCGAAGCGCATGAGCGTGGAGGTGCAGGC 168798 29 100.0 32 ............................. ATCCATATTCGCGCGCTGGGTAGCGACGATAA 168737 29 100.0 32 ............................. CCGGTTGTAATTCGCCATTTACTGGGCGTTTT 168676 29 100.0 32 ............................. CGTAACGATAAAAACGTCACTCTTACGCAATT 168615 29 100.0 32 ............................. GTGCCGCTCGTATCGTGAGCGTTGTACGGTGT 168554 29 100.0 32 ............................. CAATATCCCGCACCCGGAACACTGGTTGAATT 168493 29 96.6 32 .........G................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 168432 29 89.7 32 .........G......T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 168371 29 72.4 0 ........AG.T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 GAGTTCCCCACGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //