Array 1 2952-1183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUS01000043.1 Geobacillus sp. CAMR5420 Contig43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 2951 30 100.0 35 .............................. AAAGCTGACTATTTCATTTCCATCCACATCAACGC 2886 30 100.0 36 .............................. AAACGAAGGCCGTTCTTCCGTGATCCGCTCGAGAAC 2820 30 100.0 36 .............................. CTGCTCTTCTCAATAATTCACTTGCGGCACTCATCA 2754 30 100.0 36 .............................. TATAACAGGAATCATTGCTTCTTTTCCGAAATACCC 2688 30 100.0 36 .............................. ATTTTTCGGAAGGCATGATACGCCGCGGGTATGCGG 2622 30 100.0 37 .............................. TAATGTTTCGAAGGTGCGTTGGGGAAGTTCTGAAATT 2555 30 100.0 35 .............................. CATTTGCCAGGCAAAAGCAGCGCTCACTGTCACCA 2490 30 100.0 37 .............................. AGGCGGTAATCGCAAGCCCGATCGGACCAGTCATCGC 2423 30 100.0 37 .............................. CGAAAAAATACCAAGAAATGTTATTTGCTGAGGATCA 2356 30 100.0 38 .............................. CAGCAAAATCAAGCAGCTTGAACGAGACATCGAGCGGC 2288 30 100.0 34 .............................. CAGCTTATGTGCGGCGTTAGGAATCGCGGCGGAG 2224 30 100.0 36 .............................. TTCCTTTTTTCCCGTAAAACCTGTTGCCGCTTTTTC 2158 30 100.0 35 .............................. TGTTTCCGAGTGCATTATGGATTGGTGCCAAACCC 2093 30 100.0 34 .............................. TCAAGTCAATACGTCACGATTGTGGTGGATGATC 2029 30 100.0 39 .............................. AAAAATGTTTTTTGCCATATCAATCGCCAACTTCATTGA 1960 30 100.0 35 .............................. GACGACGAGTTCCGCAAACGAGATGTGGAACTTGT 1895 30 100.0 35 .............................. GACGACGAGTTCCGCAAACGAGATGTGGAACTTGT 1830 30 100.0 35 .............................. GCAATATCGCTAGCATTGAAGTCACCTTCTCCGAC 1765 30 100.0 35 .............................. ATTGCTGCCCAACAAGCACGAACCGGTTGCCATTC 1700 30 100.0 38 .............................. GTAACAGTTTCGCCGTTTTCTCCGGCAAGTCGGCTTCC 1632 30 100.0 35 .............................. CAACAAATCGCCTACGGTCACGTCATCGGTCTTGA 1567 30 100.0 39 .............................. CCTAATGTCCGATAACAGCCTACCAATCCCAATCCGTCA 1498 30 100.0 38 .............................. ACGACGATCATTCAGGATTTGAAGCAAACCGCAAAAGA 1430 30 100.0 121 .............................. AGTTGTGAATATGCGTCAAGGCCATTCCTGTGCATGGAGTGAATCCTTTGACACATAGTACGATGACTGGCTTTTCATAGAAGAAGAAACAAGAATGCTTCTTCTTTACGCCAAAATAAAG 1279 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 1212 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 26 30 99.5 40 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CAACCCGTCCCTTTCCGACGATATCGTCCGCGTCGCCCGTTCGCCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCGACGCAATACTGCACACTATTTGGCAACGTTCCTGCTGGTCTCGCCAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCTCTGCAACAAACGATCGCACACCACGGAATCGAAGGAGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCCGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGTCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGG # Right flank : GCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 902-336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUS01000070.1 Geobacillus sp. CAMR5420 Contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 901 30 100.0 38 .............................. ACGGAACGCCGGTCAGCCGGAATGAAACCGATTTATTC 833 30 100.0 36 .............................. TTGGCCACGACACGTTAGACCCTAAACGTAAGATTG 767 30 100.0 37 .............................. GCCAAGAAACACAATTGGCAATCGCAGCTCGGGCAGC 700 30 100.0 35 .............................. TCAACCCCACAGTCTGTCTAAAAAGTCATCGGTCG 635 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 570 30 100.0 39 .............................. GCTACATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 501 30 100.0 39 .............................. GCTGCATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 432 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 365 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 99.3 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGGG # Right flank : CCTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTCGGCCATCTTGAGTTGTCGCGGCCGACGAAAACGAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 19863-20087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUS01000009.1 Geobacillus sp. CAMR5420 Contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 19863 30 100.0 35 .............................. CTTGCATGAGTATCGCGGGCAAGAAATTTTCGTCC 19928 30 100.0 36 .............................. TTGGAAATAGTGATAAGGAATTCCGAGACGTTGACA 19994 30 96.7 35 ..........C................... CGAAAAAAGGCAGTTTTCTGCCGTATAACAACAGC 20059 29 86.7 0 ................CA.....-...G.. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.8 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TCCGAAGAGGAGGAAGTCAAACTGCGAAACGAGGTGAGCCAAATGGAGACGAAGGAGGCGAAGCAAGTGATGGAGCTCATCGTCTCGTACGAACAGCGGGGAATGGAAAAGGGAATCGAGAAGGGAATCGAACAAGGGGTCAAACAAGGGATCAAACAAGGTATTAAACAAGGGCGCCAACAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGGTATGATGTCGACACGATCCACGAACTGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGACGGCTCTTCGCCGTCAAGCCCCACATTGTCGTCGACCCCAAATCGTGCCAAAACCCCGGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGCTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTGTGTGGG # Right flank : CCTGTGCCGGTGTACCAAAATATTTGTGTTACCCGTGGTGCTATATAGATGCACCTTGAAAAGTTAACTTCTGGATTACACTGCACACCCTAGGCGTTGTAGCACTTCCTTAGGGCGTTCGTGGATGTAGTCCACAAACCGGGCAATGGCTTGGGCGATATCGTTTTGATCTTTGTGAAACACATTGGCAATGACAGTGTCTTTCAGCCATTTCCACAAGCGTTCGATCGGGTTCAGTTGCGGAGAATACGGAGGAAGGTAAATGAAGTGAAAACTCCGTCCTTCTTCCCGCAAAAACTCTCTCACCGTTTTGGCATGATGAATTCGGGCGTTATCCAGCACCAAGACGATGAGACGATCCGGGTAACGCTCTTTGAGAACCCGCAGGAAATCCAAAAACGTTGTCGCATTGGCCGCTCCTGCTTGATAAAGAACTGTTTCGCCATCATGGACGTTAACGGCGTCAAACAGCGATACGTGAGCATGATGGCCGAACGTCG # Questionable array : NO Score: 8.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10309-14418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUS01000010.1 Geobacillus sp. CAMR5420 Contig10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10309 30 100.0 36 .............................. GATGACCAAGCTAATGTCAACTGCCCAATGGCTAAA 10375 30 100.0 36 .............................. CCCGGTTAAAATGGCGATCCGCAAAACGCACGGATC 10441 30 100.0 34 .............................. CTTGGTCAAATTCTGCGTATTTTTCCGTCAAACG 10505 30 100.0 39 .............................. AGCCGGGAAGATTTTAGGGAAGCGGTTAAACGCTACCGC 10574 30 100.0 37 .............................. ATCCGGTCCCCTGTTTTGTAGGGCTTGGCGTTATAAA 10641 30 100.0 37 .............................. GCTGCATTCGATCGCGGCGTACTATCAAAAAATGAAG 10708 30 100.0 38 .............................. CTAATTGGGCTGGTCAGTTCTCTGACTTGTTGCTCGTC 10776 30 100.0 36 .............................. ACGCTCGATCCAGTCAACAGTATCTTCTATCGTCCT 10842 30 100.0 36 .............................. ACGCCTCATCGAACACAATCAACGCGCTAGACTCTT 10908 30 100.0 40 .............................. TTTTCTTCCCAGCGAATCGGTGACCGGAATTAAACTCCGC 10978 30 100.0 39 .............................. ATAAGCTCGTCCAAGTCGCGTTTGCAGCGCAAGAACTCT 11047 30 100.0 36 .............................. CTCGATGCAAACGGAAATGTGTTGGACGAGCGAACT 11113 30 100.0 37 .............................. CCTTTTTGACTGTCTCGACTTTCTCAACGTCTTGGCC 11180 30 100.0 36 .............................. CCTCATCTGGCACGTAAAATTTCCACCAATGACGAT 11246 30 100.0 39 .............................. ACAACAGTAATAACCAACAAAGTAAAGCGTGCAATACTA 11315 30 100.0 37 .............................. TGAAACAACGCACGCTCGAGCCGATTTTCACCGAAAA 11382 30 100.0 35 .............................. TCTCGAAATACAATGTGATACTCAACGTAGTACCC 11447 30 100.0 38 .............................. CAAGATGTTGATTATTACCGTACATCAAATGCAGCAGT 11515 30 100.0 38 .............................. CGTCTCCAATTCCATTCACTTCTCGCGCCCATAACAAA 11583 30 100.0 39 .............................. GCCCGTTTCTTGCCGCGATCGGTAATATTCCCGAACTGG 11652 30 100.0 37 .............................. ATCATTGCATATAGTCCCTTTTCCCGGAAAAGCATTT 11719 30 100.0 36 .............................. TCCGAATGACGATGCCGACTTTAGAGAAGTGAGCTC 11785 30 100.0 35 .............................. GAAGAACGGGCAGAAATCGCAAACAAAGCGAAAGC 11850 30 100.0 36 .............................. CAACGTCCGGCAGCGGGAGCGCCGCAGGGAGCGGGC 11916 30 100.0 39 .............................. AAATTGTGTCCTTTAGGAGATACTGGTGTTCTAGGAATG 11985 30 100.0 36 .............................. CGATGACAGTCGATTGCATATTTACCTCGCCGACTT 12051 30 100.0 36 .............................. TCACGACACTTTTTCAGGAAAAAAAACTGAAATATC 12117 30 96.7 35 ..........C................... TCATTAAAGTTATCGCGTTCTAGAAGGTACTTCAT 12182 30 100.0 36 .............................. CGACACGAACGGAGGGTGAGGAAATGGAATGAGTTA 12248 30 100.0 36 .............................. TGCTTTATATTCCTCGTTTTGCATAGCCGCTTGGTG 12314 30 100.0 34 .............................. ACGCACAATACGCCGTAAAAGCTGTTTACCGCGG 12378 30 100.0 36 .............................. CTTCTGTGTTTTTGTTCATTTTGATCCCTCCTTTTT 12444 30 100.0 38 .............................. AGAAACGGATAGGAACATCTTCTTCCCCATCTTGCAAG 12512 30 100.0 38 .............................. TCCAATTCTTCTTTTACTTGGTCTAACAATGCTTGCGG 12580 30 100.0 37 .............................. TCAAATTGTTCTGCTGCTCGCTGGGCGCGTCGCATTT 12647 30 100.0 36 .............................. CGCTTTCGTTCCCATCGATTCGACTTGTAGAAAGGA 12713 30 100.0 37 .............................. GCCAAGTTTTTGACCAAGTCTCCATTGGCTTCGACCG 12780 30 100.0 39 .............................. TCACGATATCCGATTTGCTCTCGCATCTGCATTGTTGGA 12849 30 100.0 37 .............................. ATCGCTTGCTCTTCCTGTTTCAAAGCTTCATAGAAAG 12916 30 100.0 40 .............................. ATTTTCTTTATGTCAGCCGTGCTTTCGAAAACATCGAATC 12986 30 100.0 36 .............................. TGAATCATCATCATGGCGTTGCGAGGCATCACAACA 13052 30 100.0 36 .............................. ATGAATGGAAAGCGCGACTTCCATACGCGAAATGAT 13118 30 100.0 38 .............................. CCTTCTTCATTATCGATACTGATCTCTCTACGTTCGAG 13186 30 100.0 36 .............................. AGGATGGAAGAGATATATTTTGCTGGATTCCGAGGC 13252 30 100.0 37 .............................. CACACTTCCCAGTCGTTGATACCGGAACGATAGCACT 13319 30 100.0 36 .............................. TCGGTGACGTGGACAAGCTGTCGCTGTCACGTGTCG 13385 30 100.0 41 .............................. TCAACCGAGCGAGCGAAAACGAGCTGGAGAGCGTTGAGCTC 13456 30 100.0 35 .............................. TTAGTCAAGAACTGAACATTGCATTTTTTAGACTG 13521 30 100.0 36 .............................. TCCGGTTTGCTCAACAAGTAGCCAAGCAACCCTTTT 13587 30 100.0 38 .............................. CGATTGATCCGGATAAATTGCCAGCGATAACGGAAGCG 13655 30 100.0 35 .............................. TAAGAAGGGTGCAAAGGACTACGCATATAACTTGC 13720 30 100.0 37 .............................. CCCGGACGCAGGAGTGTAATCGATAAAAGAGCTGTCT 13787 30 100.0 39 .............................. CAATTCAGCTACGCTTAAAACAGCACTTCCATTTCTCCA 13856 30 100.0 37 .............................. AATTTCAGCGTCTCACAATAGACAATTGCGTCGATCG 13923 30 100.0 36 .............................. CCAGCCGAGGAAGGCGGTGATATCCTAATGGTGAAC 13989 30 100.0 37 .............................. GTAGGGTATAAAGAACTAGTGATCAAACACAATAGCT 14056 30 100.0 37 .............................. TCCATCCGATGAAGATGAATGTTGCGAAAGTTTTGGA 14123 30 100.0 34 .............................. CAGCAACGATTGGGACTATGCAACGCGAGCGCAG 14187 30 100.0 36 .............................. TGATTTTGTTTTCCATAGCAACTTCCTCCTTTACGA 14253 30 100.0 39 .............................. ACGGCAAACCCTAGCGCTCCGCCAATCGCAGTGGCCGCC 14322 30 100.0 37 .............................. GCAGAAAATGCCTTTTCCACTTCCGCCAACACTCTTT 14389 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ========================================= ================== 62 30 99.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GCGCCCGTCTTGAGCGCCGGAAAATCGAGCAGGAAATGGTGGAGCGAAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCCCTCCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAGGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGTATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGGGGT # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCTTTTTCACGATGGGGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACAGGGGTGACGGCAGTGCTGCCGCACGGGGGCAACTCGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //