Array 1 1551-143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPK010000012.1 Pseudomonas aeruginosa strain PAL1.44 NODE_12_length_184202_cov_22.845, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1550 28 100.0 32 ............................ TGCATGGAGTCGCAGACGCCTACACGCATCAG 1490 28 100.0 32 ............................ ACAACGTGCGCGAAGTCTCCCGCACCTTCGAC 1430 28 100.0 32 ............................ ACCGAGCCGACGGCGATGCCGGCGTTGGTGCT 1370 28 100.0 32 ............................ TGGCCATAATCCTGTCGATCAGCAGCTTCAGT 1310 28 100.0 32 ............................ TTGTCGGCGCTTTGGGCGTCAAGGCCGTACTC 1250 28 100.0 32 ............................ TGGACAAGGTCACGAATTGCACGGTTGATCTT 1190 28 100.0 32 ............................ AATCCAGCTTCAGGCGAGGTACCAGAATTTCG 1130 28 100.0 32 ............................ TGCCCTCTGACCCTCTGGCGAAGAGCGGGATA 1070 28 100.0 32 ............................ TGTACTGGATGGGTTGGCGTGTCTGCGACATC 1010 28 100.0 32 ............................ TACGAGAAGTAACAATCCTTTGTCATGGAAAA 950 28 100.0 32 ............................ TGACGATCAACAAGACTCGGCAGCATGTACTG 890 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 830 28 100.0 32 ............................ ACATCCATGACCTTTCGATGCTTGCGCGTCGG 770 28 100.0 32 ............................ TAGCTTCGGCTGAAGGCGCGTCGGACCTCATG 710 28 100.0 32 ............................ AGCAGAGAGTCAGCCACCGGGATGATGTAGCC 650 28 100.0 32 ............................ TAGATGTAAATCACGACGGAACGCGCCGAGTA 590 28 100.0 32 ............................ AGCCAGTTGCAGCTATCCAGCATGCGCATTGC 530 28 100.0 32 ............................ TGGGAGCTTGCGCCCCTTGGCGTATACCCACT 470 28 100.0 32 ............................ ACAGGCGATCACCATGCGGCCGATGTGCGCTG 410 28 100.0 32 ............................ TTCGACTGGCTGATTGCTCCCTCGAACTTCGT 350 28 100.0 32 ............................ GCCCTGGGCCGCCTGGTCGAGCCGACCGATGT 290 28 100.0 32 ............................ GAGAAGATCAGAAATCGAAGCGTGCTTGTACA 230 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 170 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGAGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGCCAATGTGCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8801-8414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPK010000023.1 Pseudomonas aeruginosa strain PAL1.44 NODE_23_length_49254_cov_24.0807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8800 28 100.0 31 ............................ GGAAATGCAACAGCGTCTGCGCAACCTCAGA 8741 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 8681 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 8621 28 100.0 32 ............................ ATCCGGCGCATGAGCGAACGCCCCTCCCAGAT 8561 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 8501 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8441 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 95.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGTGGTGTGGCGATATCACCTACATCTGGGCGCAAGGCCGCTGGCATTACCTGGCCGCGGTGCTGGATCTGCACACACGGCGGGTAATCGGCTGGGCGTTCTCGGCCAAGCCGGACGCCGAGTTGGTGATCAAGGCGCTGGACATGGCCTACGAACAACGCGGCCAGCCACAGCAGGTGCTGTTTCATTCAGATCAGGGCGCCCAGTACGCCAGTCGTCTGTTCCGGCAGCGACTTTGGCGCTACCGGATGCAGCAGAGCATGAGCCGTCGAGGGAACTGTTGGGACAATTCGCCAATGGAGCGCCTGTTCCGCAGCCTGAAGTCGGAGTGGATCCCGTCGACGGGCTACCTGACGGTGCAAGAAGCCCAGCGGGACATTAGCCATTACCTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGCTACCGCCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCACTACAG # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11000-10072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPK010000023.1 Pseudomonas aeruginosa strain PAL1.44 NODE_23_length_49254_cov_24.0807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10999 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 10939 28 100.0 32 ............................ ACCGTGCGCGCGCCGCCCGGTAAGAGCCCGAT 10879 28 100.0 32 ............................ CTGAGCGAGCAGGCAGTTCAGCGCGGACAAAC 10819 28 100.0 32 ............................ TGAAAAAACTGTTCGTTCGTGGTGGTTCTGCC 10759 28 100.0 32 ............................ AGGAAGCCCATGAGGACGCCCGGCCAGAACCC 10699 28 100.0 32 ............................ TTGAAACAGCCTCTGGTCATAGGGTAGGGGGA 10639 28 100.0 32 ............................ TCCAGCGCCATCAAGGAACTGGCGGACACCAT 10579 28 100.0 32 ............................ AACAACAACAGCCAGGTGCTGGCCACCACCAA 10519 28 100.0 32 ............................ AATAGCCCGTACAGTCCGGTGGGGATCGTTGA 10459 28 100.0 32 ............................ AAGCGCTGCGGGCTGTCGCGTTGCGCTGCTCG 10399 28 100.0 32 ............................ TCGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 10339 28 100.0 32 ............................ ATCCCGACGTGGGGCTGATCGACGCGAGCGCA 10279 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 10219 28 100.0 32 ............................ GCCATCACCACCAGGGTCTTTCGGGTCGGTCG 10159 28 100.0 32 ............................ TTCCCGGCGCACCTCGAGGCGCTGCGCGAGTG 10099 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : TGGGCGATCCGCCGTAGGCGGCCCCGGAGACGGTTGTAGTGGTCTACTGATCCCGGACACCGATTTAGGCGAGAGTCCTCGCCCTGAGAGAGGTGTCTGATGAGCAAGCAACGACGTACATTTTCCGCCGAGTTCAAGCGAGAGGCCGCCGCGCTGGTGCTGGACCAGGGCTACAGCCATATCGAGGCCTGCCGTTCGCTGGGGGTGGTGGATTCGGCCTTGCGCCGTTGGGTGAAACAGCTCCAGGCGGAACGCCAAGGCGTGACCCCGAAGAGCAAGGCGCTGACGCCCGAACAGCAGAAGATCCAGGAACTGGAAGCCCGGATCAACCGGCTGGAGCGGGAGAAAGCGATCCTAAAAAAGGCTACCGCTCTCTTGATGTCGGACGAACTCGATCGTACGCGCTGATAGACCAGTTGAGTGAGCAGGAATCGGTGGAAGTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGCTACTACGTCCACCGTCTTCGACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 119425-119037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPK010000015.1 Pseudomonas aeruginosa strain PAL1.44 NODE_15_length_119812_cov_23.5318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 119424 28 100.0 32 ............................ TTCACGCGATACCCAGGGTCCAGGACGTCCAT 119364 28 100.0 32 ............................ CGGTGGTCGGGCTGCGCCTAACGTAACGTCTG 119304 28 100.0 32 ............................ ACGTATCCCGAGCGCGAACGCGGCTTGTGCAT 119244 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 119184 28 100.0 32 ............................ AACGCAACGACCGGCTCTACGGGCGCCGACGG 119124 28 100.0 32 ............................ CGCAGGAAAATTTGCTAGCACTTTTCGACCTG 119064 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAGTCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGTATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGGCGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGTTCTGTACGTGTGAGCTCATCCTCTAAATGGACATACCAAACCCATACAAATCAGCAGCTTGAGATTTTTTGTCCATTGTCCATTTTTTCCCAGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //