Array 1 8436-9318 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVU01000049.1 Escherichia coli strain VREC0428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8436 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 8497 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 8558 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 8619 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 8680 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 8741 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 8802 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 8863 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 8924 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 8985 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 9046 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 9107 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 9168 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 9229 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9290 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17925-16737 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVU01000047.1 Escherichia coli strain VREC0428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17924 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 17863 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 17802 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 17741 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 17680 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 17619 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 17558 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 17497 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 17436 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 17375 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 17314 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 17253 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 17192 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 17131 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 17070 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 17009 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 16948 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 16887 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 16826 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16765 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //