Array 1 90446-89136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIJYS010000003.1 Escherichia sp. NIC24-2-1 NODE_3_length_201533_cov_202.795370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90445 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 90384 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 90323 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 90262 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 90201 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 90140 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 90079 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 90018 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 89957 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 89896 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 89835 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 89774 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 89713 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 89652 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 89591 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 89530 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 89469 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89408 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89347 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 89286 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89225 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89164 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117348-115995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIJYS010000003.1 Escherichia sp. NIC24-2-1 NODE_3_length_201533_cov_202.795370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117347 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 117286 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 117225 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 117164 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 117103 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 117042 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 116981 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 116920 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 116859 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 116798 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 116737 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [116711] Deletion [116697] 116695 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 116634 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 116573 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 116512 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 116451 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 116390 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 116329 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 116268 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 116207 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 116145 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 116084 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 116023 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //