Array 1 4289-4619 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGX01000107.1 Gilliamella apicola strain Fer1-1 Gilliamella_apicola_Fer1-1_contig89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 4289 26 100.0 35 .......................... CCCAACTCTTCAGCAATATCCGTATTTTTAATCGC 4350 26 100.0 35 .......................... CCGCACTTCTAGTGAATTGCGCTCGATTTCTAGCG 4411 26 100.0 35 .......................... CCGTATCTACGCTAAATAATCAGCGCAGATATTTG 4472 26 100.0 35 .......................... CCGCGTTAGCCCAAGAGATAGAAGCAGAAGTTATC 4533 26 100.0 35 .......................... CCGGGGTTGAGATCGAATGGACGGCTGGCACTCAA 4594 26 92.3 0 ..................A.....T. | ========== ====== ====== ====== ========================== =================================== ================== 6 26 98.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAACACACGCATTTTAAAGCGCATAGGAACCGAATACCCCTCTAAGTCAGCAGGTATTGACGGCGCACCAATGGATTTTAATTACCGTCAGTATTTAACAGAAGATGAAGCGCAGATTGTTGATAATGCTGTTTTAAGGCTCAAAGCGGATAATATTGAATATTGGGCGGTATTAACCTCTTTTTATCTACGTGACATTTCATGCAGTAAGCAAGCAAAAATATTAGGTAAGCAAACAACAGAAATGACAAAAATATTATTAGCAGCAGAATGTTTTATACGGGGGCACATTATTGAATTATTCCCAAAAGTGGCGTAGATAACCATGATTATAAAAAGAGGTATTTTGGATTGTTAATTAAAATTTATTTAAAACAAAATGTTATGTCTGATATAATCTAATTGGTCGTTGAATAAGCGGTTTAGCAAAAGCGCTTAAAAATTGGTAGAAAATTTTAGTTAATTATTTTATTTATAAAACAAATAGTTATAATTAGA # Right flank : ACCAGTGCTTTTAGAAGCAATGAGTGAACTTCGCCCTAAAATGGACAAATGCCATGCCAGTTAAATATAAGTATGCCAGGTTATTACCAAACGTGGGCTCAAATTAAATGGGCTATTTAGTTATATCAAAACATCTGATTAGCGATATAAAGTACGTTTAGGTGTAGCTTAGTGTACGATATCAGGAACAAAGGCTATGATATAACAGAAAAACGGCAAATCGGGCATGATAAAAGTCACTCAGAAAACCCATTGATTTTATTGAGGTTTTTAAGTGATAGTGAAAGGTAACATTAATGCTTTTACCACAAAACTACCTTATTTTAACTCTATGCCTAAAATTATTCATACACTAGAAATGGAGCTACAAATTATAGTAATAAAAAAAGCGTGAAATATACAATAAAACACTTGACTGTTTAAACGTTTAAATATATGATATGTACATGATGCGGTTTTAAGCGCACAGAATTTAAGTCCGCTAAAATAGTTGGGCTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42890-42617 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGX01000024.1 Gilliamella apicola strain Fer1-1 Gilliamella_apicola_Fer1-1_contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42889 29 100.0 32 ............................. TTTTTATTTTAAATGATGAGCTGGCTCATCAT 42828 29 100.0 32 ............................. ATTTTTTCTTTCATTGAGTCTTCTTCCTCTTT 42767 29 100.0 32 ............................. CGATATCAATTCTAGGTGGAATGGTAAATAGA 42706 29 100.0 32 ............................. GTTACAGCCGAGCAAACAGCAAAACTTAGAAA 42645 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCTGTAGGTACAGGGATAAACCG # Left flank : CTTATTGAAGAAGTTTTGTCAGCCGGCGGCATTGAACCACCACCACCTCCAGACAATGTTCAACCTCCCGCTATTCCCGAACCTCAATCTCTTGCCGATAGCGGTTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTTGTAACTGAAAATGTTCCAGCTCGATTACGAGGCCGTTTAGCCATTTGGTTACTTGAAATTAGGGCAGGGGTTTATATTGGTGATATATCAAGACCGATAAGAGAAATGATATGGCAACAAATTGTTAAACTCGCAGAAGACGGTAATGTTGTCCTTGCCTGGGCAACTAATACTGAATCAGGATTTGATTTTCAAACCTATGGTACCAATAGAAGAGTTCCGGTAGATCTTGATGGGCTACGCTTAGTATCATTTTTACCTATTAAAAATCAATAAGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGAATTTAATAGCAGATATAAGTTTAAATAAAACAAATATCTATATTTAGA # Right flank : ATAGAAATTTTATTGATATTTTTATCAAATTTGATATAATTATTAAAAATAACAAAACAGATTGATTAAATGTTTACGATAAAAACGCATGATGATGCTAAATCTGAAATTCTAGATTTACCCGCAGAATTAAGAGGTCGAACAATTAAATTGATTGAAAAACTAGAACAATTTGGACAAATGCAAATGCCACATAGTAAATCGTTGGGGGGTGGGTTGTTTGAATTGAGAGCGTTAGAGCGTAATAATATAGCTAGAACTATTTATGTTTATCAAAAAGAGCAAACGATTTTTATTTTACATGCGTTTGTTAAAAAAACACAAAAAACACCAGTTGGCGCAATGCAAATAGCGAGAATCCGACTGAAGGAGATGATTGAAAATGAATAAAAAACACAGCACAACATTTAATGAAATCAAAGATATCGCGCTAGCAGATCCTGTAGCGCGTGCGGCATATGATGATGCAGAGGACGAGTGGAAATTACGTGAATTATTGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTAGGTACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [88.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25600-25152 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGX01000037.1 Gilliamella apicola strain Fer1-1 Gilliamella_apicola_Fer1-1_contig25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25599 28 100.0 32 ............................ CTGTCTGGATGTATTCTGCGAGAGATATTGGG 25539 28 100.0 32 ............................ ATCTGTAATGTGGATCCATGTCGATGTTCTTA 25479 28 100.0 32 ............................ AGTTTTTTAAGTTATTAGAAGAGTACATGACG 25419 28 100.0 32 ............................ ACTCCTTTTGCTATTTCATAGATACGGCGTTT 25359 28 100.0 32 ............................ TTTGTATAATGTTTATAAAACTCTCGGTGGAA 25299 28 100.0 32 ............................ AAAATATTAGAGGAACCACTATTGATCTTGAA 25239 28 100.0 32 ............................ TCAAAAACCTAATCCACTGCTGCGAATCAGAA 25179 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : GATTTGTTGTTAATTTTCTATCTGCGAGCTTTTATTTGCTTTATTAAGGTGATAAATCCAATCCTAATTATTTCTCTGATTTTCATGTATCCCAACAAATTGAGCCGGCCGCGCTTCTTCATTTTATTGTTGCTTGAAAGTTATTGATGGGCATCATCCAATATCTTTTAAGAAAGATAATAAAGAAGTTAATCGATATAGGTTATTTATCTATTTATAGATAGATAAAATTTGAATCTGAAAACGCTTAACGCCATTTTTAATGGCTTTTATTAAAAAACGAATGTAAAAAAGCGAAGCAAATTAGTCTTTGGTTTTTAGGTTTAGGTTGTGCTATGTTATGACAAAGTCAAAAAACTAAAAACCAAAACCCTTTTTTTCGCCATATTTTAAAAGTAAAGAAAATCAAATAATTAAAAACTTTCCTCAAAAAAGGGTTTTTAAAACCCAAATCACTATTTGCCTTTTTGCATACAAAATTGATAGTATATTAGCTTCTA # Right flank : TATGATAAATGATCTCCTAATAACGATAAGCTGTTTTGCTGAAAAATACTTTACGCAGTATTACCGTATGATAAAAGCGAATAGATCGTTGTCAACGTTATGAGGCACTAGTTATTTGTTGTTTTTGCCATATCTCCGTGAAATATCTATCACTTTGAGCTGTTTTACTCGTTTGTGGGCATGGGGGGATTTTGTCAAATTTGATTAATACCATGGTTATCATACGTTATTAACAAATAAGATACTGGACGTTTTTATTTATTTCGAAACGGTATAGAATCCTGAATGTTTTTTACAAAAAATAACTTAAAACGTGACAGTTGTGTAAATACATTCATAATGATCATACAACCACGTAAAAATTACGTTGCTTGTTTTTGTGTGGTATATGTAATGGGTATTATGATAGTTGATGCTTGAGCCGGTCTTTTGGGGTTATCAATGGTTGGATAATTGATCCATAATTCGTTTAGCCAAATTAATAGCGATGGTTTTTTAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13144-13890 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGX01000061.1 Gilliamella apicola strain Fer1-1 Gilliamella_apicola_Fer1-1_contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13144 28 100.0 32 ............................ CTAGCAAGCTGAGATAAGTAATCAGATAAATT 13204 28 100.0 32 ............................ ATGGGTCAAGTTGTTGTAACAGTGTCAGAATT 13264 28 100.0 32 ............................ ATTATTTGTGAAGATGATGTTACTTACCATGT 13324 28 100.0 32 ............................ AGATCGGCTAAGTCGATTGATTGAATTGTCAT 13384 28 100.0 32 ............................ GTTACAGCTGAATTGGTAACAATTAAAAATTT 13444 28 100.0 32 ............................ ACCCGTGGAACGAACTGGAGAACTCGGTAAAT 13504 28 100.0 32 ............................ CGGGATATAATTTAAGCCGTCGATAATTGTAT 13564 28 100.0 32 ............................ TAAACGCGGTGCTCGTCGTGAGAGAAATCGTA 13624 28 100.0 31 ............................ GACGCAAAAAAATAAATGCTGAAAAATGTCT 13683 28 100.0 32 ............................ TGTTACGAATAAAGTGGTTTCATTTTATCGAG 13743 28 100.0 32 ............................ CACCTTCAGGCGGCAATAAATGGGATTATATC 13803 28 100.0 32 ............................ TATAATAAAGTCTTTATCAAAGAAAGGATACA 13863 28 78.6 0 ....................G.GC.TTT | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : ATCGACTAATTGCAAAAAAATATCTAAAAGATCTTCAGAAAGACCATCAGTTTTATAATTATGAAATTGATAACTGACATGGTGATCATCAAGCCAAGTAAAGGCCTTTTTCATTGTATTGCAGTTTTTAATGCCATAGATGATGTACATAATAGAGATCCAAGTTTGAAAGATAACAAAATTATAGCAGTATGGGCATTGTGCAGCAAATTGCAAGAAACTATTTGGTTAGATATCTTATTATTGATTGATTTAGTGTCATTAATTTTTTATCCCTTGGTTTTATCTTAAAATAGAAATAAAACCAATGTGGTATCTGATGTTTTTTGGTGAAAAATTAAGTTATCATATAAAAATTTAAAAACTTGCTACCCTTTTTTTTAACAAAAAATTAAAACTAATAAAAACAATTGGTTATAAAACCTTTTCAAAAAGGGTTTTTGAAGAAAAAAATCCTATTTGCCTTTTGCTAAACAAAGTTTATAGTATATTCGTTTCTA # Right flank : TATAATGACAGTAAAAATCTATTGGGAATTTAAAGGACAATTAGCTATTAGATAAGGATAGCCTTTAGGGATTTTATATAAAATCCCTTATTTAATTTAGCATTTATCAACAAAGTAACGCATAATGCGATTATCATTAGTTAGTTCGGGGTGAAAGGCGCAAACTAGGATATTGTTTTGTTCTGCCATAATACAATGCTGTTGGACAAATGCGAGTTGCTGAACAGCTTTTCCTGCTTTGGCAATATAGGGGGCTCGAATAAATACAGCGGGTATTTGTAGACCAACAACTGGTATATCTAAGGTTGTTTCAAAGCTGTTAACTTGGCGTCCAAATCCATTTCTTTCAACACTTATATCGATTAAATTTAATAACTCTACTTCGTTATGTGTTGTGCTTTTACCGCAAAGCACAAGCCCAGCACAAGTGCCAAAAATACCTTTGCCTTGTTTAGCAAATTGTTGAATGGGTGTTAAAAGCCCATTTTGTTTGATTAAAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5897-5329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGX01000081.1 Gilliamella apicola strain Fer1-1 Gilliamella_apicola_Fer1-1_contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5896 28 100.0 32 ............................ GAATGGCACAAAATCAGCGAGTAGCTGTAATT 5836 28 100.0 32 ............................ CTTTATTCTTATTCGCCCGATAGAAAACAATT 5776 28 100.0 32 ............................ TGGGCAAGTTGGTAAAGATGCACTTGCCGTGC 5716 28 100.0 32 ............................ GCTGAAAAAAGCGCAAGCGAACATCGAGAAAA 5656 28 100.0 32 ............................ AAACTGGCTATTTGACGCATTGGAAAAAAAGA 5596 28 100.0 32 ............................ GATGTCTCGGCGGTGCTACAAGCCATACCTTG 5536 28 100.0 32 ............................ TATGGGTAACATGGAACCCTGAAACCGAGGGT 5476 28 100.0 32 ............................ TTTCTCATCTAGCAAAACCGTGACTTGAGCGC 5416 28 100.0 32 ............................ AATGGTGCACCGTTTCGTTGAGCGGTACTGCT 5356 28 92.9 0 ........................A.T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : TTTTATTAGCCAAATTGGACGATTATGTGGATTATGTTGGTGAAACCAGTCTAATCGACTCTCAACAGAAACCGGCTCCGTGTCGGCAGTGACTTGCCTACCGGCAATTGTTGAATTATAAACATCAACAATAAAAGGCAAATCGGTTAATGTGGCATCTTGATAAGTAATCATAGCTTTTGTTATAAGTGATTAAAGTAATTTTATTGTAGTTTTATTATTTGTTTTAGGCAATAAAAGATATTTTTTCAACAAAGAAGATAAAAGCCTATCGTTTGTTATTTTATCAAATAATATTAGGATAATATTGTTTAATAATACTGGATGCTGACCAAATGGGTTGTTATCATCCTACCAAAATCCTTGCCAACCCTTTTTTTTAACAATAAATTAAAGTAAATAAAAACAAATAGTTAAAATGATGCCTAATAAAAGGGTTTTTGAAGATAAAAATCTTATTTGCCTTTTATTAAACAACGTTTATAGTATATTCGATTCTA # Right flank : TTTTTCTTTATTGTTATATAGATCATGTCTGCCTGCTAATATATAACCGTATTTCGCTAATTAAAAAATCAAATAAAATCAATGGTTTTTCTGAACGATTTTTATGTGTAAAATGGACTAATTTTTATATTTATTTTTGTCAGTTAACTCACATTATTTTTAAGTCAATTCATCTTCTCTTTAAATTAGAAAACATAAAATATTGTAATGTTAAATAAATATGTTAATGTGCCTTATGTTGCTTTTTATCTATAAAAGCAATATTTTTTTGTTAAAAATTTTATACAGAAAGTTAAAATAGTCAGTAGAAAGTTATTACGTATTTTTGAAAAAAGCTTTTAATTAAATTTGATGATAGAGGTGAAATTTTTATTAGTATGATTTTATACCATTAAAACAACATAAAGTCGATTTTATACAATATGTTATGCTGTTTTAATGGGACATATTTAATATAATGCGTAAAAATAGCAATTTTGAGTGGCTTAATTACCTATATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 28244-27434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGX01000088.1 Gilliamella apicola strain Fer1-1 Gilliamella_apicola_Fer1-1_contig71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28243 28 100.0 33 ............................ TCTGTCAGAATTCCATTTACAATTGTTTTTGGC 28182 28 100.0 32 ............................ TATTGGTCGTTTAATTGATGCAGATCATACTG 28122 28 100.0 32 ............................ TTACGAAGCTGGCCTGCAGGCTGATGCACCGT 28062 28 100.0 32 ............................ AAAATTCAAGTTCTTCATTTAATCGAGTTTTT 28002 28 100.0 32 ............................ TCTGACAAAACCTGCACGAGGTAAACAATTGC 27942 28 100.0 32 ............................ CGGGGACACGCGCCCACTAAATAGAGGTAACT 27882 28 100.0 32 ............................ CGAGTAAAATCGTGTCATCAGGAATTAATGAT 27822 28 96.4 33 ...........T................ CGCCGGAAACGAAAAAATGACGTATCAGGCATT 27761 28 96.4 32 ...........T................ TTTCAGCAACACATACAGCCCGCCCTTTATAC 27701 28 96.4 32 ...........T................ GTACACCTCCTGCCATTCGTGCAGTTGCGCCG 27641 28 100.0 32 ............................ ATGCGGAGTACCCACCGCACGCCAACATAACC 27581 28 100.0 32 ............................ AGACGTTAAACTAACGCGATGAGCTAATGAAA 27521 28 96.4 32 ...........T................ ATGCTAATATAAATATACGATTCCAACCTAGT 27461 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTTAACGCCGAGTAGGCGGTTTAGAAA # Left flank : ACATCATACCAACTATTCGTTTTTTCATAGTATCTTTAATTAAATTTAATGAGGTTAAATGTTAAATATAGTTCAATTGTATCATGATTACTTAGAATAAAAAAAATAAAAAATTTTTCGTTATTTAAATGGCATTATCTTTGCAAATTTATTAGAATAAGCCTCCTATGACCTCATAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAGTTGCAGGTTCGATTCCTGCTGGGGTCAAAACCCGCCAAACAGACACAGCTTTACATTGATATCCGCAATAAACTTTGATGCTCACTATAAATCAATTAAGTCAATTTTGTTGTACAGTAAAATTTACGCCTTATCAAATCATCTAAAGCTTTATAACCCTTTTTTTGAGCTGTAAAATAAAACAAATAAAAACATTGTGTTAGTGATTTTCTGCAAAAAAGGGTTTTTGGAGACAAAAATCCTATTTGCCTTTTGGCAAACAAAGTTTATAGTATGTTTGTTTCTA # Right flank : ATTGCGGGGGCTCGCACCTCCCAAAATTTATAGCTTAACGCCGTATAGGTGTTTATTTTATATAAAAATAATATCTTAATGATTTATTTTAAAAATTTAATAAAGCAGTAAGCTGATATTTTACAACACTCGAAGATAATTATTGCTATTTATTCAGCGTTGAATAGTGTTGGCGCTCTAGGTTTGTAATTAGCAAATTTTATACTCAAACGCGCATCCACCTAAAAGTTTTTACATTGTGATTTATCGAGTTTTGATAGCGTTACATTTTTAATTACAAAATAACGCTAGCATTAATGTTGAAGATAAAGAAATAGTTAATATTACTCTAACAGTAGAGCTTTGTGCGTATTTTAATTATGTGGCGATGCTCGTTCTTTAGAATAGTTCGTTCATTTTACAATTTTGTCTTAGATTGATGTAGGTTTACCACGAGTTTCCCAATTAAAAATTGCTAACCAGATAGTATTTATTGTTTTTAGTGGTAATTAATTTATTGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : GTTTAACGCCGTGTAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //