Array 1 66061-63956 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRZ01000018.1 Escherichia fergusonii strain MOD1-EC6349 MOD1-EC6349_18_length_86452_cov_46.7984, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66060 29 100.0 32 ............................. TCGCCCGAAAAACAGCTTGAATCTTATATCGC 65999 29 100.0 32 ............................. AACGCGCCAACGTTCATTGGGGAAGTGGTATC 65938 29 100.0 33 ............................. GACGGGAAAAAGCTCCCGATCACCATTCCACAG 65876 29 100.0 32 ............................. ACTACCTCAACGGGTGCGTTTGCCAGCATAAA 65815 29 100.0 32 ............................. GCAACAATAATTACTCACGCGTTTGAGCAATG 65754 29 100.0 32 ............................. TTGTATGGCGACATGATTGTAGGCTCAGCACT 65693 29 100.0 32 ............................. CCTGTCACTGACACGCAGTGGCGCTACCGTGA 65632 29 100.0 32 ............................. GAATAATTCGGCACGAAGATTTAAATAGTTAA 65571 29 100.0 32 ............................. GGTTGCTTTGCGTGATTTCGCTATATATTCGC 65510 29 100.0 32 ............................. GCATAGGGAACAGGCCGTTCACCGTTTCGAAA 65449 29 100.0 32 ............................. TATTCAGGCATCCATCACTCATGATGTTATTA 65388 29 100.0 32 ............................. CCTGATCTTCTTCTTCGTCTGTGCAAGCGATG 65327 29 100.0 33 ............................. GTTTAACCGAGAAATACATCATGTTTAGCCGAG 65265 29 100.0 32 ............................. TGCTGGATTAGGGTTAGCTTAAAATTCAGTTC 65204 29 100.0 32 ............................. TTTATCAGCGTCACCGATCCTACTTGTGCGGA 65143 29 100.0 32 ............................. GCATTTACCGTGCGATATATGTCGCAAAGTTT 65082 29 100.0 32 ............................. CCTGAACCAACTACTAATGACAATCGTAACGC 65021 29 100.0 32 ............................. AGATCAATCTGGTTAGGTCACGTTTGTATTGA 64960 29 100.0 32 ............................. TTCGTCGATTCTCAAATACCCGTCGAAAATAT 64899 29 100.0 32 ............................. ACCCGTCTGTCTCTTCCTGAACTTTGATGAGG 64838 29 100.0 32 ............................. TGATCACATCTGGTGCTCGCGTCTATGAGTGG 64777 29 100.0 32 ............................. GTAAAAAAATCAGCGACATGACGAATGTCATG 64716 29 100.0 32 ............................. GGGATGTACGGAAGTAAGTTAAATGGTTATCG 64655 29 100.0 32 ............................. GCTTCCTCCACCGGAAGAAGTCCGCCATCTCA 64594 29 100.0 32 ............................. ACCGAATAAAAACTTTTTACGTAGGTTCCTGA 64533 29 100.0 32 ............................. ACCGGAGTGATAGACCGTTTGCTCGATGCCGT 64472 29 100.0 32 ............................. AGTTAAAAAAATCCACTGCATATAATGAGATC 64411 29 96.6 32 ...........................T. CGTTTCATTTGCTGTAGAGACGGTTCTTGAGT 64350 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 64289 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 64228 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 64167 29 100.0 32 ............................. CCTGACCAGATGAGAGACTTTAACCCGGAACT 64106 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 64045 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 63984 28 82.8 0 .A....................-.CT..C | C [63975] ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81598-81020 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRZ01000018.1 Escherichia fergusonii strain MOD1-EC6349 MOD1-EC6349_18_length_86452_cov_46.7984, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81597 29 100.0 32 ............................. GACTAGATTGGCTCCAACGATGGGCGTTTTAT 81536 29 100.0 32 ............................. CACGAGCTGCGGCGCGCTCGGCGGCGGCCACT 81475 29 100.0 32 ............................. TGGCCGAAGCGCATGAGCGTGGAGGTGCAGGC 81414 29 100.0 32 ............................. ATCCATATTCGCGCGCTGGGTAGCGACGATAA 81353 29 100.0 32 ............................. ATCAAAGACGCTCGGGTGTCGTTGATGTATTA 81292 29 100.0 32 ............................. CGTAACGATAAAAACGTCACTCTTACGCAATT 81231 29 100.0 32 ............................. CAATATCCCGCACCCGGAACACTGGTTGAATT 81170 29 96.6 32 .........G................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 81109 29 89.7 32 .........G......T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 81048 29 72.4 0 ........AG.T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GAGTTCCCCACGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGCATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //