Array 1 319188-319420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 319188 30 100.0 37 .............................. AAAGGAAATAAGGAAGTGCATGAAGGGCAGTTTTTGC 319255 30 100.0 37 .............................. TCAGGAGCCTCATTTTCATATCGGGGAACTGGATCAA 319322 30 100.0 39 .............................. GGTGTTTCTTTCGTAACCGAATTGCCAAATAACACTTCG 319391 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 100.0 41 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TCCGAAGCGGAGGAAGTCAAACTGCGAAACGAGGTGAGCCAAATGGAGACGAAGGAGGCGAAGCAAGTGATGGAGCTCATCGTCTCGTACGAACAGCGGGGAATGGAAAAGGGAATCGAGAAGGGAATCGAACAAGGGGTCAAACAAGGGATCAAACAAGGTATTAAACAAGGGCGCCAACAAGGGATTGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACTGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGACGGCCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCCAAAACCCCGGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCATCAAGTTTGAATGTTATTGACAGAATATTTAAAACGTGGTATTCTGGAAACAGCCAAAAGGGGAAAAGCTTGATTTGATGCGCATGGTTTGGG # Right flank : CTTCGGCAGATGATCAAAGAAGGCCTGGAATCCGGGATTAGATTCGGCACAGCGAACCGGGAAATCTGCTTGTGTCTACTAGTTGCAATGAATGAACTGGGGGTGAAGAAACCATGATCACGATCTATGACTTGATCGGCTACATTCAAAACATGGACAACATGGACAAATTGGATGAAATCATCAGTCGATGGTACTTTCAAACGTCTGTCTGGACATCACAGGTGAAAGAAGAAGTCAAAAAAGCGGTGGTCGAAATCCTACAACTAGGCGAACCTAAAGTGTACCAGTTTTTTGTGGATATGTACGGTCTTAAAATGTGAAGTTTTTATCGTACCTATAAAGGGATTGAAACGTCATCCCGGTCGTGACAATTGGAGTTCCTTCTGCCGTTTTTATCGTACCTATGACGAATTTCTCACTGTGAGCAGGATGCCGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCATCAAGGTGAGGTGATTGAATGGCGATTGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 354127-355157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 354127 30 100.0 37 .............................. CGTTGATTGATGAATATGGTGTGCTACCGGAAACGGA 354194 30 100.0 39 .............................. TGTTGATATGAGGCGTCACAATGCGTTTGATGTCGTCGT 354263 30 100.0 37 .............................. ATCGCCCCGCCTGCCGCGGGAAGATGGTGACAAGCGG 354330 30 100.0 34 .............................. GCGGTGGAAAATCATCGTTCAGTGTAGCGGATTA 354394 30 100.0 35 .............................. TTTGACATTGGCGGTTGTGGCTGCTTCGTGGATGA 354459 30 100.0 39 .............................. ACTTGGATGACTACGTAACACGCAAAATCGCCCGTGCTA 354528 30 100.0 38 .............................. TACGATGAGTTGCGGTTTTTGGGTGTGCCGCCGGAGGA 354596 30 100.0 37 .............................. CAACGCACTAAAAGAACACAATGGCAAGATCACTGTG 354663 30 100.0 36 .............................. ATTGTTAGCTCGTTCATCTCAGAAAATGAAAGACCG 354729 30 100.0 39 .............................. CTTCGGCGATCCGTCCAGTCGCCTTCAAGTGAGGTTTTA 354798 30 100.0 36 .............................. CATTTCCTCGACGATCTGGACAAGTTTGTCATGCTC 354864 30 100.0 35 .............................. CGTCGACTTGCGGGAGCGAGGGAACGTGCACAATA 354929 30 96.7 38 ........T..................... TATTCCGCAAGCCTTTTCGCAAGTCTTTCCATGTCCTC 354997 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 355064 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 355129 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 97.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCACGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGGG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGCCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACTAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACGGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGGTGGGGAGACGCAATCAAATCACGGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGTAAAGATGTCGATGAAC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2012253-2011756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2012252 30 100.0 36 .............................. TTCGTTGATTCCACGTCCAGACCAGAGTAGATGAGA 2012186 30 100.0 36 .............................. TCATCCGAATGAATCGGCCATCTGCGGCCATACCCT 2012120 30 100.0 41 .............................. AACGTTGCTATGCCGCGATACCCGATTCCAGTGTCAGCCAG 2012049 30 100.0 35 .............................. GAACCCTTGCTCGATGAAATTCAGTTGCTTATCAC 2011984 30 100.0 39 .............................. TCATCCGGCCCGCACCAAACGTAATCTGCTTTCCGCCGG 2011915 30 100.0 35 .............................. TAATTATTGAATAATTCTTCCCCCGTTGGCACTTT 2011850 30 100.0 35 .............................. GTTGTCATCGTAGAAGGTACTTGCATAGGAACTAA 2011785 30 86.7 0 ........G.......C....A.C...... | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 98.3 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAGCCAACGCGGCTAGACCGTATTGACAGAATTTTTGAAACGTGCTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATGGTTTTGGG # Right flank : TATTCCCCCCCACAGCTGAACCGCCGCTGAGTTCGGCTTGTTTTACGGCTCAACGTCGGAAAAGGGCAAATGGCGCATGCCCAAAAAACGTGGGAGGGATAAGGAGGAATTTGGCCGCGAAGAACGAATACAGTACGGTGAATCCGACAATTGCAGGGAGGGAAAACGTGGCCAAACAGCGCATCGATCATGACCGGTTGTTCAAAGAGTTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCCCGATCGCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2021363-2020602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2021362 30 100.0 34 .............................. CGATCGGGATCAATACGGGGCTGCGGATCAGCGA 2021298 30 100.0 36 .............................. TCCACTTTTTTCGCCAAAAGGAATGCCCTAGAGGGC 2021232 30 100.0 37 .............................. AAGCTTTTTTGGGATAATGTTTTGAAGTGGTGATTTA 2021165 30 100.0 34 .............................. ACCTTTCTTCGCAAAATGCCCATCAAGACATCAT 2021101 30 100.0 37 .............................. TGTAGAGGGGGATTCATCTTGGGAAATGATAAAACTC 2021034 30 100.0 34 .............................. CTCGGATATCGAGGAAGCCCTAAATACACGGAGC 2020970 30 100.0 37 .............................. CATTTCCGCAGTAATTGTTCTCTTTGGAGAAGTTTCC 2020903 30 100.0 37 .............................. TCAAATACTTCTTTGGCTTCCATGAGTTTCTCGCGGA 2020836 30 100.0 36 .............................. TTGGCGCAATTCTTCGTCGCGTTGTGGTTTGAAGAA 2020770 30 100.0 42 .............................. AGTGCCGCGCCAGGCACGTGCTCGCCGTTTTTGAGCCGCTCA 2020698 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 2020631 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ========================================== ================== 12 30 98.9 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CAACCCGTCCCTTTCCGACGATATCGTCCGTGTCGCCCGTTCGCCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCGACGCAATACTGCACACTATTTGGCAGCGTTCCTGCTGGTCTCGCCAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCTCTGCAACAAACGATCGCACACCACGGAATCGAAGGAGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCCGCGGTGAGAGAAGAGTACGAGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGTCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGGG # Right flank : GCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2116261-2116108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 2116260 24 100.0 42 ........................ TAAAGATATAAAAAAGACGATTACGGATACGGGGAAGAAAAT 2116194 24 100.0 39 ........................ TAAAGTAGTTTAGCGATCCCGCTTGAAAGACAATCGTCA 2116131 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 100.0 41 GTTTGATCTGAACGGAGAGGGATT # Left flank : GTATTTTGAGAAAAAGGAAGGCTTGATGAACTAAGAGGTTGGTGATTTAGTACAAAATACTCCCATCTCCACATGTTTCTCAATTAGAGAAAAACTGTGGAATCAGCCTTCTTTTTGGCGAAATACCGTTGATTTGCTCGTGACAGCAGTTTGTCACCGGCATTCTAGAAGACTGGTGATTTAGTGAAAAATTGCAGAAAACAAAGCCTCTTCTCAAATTGAGAAGTCCTGTAAAATCAACGTTTCTCTTTCAGCCGAAAGCAACGGGTTCGGGGAAATCGGTCGTTTTTCACCAGTCCTCTAAGCTTTAAGAATTTGCAGTGAACCGTATTTTAGCGGACGAATGGGAGAAATCTTGATTTATCAAGGGCAGTGCTTCATTATTTGCGTAACATTAAAAACACGATTATTACTTTACTGCAAAATACGGGATAATTGATGCGTAGGCATTAGCGTGAATTGCTTGCTACATCAATAAATATTATTTTGTAACTGATAGG # Right flank : ATAAGGCCGCTTGTTTGCAGCGACCTTAGTTGAGCGCTCCAATGAGCGCATCCTTGGTATCACAGTGAGGCGCTAACTAATCGCCACTCCTGCACTCGCATACCCCATGACGGAAGCGGCGATTGAAAGGCCGGAAGTGGTGATGAAAAACGCTATGAGCGGCCGTCGATGAGGCGGTTGGCGTTTGCCGCGAGCGCCAGTTTGTCGAGCATCGACGAGTGTTGTTCCCTTAATGACGGATAGTCCATCACTTCCGCCAATCCGAGAACGCGTTCATCGTTGAAAAACGGCGCCAGTTCCGCCGCGGATAAGGAGGCTCCGGCATGTTCGAACGAAGTGGCGGGCACGCACGACGGCAGCATCATATACACATCGAGCGGCGTCCGTTTCGCATCGTCGAGCATAAATTGTATGCCGCGGACGCCAGCGACATTGGCGATTTCGTGCGGATCGGCAATGACGGTCGTCACGCCGTGCGGAAGAACGACGCGGGCGAATTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATCTGAACGGAGAGGGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 2487348-2485940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2487347 37 97.3 37 .......T............................. ATTCCGGTTACCAACTAGCTATGCTTCGTCTGTAGTG 2487273 37 100.0 33 ..................................... TACACTGTATCAGCCGTGAAGAAGCGACAAATT 2487203 37 100.0 36 ..................................... TTTTTGTACCAGCCCGCAATATGCCATGCGGCGCGT 2487130 37 100.0 35 ..................................... AGAAATACGAGAACCATCAAGACATCTATTTCTAC 2487058 37 100.0 38 ..................................... ACAGGAACTCCTCGTCGATCCACAATTTCAATCTTCGC 2486983 37 100.0 37 ..................................... ATACCTACGAGCGCTATATCATCGAGGAATACAACAA 2486909 37 100.0 36 ..................................... TCGATCACCTTGGCAATCGCCTCATCCAACGTCGTG 2486836 37 100.0 36 ..................................... CTGGTGACGGGCCATAAACGAAACCAGAGATCGTGC 2486763 37 100.0 33 ..................................... AATATGCGCTGTATGGCGTTGGTTCGGTGGCAA 2486693 37 100.0 35 ..................................... GAGAAGGCCTCTCTCGCGCCCGTAGAGGCGTCTTT 2486621 37 100.0 35 ..................................... ACGCCCACCTCAACGATCAGGAACGTGCCTTGTGC 2486549 37 100.0 35 ..................................... ATACAGGACTTGTTTGGGATATTTGTCCGACGCTT 2486477 37 100.0 33 ..................................... TACACATAACCATTCGGCCGTCGTCTGGCTGTA 2486407 37 100.0 35 ..................................... ATTTGCACCTTCCCAAACCATTCGAGCATGTTCTC 2486335 37 100.0 36 ..................................... AAGTACGCGCATCTTGTGGCGTTAGAGAAGACAAAG 2486262 37 100.0 35 ..................................... AATGACCGGGATTGGTTGGCAAAAGCGGCGGCGGT 2486190 37 100.0 34 ..................................... AATATCGGGCTTGTATTTTCTTAACAACGCAAGC 2486119 37 100.0 34 ..................................... TAATTGTTCTGGCGTCAGCTTGGCTGCGATGTAG 2486048 37 100.0 35 ..................................... TTTTGCAGATCGGCTAACACCTCGGCGATGCTTGC 2485976 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 99.9 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : CGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : AAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTTCATATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCAACAATTCCGCGAAGCCGATGATCATGTCGGTCGCCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCGGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 7 3240647-3240351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063162.1 Geobacillus stearothermophilus strain DG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3240646 30 100.0 37 .............................. AAAATCCCAGTTTGATATATTCGGATAATTATATTGA 3240579 30 100.0 37 .............................. TTTTCGATGATCAGTGAAGTTTCCTTCCCGATCCTTG 3240512 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 3240447 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 3240380 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGGG # Right flank : CTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTCGGCCATCTTGAGTTGTCGCGGCCGACGAAAACGAGCGTCATGGCGCGGCTCATTGGCCAACAGCCAGGCCGGGTCGTCGCCATTCGCGCTGATATGGACGCATTGCCGATTCAAGAGGAAAACACGTTTGAGTTTGCCTCAAAAAACCCAGGCGTGATGCATGCGTGCGGACATGACGGCCATACGGCGATGCTTCTCGG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //