Array 1 58841-59785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIIN010000034.1 Escherichia fergusonii strain EF126 126-1-p_(paired)_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58841 29 100.0 32 ............................. ATCCGCAGAAAGTTAAAGCTGAGTATGCTGCC 58902 29 100.0 32 ............................. AGACTGCCGATATTATCGACCCCAACAATCCA 58963 29 100.0 32 ............................. TTGCGGCGGCAAATGAATTCGGGCCACACGCG 59024 29 100.0 32 ............................. GCGGCGATCATCTTTGACGCCGACCTGTTTCG 59085 29 100.0 32 ............................. CGGCTGATAGCGACGAAATTACCAAATACCTG 59146 29 100.0 32 ............................. GTACCGCGACTCACCAGATAGAAATAACGCAA 59207 29 100.0 32 ............................. ACAGTTGACGCGTCGGTGCTGTGCCAGTTCGT 59268 29 100.0 32 ............................. TTCGTCGGTGACATCACGTCGGCGTCACCGTC 59329 29 100.0 32 ............................. CCCATAATCACCTCTACGCCCGCGCCGAAACG 59390 29 100.0 33 ............................. ACAATAACAAAAGAGCAAGTCGCACGTTTGCGC 59452 29 100.0 32 ............................. CCCGGCGAACCGTCAACAACCGCTGATGACGA 59513 29 100.0 32 ............................. TTCCATAGCGACCTGCACAACCACCGGGGCAA 59574 29 100.0 32 ............................. TTTTCTTTGCGAGGACGCACTAGGAATGCCCC 59635 29 100.0 32 ............................. CTCCCGGTAATTGAAATCCCTGGGAGCGAAAC 59696 29 89.7 32 ................T.A..A....... GCTTCAGATACATATACTTTAAGTGCAGCGCT 59757 29 72.4 0 ........A..T...A.AC.AA...T... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCTCGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGGTTTTAGTGGGTATAGAGTTATCTAAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAGTTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGCCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTACGCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27861-26552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIIN010000047.1 Escherichia fergusonii strain EF126 126-1-p_(paired)_contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27860 29 100.0 32 ............................. CTCCAGAACAAACGCTTAATATAGGGATTCCT 27799 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 27738 29 100.0 32 ............................. TCAGTAAATGCCAGCAGCCTGGAGCCAGCGCT 27677 29 100.0 32 ............................. CCAGTAATCACGGACGCTCTCAGCGTCTTCGC 27616 29 100.0 32 ............................. TTGACGACGCAAAAAAATAATATCCGGCAGTC 27555 29 100.0 32 ............................. GCCGTGTTGCGCTCGCTTGTTACCACGCTTGG 27494 29 100.0 32 ............................. CCTGATAGCGCCTCCAGCCCTCGCCCTGGTGC 27433 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 27372 29 100.0 32 ............................. CTGCTTATTGCCATTGCCCCAGCAATACCAGC 27311 29 100.0 32 ............................. GCTCGGGAATAATCGAGTACGCCAGGAGTATT 27250 29 100.0 32 ............................. GCGATTTGTCGCGCATGTCACCGAATCGGAGA 27189 29 100.0 32 ............................. CAATTAGAAAACGCAATGACCCGCGCGCCCAT 27128 29 100.0 32 ............................. AGATTAAAGGGCCGCAGCATAACCCGGAGATC 27067 29 96.6 32 ............G................ GCAAACCGAAAAATACTCGCAGTATGCCTGTC 27006 29 100.0 32 ............................. AATTTTACTGATTCAGCAGGGCAAATGAAATC 26945 29 100.0 32 ............................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 26884 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 26823 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 26762 29 100.0 32 ............................. AACATGAGTGGGCTTGGTTACATTCGGGGAGC 26701 29 100.0 32 ............................. TATTTGCCGTTCTTTCGCGTGCGCCGGGTGAC 26640 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 26579 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATATCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94804-94951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIIN010000006.1 Escherichia fergusonii strain EF126 126-1-p_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94804 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 94864 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 94924 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATTGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //