Array 1 166454-166306 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU349849.1 Escherichia coli strain TA159 / Oneg:H31 / fimH31 / 3592 (ST Warwick) isolate Faeces chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 166453 28 100.0 32 ............................ GCTGTATTCGGCAAATGAAGTGGATGTTGATG 166393 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 166333 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTTGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTTCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGTAAGGTAAGGATAAAAAAAGGGTGGTAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGT # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACTTATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3503742-3502430 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU349849.1 Escherichia coli strain TA159 / Oneg:H31 / fimH31 / 3592 (ST Warwick) isolate Faeces chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3503741 29 100.0 32 ............................. AGTTATAAACGCGGTATTCTTGCTGAATTCCC 3503680 29 100.0 32 ............................. GTAAACGAATACGCAACGGTGTTTTTATTGAC 3503619 29 100.0 32 ............................. AAAGCCGACTTCAGGCGACGGTAAAAGACCGC 3503558 29 100.0 32 ............................. TTATCAGACGTGTCCCCCGTTAAAGTTTTGGC 3503497 29 100.0 32 ............................. TTCAGGGCGCAGATACCATGTTTATTGCGCAC 3503436 29 100.0 33 ............................. GGCAAGGCGAGTTATCGCGAAATCGCAGCCCGC 3503374 29 100.0 32 ............................. ATATTAAATCCGAAACAGCATTAAATAACAGG 3503313 29 100.0 32 ............................. CTGATATTGTTATCGAGGCGATATTGACTGCG 3503252 29 100.0 32 ............................. GCAGCACCACCCTGACTTTACGGCTAAACGGA 3503191 29 100.0 32 ............................. CGGGATTTGGATTTAGTAACGAGACTGTTATG 3503130 29 100.0 32 ............................. GTTTTAACTGTTTGGGTTACTGGCATCTTTGT 3503069 29 100.0 32 ............................. CCGCACCAGTGCCGAAATGCAATGCTGATTTG 3503008 29 100.0 32 ............................. TTCGGCAAGAACAGAAACGTCCGGTGCAGCAA 3502947 29 100.0 32 ............................. TACCCAAAAACGGGAGTATTTAGAGGAAGCGA 3502886 29 100.0 32 ............................. AAAACAAATGAGATTTTATCCGTGCTTGTTCC 3502825 29 100.0 32 ............................. CGCCCAATGTTTTTATTGAGACGCTCCCGGAT 3502764 29 100.0 32 ............................. CGGAAATTTGTGTCAGATATTGCCGGGAACAT 3502703 29 100.0 33 ............................. ATATGGCCGGTTGGCGCAATATTGATACTTTGC 3502641 29 100.0 32 ............................. ACGAATTCATTTCTGCCCGCAAAAAAGAGGAC 3502580 29 96.6 32 ............G................ CTATTGCCGATCGCTTTGTATCGCGCCCCGTC 3502519 29 100.0 32 ............................. GCCCAGGGATTTGTTCAATCCAGCGTGCCGCT 3502458 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGGATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3529829-3529373 **** Predicted by CRISPRDetect 2.4 *** >NZ_OU349849.1 Escherichia coli strain TA159 / Oneg:H31 / fimH31 / 3592 (ST Warwick) isolate Faeces chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3529828 29 100.0 32 ............................. ATCTGGACGCATGGGGGAAAGCTGCGGAACGC 3529767 29 100.0 32 ............................. ACGCTGATTATTCCGTACCAGTATTGTGAGGC 3529706 29 100.0 32 ............................. CTCGTCGCCAATCGCCAGTCAGACATCAAACA 3529645 29 100.0 32 ............................. CGATCGGCAACAGCATGGCGGTGCCGGTAATG 3529584 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 3529523 29 96.6 32 ............T................ TTTACCTGCTCGGTGATATCGTCCTGCAAATC 3529462 29 96.6 32 ............G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 3529401 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCTGGGTGTCAAACACACAGTCTTGCAGATGGATCTGGAAAGCTTTCGGTGTAGAAGTCCCGTTGTTTTTCAGGATCCCTGAACCAATGTCACCCATATCAACTTCCAGTTTGTGATCATCAGGAACGATGGAGCACGGGGAATCTTCAATGGTGCCGTAAAAACGAGCTGTGCCGTTGTTGCCAGCGGCGATTGTTGAAGTAGAAGCGAACGCACCCATTACCATTGTTGCAGCAATAGCTGTTTTTACAAACTTACTCATTATTTGTCCTTAAACCATAAATAATTAAAAATATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTGCTTAAGTATAACAGTGTATTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //