Array 1 47268-49804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000003.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 47268 29 100.0 39 ............................. ACTTTTTCTTTTCTCTTGTCTTTTCCGTTCCAGCCCCAG 47336 29 100.0 36 ............................. AGATAATTTAGATACACTAACAAAAAGTGTTAATGA 47401 29 100.0 39 ............................. GGTCGAGTGTGGAATTTCCTAAGCAATACTTATAATAAA 47469 29 100.0 37 ............................. AAGAACAATAAAACACACGAAGAAGAAATATATTCGA 47535 29 100.0 37 ............................. TATTTCTTTTTTAGCTTTATTCTTTAAATCTTTATCT 47601 29 100.0 38 ............................. CTAAGTATCATATACATATATTATTAATAATTATACGC 47668 29 100.0 37 ............................. AGTATAACTTCTGGACTTACATATCCAGCTATCCATA 47734 29 100.0 36 ............................. TGTGGATAACTCTGTGGATAATATTGTGGATAGAAT 47799 29 100.0 37 ............................. ATGACATATGATGGGTTCATGACTAAAATAGGAAGAA 47865 29 100.0 36 ............................. CTAAGTTACTTGATGATATTTCAACTGTACCGCTAT 47930 29 100.0 37 ............................. TGATATGGTATACAATGATAAGAATGATGGAAGATGG 47996 29 100.0 37 ............................. TTTTATGACATCTTTAAAGACAAAATTTGCCATGCTT 48062 29 100.0 37 ............................. AAATAAGTCAATGAGAGCTGTTTACACCGATATAATT 48128 29 100.0 36 ............................. TACAAAGCCGGAAACACAACAGTCAATGGAATAACA 48193 29 100.0 38 ............................. TGCTTTAAGGCTTTCAAGCAAAAGGTCCTGTACTTCCC 48260 29 100.0 37 ............................. GGCTAATGTATTTTAGTACAAGCATTAAAATAAAAAG 48326 29 100.0 37 ............................. AAAACATCTATAAGATCTGTTTTTATATTTTCCCATG 48392 29 100.0 37 ............................. AATAATAGAACTTACACAAAGTATTAACGGGTTTAAA 48458 29 100.0 38 ............................. TTAGGAAGTAAAGTATTAGTAAAAGATACTGGAACAGA 48525 29 100.0 37 ............................. TTTAGAGCAATTAGTTAAATACTTTTCTACTGGAAGA 48591 29 100.0 36 ............................. CTATATGACTTAGTAATATTAGATAAAGAATCAAGT 48656 29 100.0 36 ............................. CTATATTAATAATATCGGAATACGAAAAAAAAATCA 48721 29 100.0 37 ............................. GTTAGAAGTCAGTTAAAAAATACAATACAAGGTAATG 48787 29 100.0 36 ............................. TTGGTGTATTGTAATGATTGTCAGAGTGCAATTAAT 48852 29 100.0 37 ............................. GGAGTAAAAACAAAAGATATAGATGCTGAATTTATAA 48918 29 100.0 37 ............................. GAAGATATACAAACAAAAATAAATACATATAGAGAAT 48984 29 100.0 35 ............................. CAATTAAAGTTATATACCCATTTATTGAACCACTC 49048 29 100.0 37 ............................. AGGAGTTTGATTGTACAATAGCAAATGTACATTACAT 49114 29 100.0 36 ............................. TGAAAGAGAACTTTAAAAAGATGAAAGAATTAATAT 49179 29 100.0 37 ............................. AATTTATATGCTTTCTTTTTAAGTAGATCATAATCAT 49245 29 100.0 37 ............................. TCTAATGTTACTGATTTTGAATGTAGTATGTATTTTT 49311 29 100.0 37 ............................. TTGTCGTTTTAGCTTCAGGTACACTAAAATCTTTATC 49377 29 100.0 37 ............................. GTCATGTTGATTGTCCCTGTCACTCTTACACACTATC 49443 29 100.0 39 ............................. CGCAATCTTTCATTTCAGCTTGTATTTCTTGTTCTATAG 49511 29 100.0 37 ............................. AAGGGAACTTCTTTAAAAATAACAGATATTAGCAGTG 49577 29 100.0 37 ............................. AACTTATTTAACGGGTATAGATTGGCAACAAGCTACA 49643 29 100.0 38 ............................. TATTATTGGTCTAACTAATTCTTTTAAAGCTACATTAA 49710 29 100.0 37 ............................. TTGTCAAAGAATCCTCCCATGTCTAGTTCGTAAATCT 49776 29 89.7 0 .......................TAA... | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 99.7 37 GTTTTATATAAACTATGTGATATGTGAAT # Left flank : AGGGAAGGCATTAGTGTAAAATATGTAGATCCTGCCTATACTTCACAAACATGTAGTAAATGTGGTCATGTGGACAAAGAAAATAGAACCAGCCAAGAAAAATTTAAGTGTATTGAATGTGGATTTGAATTAAATGCTGATCATAATGCTGCGATTAATATAGCTAGAAGTAATAATTATGTAAAATAAAATAAAAAAATATGTAGTCGATTCAGCGACTAAAGGTTGAGGATATAGGATTAATAGCTAGGATAACCTAAAGCTATCTATAATCACTCGATAAGGGTTAACTCTAGATGTTGTGTTACCGTCTAGACATACATATAGTTTATTTATATAAATTGCAGTGGGCGATATTTGCATATTAATATAGTGGAGAGCTTGGAATAACTAGTCTTGAAGTGTTTTATAAAGTCATATAAAAAACACTACTGGAGGTTCACTGCAAAATTAGTTGATATATGACACTCAAATCATTGAAATTACTATATATTTAGTTG # Right flank : TTTTTTATTTATAATAACCAAGATAGGAGGAATATATATGAAAAAAATAAAACAAATTGTATCATTTATACTGATTTTTAGTATTACTTTCTCAACTATTTTCATGTTAGATACAAAAGATACATATGCAGCATCTATAAAATATGTTGATAATGCTAGAAGTGGAATAACTTATTCCTATGATTTAGACAAAGATGGTAAAAAGGAAAAAATACTTTGCTTAATAGGAAATGATGAATATGGTTATACACTAGATTTATACATAAATAATAAATTAAAAAAGACTTATTCAAATTTAGAAGCTATACCTTGCGTATCAATTTATGATATAAATAAAAAAGATAAATCATTAGATATTTATGTAGAATTGGTACACGAAAGTATGTACTGTGATTTTGAAATATTAAAATACAATAAAGGAACTATAAAATCGTATACTTTTGATGATAGAATAAGTAGTTTTGATAGCGATAAAGGAATAATGAAATTATCTCAAGTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATAAACTATGTGATATGTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 19-3164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000023.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 100.0 36 ..................................... TCCATTGTATGTACATTCATAATACATTCCGTCGAA 92 37 100.0 37 ..................................... GCTCAGCTCTAAAACTCCAAAATAATGCAAGAAGAAA 166 37 100.0 38 ..................................... AGCTGGTTAGATGTAGGAGAAGAAATAGGTTACTCAGA 241 37 100.0 37 ..................................... CTTTATCGTTTTTATCTAATATCCAGGGGTAATACCC 315 37 100.0 39 ..................................... ATTTACCATTAACTTTTGTTCCATTTGCAACTACGTTGT 391 37 100.0 36 ..................................... CGGAACTCTAGAAAGTTATTTAAGAACTAAGTTTGC 464 37 100.0 38 ..................................... AAATTTTTAGGTCCTGCTTTACAAATTAGATATTTACT 539 37 100.0 37 ..................................... GAATATTACATCTTACAACAGGTGGAGATACTGCAAA 613 37 100.0 38 ..................................... TTTTACATCTGGACTAAAAAATACTTCATTATTTATTC 688 37 100.0 37 ..................................... ATAGAATCTACTCTAATTCCATTATTGTAGTTGTTAC 762 37 100.0 37 ..................................... TTTTAGTCTTCCCCCTTTACGTTTCAAACTAAAAAAG 836 37 100.0 37 ..................................... TCAATGATATCTCCACTTTTACCACAACCAAAACATT 910 37 100.0 37 ..................................... ATTCATAGGATACACAGATTGGAATCAGATATCTATA 984 37 100.0 36 ..................................... AATAGAAGAAACATGGATATATAAAAAATAATATAG 1057 37 100.0 37 ..................................... CATTTACCTGTAACTGTACAAGGTGCTCCAGCATTTT 1131 37 100.0 38 ..................................... CAAAATGGGGTTAATTAATCTCTTAGAAGAAGGTCGAA 1206 37 100.0 36 ..................................... ATCTTTATTTTTATTATTCATATCATTAATAAATAT 1279 37 100.0 37 ..................................... AGAACAACTTTTGTTATAGTCTTGCCTTGTAATTTAC 1353 37 100.0 38 ..................................... TTTCAAAACTTCAATCGGAACATATTCCTAATTAACAA 1428 37 100.0 37 ..................................... TGGGGAGGAAACAATACAGAAGAAATAAGAGAAATAA 1502 37 100.0 38 ..................................... CCAGAATACAGATTAGAAGAATCTGAAAAAAAATGGGC 1577 37 100.0 37 ..................................... TATCTTTTTTATCCTTTTTATCTTCTGAATCTTTTAT 1651 37 100.0 37 ..................................... AAGAAGTATTGCAACAAGCAAGGAGGCTTTGTTCATG 1725 37 100.0 36 ..................................... AGATATAAATTATGATGAATTATCATTTTGTAAGTA 1798 37 100.0 37 ..................................... GTAAATCTATCAGTTAAATTTTCAATAAAACTATCAA 1872 37 100.0 36 ..................................... TGGGAAAGGAAAAGTAACAGTTATACCTACTACTGC 1945 37 100.0 36 ..................................... ATGAAAAACTTAAATGGATGAGGTATGATACATATT 2018 37 100.0 37 ..................................... ATAGATTAGCTGGTGCTCCGATTTCAAAAGTGGAAAC 2092 37 100.0 37 ..................................... TAACAGAGTTAGAACTATCTTTTACAGATTGGGAAAA 2166 37 100.0 37 ..................................... TATTTTACATTTACGAGAAAAAGCAGTTATTTTAGAA 2240 37 100.0 36 ..................................... CTGAATCCAATAATAATGAAGTCGATATAGATAAGT 2313 37 100.0 38 ..................................... CCAAGCAGTAAAACTTGTTCTAATTGTGGTCATATTAA 2388 37 100.0 35 ..................................... AAAAGGAGGGGGGATAATATGAATTTAACAGAAAA 2460 37 100.0 36 ..................................... TTTTAGGAATTGATGATACTCTAGCAGATGTATTTT 2533 37 100.0 37 ..................................... GGATAAATCTAAATTTTCTGTATTGCTCTGCCATATG 2607 37 100.0 40 ..................................... AAAGTTACTGCTGGTGGAGCTTATACTGTAGTAGAAACTA 2684 37 100.0 37 ..................................... TGGAGAAATGAATTCTCTAGCCTTTAATGTGTTATAA 2758 37 100.0 38 ..................................... AAATTGCGAATTTGATGATGTTGAAAAACAACAATCAT 2833 37 100.0 37 ..................................... TACTTGGCAAGTTTTGTATTGCACTTATAACATTTTT 2907 37 100.0 37 ..................................... AGACAGATTAGAAAAATAGAAAATGCATTGGAGTTAT 2981 37 100.0 36 ..................................... CCACCCAAGAGACACATTTGAACTACCATCTGCTTT 3054 37 100.0 37 ..................................... TTTATTTTCAGAAAGGATTTGATAATATGACAATAAG 3128 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 100.0 37 GTTTTAATCCTTGTTTTAATGGAACTTACTCTTTAAC # Left flank : AGCATCTTCAGAAGTAGAG # Right flank : CACGTAGAACCTAAAACCATTGGAATTACTGATTTTCAATGTGTTGCTTTATTTTCATCTAACCTCAAAACAATGATTTTCCATTAAAAAAATGCATTTTTTAGCTTATTAACATCTATCTCAAACCAAGTAATTCCAACACATTCAATTGTCAAAGTTCAAAGTTTCCAATAATTTTGTAGGAACAAAACTATTAAAAATCTTTTTTATATCTTTTTTACAGTTCCAAATCCTCTCGATATTCCTTTACCTATTGCAAAATTATCTGGTATTTCAAAGTTTATAAAAAACTCTCCTATAAAAGCTAACATTTCTTTTTGTTTAAATTTAACATCTATTTGATTTAAGTCTAACTTTACTTTTATAGTTTCGTCAACTGTATAATCCATTCCTTTTGAAAAAGACAAAATATTTCCTATAAGTACTCTTTTTAGTATTTCTTCTTTTTCTATTAAATCTGCTGCTGTATATTTTTTAATATTATTTTGATTTAAAGCTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTAATGGAACTTACTCTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 9733-15312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000023.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================== ================== 9733 35 86.5 9 A.......................-..-..A.A.... ATCGATTAA A [9764] Deletion [9777] 9778 37 94.6 56 ..................C.....T............ TTTAAAAAAGTGTAACACTTGTAATAACAAAAATCAATATATGATATATGATTTAA 9871 37 94.6 37 ........AT........................... TAAAAGATGAAAAGATTTATAATGAACAGTTTATTTT 9945 37 100.0 37 ..................................... TCAAGCTTTTAAGAACTTGATAGAAAAATAAGTAATA 10019 37 100.0 37 ..................................... ACAGCAAATACGGAATAAGGGATCAAGCAAGAGTAAT 10093 37 100.0 37 ..................................... AAGTTCCCTCTTTCAGTACATATTTCTATCCCTCTTT 10167 37 100.0 37 ..................................... TATTTTGAATATAACTGTCCGAAAGTTTATGTTGGAT 10241 37 100.0 36 ..................................... AGTTCTTGATTTATTTAATCCAAGAATAACTCCAAT 10314 37 100.0 37 ..................................... GTAAATCTATTTCAAATAATGCTTTTTCTTCGTTTAA 10388 37 100.0 37 ..................................... AAAGCAGACCAGAAGGGGTATTTATATTACCTTATAT 10462 37 100.0 37 ..................................... GTTTGCCTTATATTGTTTTAGCAGTGGTTTATACTCA 10536 37 100.0 37 ..................................... TAGTAGAATCTATGGATAATGCTAGTGGTAAAGTTGA 10610 37 100.0 37 ..................................... GTAACCTATTTGACTAGTATAATTGCTACAGTTTTTT 10684 37 100.0 37 ..................................... TAAACTCAGGCCTTGAAAAAAGTAAAACATCAACATC 10758 37 100.0 39 ..................................... CAAATCCTCCATCAGTTTGTCCAGATGTTTTACCATCAT 10834 37 100.0 37 ..................................... CTACTGGAGTTAATAGTTTAGTTGCTTCTGCATAAGT 10908 37 100.0 37 ..................................... AAGCATTTAAGGGCATGTCAGACGAACAAATAAAAGC 10982 37 100.0 37 ..................................... TCATATTATCAAATCCTTTCTGAAAATAAAAGATGCT 11056 37 100.0 37 ..................................... GAGAACTCATTTCTCCAAATACTTTACCAACACCACC 11130 37 100.0 37 ..................................... TCATATTCTCCATTATTATAATTTAATAATCTTTCTT 11204 37 100.0 36 ..................................... GATTTTTTCTTTTGAAAATTTACCATCAGGGATAGC 11277 37 100.0 37 ..................................... TTAAATACAGCTACAGAAACTATGACTTTCAGTAGTA 11351 37 100.0 36 ..................................... ACCTTTATTGCTTTTATATAAGAAATTAGGCATTCC 11424 37 100.0 38 ..................................... ATAAATCATCTAATCACTCCCTTCTTAATTTATTTGCA 11499 37 100.0 38 ..................................... TTAATTGCAGCAGAATTATTAGTGTATGGTGCAACTAA 11574 37 100.0 37 ..................................... TATATTCGAAAGTATAATAATTTTCATCATCTTCAGA 11648 37 100.0 39 ..................................... ACTACTCAACATAGTTCATATCTGCAATATATGTTTCCA 11724 37 100.0 35 ..................................... TTATTTATCTTTAAGTTATTAAGAAATTTTTCAAT 11796 37 100.0 38 ..................................... GAATTTTATTTATATAAAAAATAATAATTTATATAATA 11871 37 100.0 37 ..................................... AATAATAAAAAAGTTTTAGTCATAAATCCTCAAACCT 11945 37 100.0 37 ..................................... TGCTAGCTAATAAAACAAATACAGTAGGATTTAAGGG 12019 37 100.0 37 ..................................... CTTTTTGTATGAGCTTAGCAGTCTCATCATAAGTAAT 12093 37 100.0 36 ..................................... CTCAGCAGGTGCGACTGATTATTGGGACTCAAACGT 12166 37 100.0 36 ..................................... TACGTTTTAGAGAGTTTTCTATCTTGTCTCCATAAT 12239 37 100.0 36 ..................................... AAGGACTAGAATAATTCTAGCCCTTTTTTATTTTGA 12312 37 100.0 36 ..................................... TATAGGACTAGAAGTTGTTGCCTTTTGTCTTAAGTT 12385 37 100.0 38 ..................................... TTCTAACCATTTTAGATCTTCTTTAAGTTGAGTTTTAC 12460 37 100.0 35 ..................................... TCTTTTTGGCCTATTGCTGTATAAGGGGCTCTTCC 12532 37 100.0 37 ..................................... CTAATAAGGCAAATATAGATAATATTGATATAGCAAA 12606 37 100.0 38 ..................................... TCAGAACAAGGTACAATAGACGGCAATAAATATGTATA 12681 37 100.0 37 ..................................... CTCGACTTATATCATGCTTATAGACAAGCATATATAC 12755 37 100.0 38 ..................................... AGGTAAATTTGAAGATGGGACAGAGCTCATAGCTGAGC 12830 37 100.0 37 ..................................... CAAGATATTCTCTTATTTTAGAAATGTCTTCATCTGT 12904 37 100.0 37 ..................................... ACATTGATTTATATCCTTCCTTTTCCATTAACTCTTT 12978 37 100.0 38 ..................................... ACAGAAGAAATAAGAGAAATAATAAATTATTGTTTTTT 13053 37 100.0 37 ..................................... TGTGTAAAGAACGAAATGGAAAGAAATTTGACAAAGA 13127 37 100.0 36 ..................................... AAAGTTTGTAACTGGAATAGCATCTTCATCTATAAA 13200 37 100.0 37 ..................................... AAAACTAGGAAAGCTAGTAAAAAAGCTAATTCTAGAT 13274 37 100.0 39 ..................................... AGTGCAAGAGAAAAAACAAAAAGCTATTGATTTATTACA 13350 37 100.0 37 ..................................... TTGACTTTAACTAAGGAGGATTAGAAATGGAAGATAA 13424 37 100.0 38 ..................................... CAAAATAAAAAATATAATCAAATTTCCAATACTGTAAA 13499 37 100.0 38 ..................................... CTCCTCCATGTGATACAGGTTCGAATCCTGTGGCTTGC 13574 37 100.0 36 ..................................... ATTTTTAAACTCTGCTAATACGACTTTGTTTTCAAC 13647 37 100.0 36 ..................................... ACATCCATCTTCATTATCTAAACTATCTATTTCTAC 13720 37 100.0 37 ..................................... CAATTCTTTAAGATAGATAAAAATTGCTACAAATCGA 13794 37 100.0 38 ..................................... ATTGTTCAAAAATGTCCAAGTAAAAATAAAGTTGTATT 13869 37 100.0 38 ..................................... AGATAAGGTTAATTACGGTTGTATTGCATGGAAAGAAT 13944 37 100.0 37 ..................................... CAAACATAATGTTATTAAAAAGTGTTCATTTACTTTT 14018 37 100.0 38 ..................................... TATTCCTTCTCTTAATAGTTCTTATAGCTTAATATTAT 14093 37 100.0 37 ..................................... CTGATGAAACTCTAATAATTGAAGCAGGTATCAAATA 14167 37 100.0 36 ..................................... TACTTTTTTATTGATAGAGTAGTAGTTGTTATTCAT 14240 37 100.0 37 ..................................... GTTACGGAGAAATTAGATATTGGGAATTTGAAGAAAT 14314 37 100.0 37 ..................................... CCGAAACAGAAAAGATTAATTAATAGAAAAAATGATT 14388 37 100.0 36 ..................................... GAAATATAGAAATAGGAATGGTTATTTCTGATTTAT 14461 37 100.0 37 ..................................... CTTCTTCACTAAATAATTCTTTTTCTGATTTTTCCAC 14535 37 100.0 36 ..................................... GTTTTCAGATGCACTTACAGAATTAGCAGAACAAAA 14608 37 100.0 38 ..................................... CTTTGCGAAATGGTAGGTATTCCAGAAGAAGCAGAAGA 14683 37 100.0 36 ..................................... TCCAATAAGGTGGGATTACTGGCATTTTTTTTAGAT 14756 37 100.0 37 ..................................... TCGTTTACGTTCGTAATATCTACGTTTTGTTTTTCGC 14830 37 100.0 38 ..................................... TCTCCGAAAGGAAGGTGTCCAGAGATGGAAAATAAAAT 14905 37 100.0 36 ..................................... TATTCCTAATAAAAAAAGCCAGATTTCTCTGACTTT 14978 37 100.0 37 ..................................... GGATCAACAGAATCTCCATTTCCCCCACCACTAGGAT 15052 37 100.0 37 ..................................... CAGAGAGCAACTGGAAGAACTTGATGAAAGATACAAT 15126 37 100.0 38 ..................................... ATTGGCTATGAAAGAGGGTGATTCCAATGTGGACTTAA 15201 37 100.0 38 ..................................... TCCACCAGCGGTAACTTTACCTACCACACTGCTTGAAT 15276 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================== ================== 76 37 99.7 37 GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Left flank : TTTGTGATTATAATAAAATACGATTGATTTGCATCTTTTTGAACTTCCTCGATTATATTTACCCAAACTTCATCTAGATAACTTTTGTCTATTTCCATAAACTCTAAAGAACTTGCTAATTTTTTTTCTTTTATCTTTGCTGCATCTTTATCTTTATATTTTTCTATTTTTATTCCTGCCCCAACATGTCCATTTCCTTGTTGATAAATTAATGCGTCTTTATAAACATCTTTGTAAAAACTTCTTAACTCCTTGGTGACTTTTCTTTCTCCTTCATCTATATTTATGAAGATCACATTATCCATCGGTTTCGTGTCTTTAGTCCATAATTCAACTAAATCCTTCTCACCATCTATAATTCTCACTTCATGACCTATATTTTTTATTTGCTCTATCAAATAATCACCTCCTGCAAAGGATATTAATAATTACATATATTAATAAAACCTTATATTTAGATAATAGTCCTATTGTTATTATATGTCAATAAATGTTTTTAA # Right flank : ATAGATTAGCTGGTGCTCCGATTTCAAAAGTGGAAACGTTTTAATCCTTGTTTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 38-962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000004.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 100.0 37 ..................................... AATATTCTTTAATATTTATCCATTTATTTAATTGATA 112 37 100.0 36 ..................................... ATGTTAAACGATTCACCCTTGGGAGGTGTCACGCAC 185 37 100.0 37 ..................................... TATTGAATGCATATTCTTGCCATTCATATATTTTATT 259 37 100.0 36 ..................................... AGTAGTAGAAGCATGGAGAGGGTTTTAATCCTTGTT 332 37 100.0 37 ..................................... GTCAGCATGCCTTTACACTGCTCACACAATGCTATCC 406 37 100.0 38 ..................................... ACAAGGATTAATTGATATTTCAGATGAAGGTATAAGAA 481 37 100.0 37 ..................................... AGTTCAATAAAAGAAGAAATAGACATAACAAATTTTA 555 37 100.0 37 ..................................... CAATTAATTTAGAGGAAGAAATTGGAATTATAAAAGT 629 37 100.0 38 ..................................... ATAGCTTCTTTTTGCTTATCTGAGATATCTTCTAAAGG 704 37 100.0 36 ..................................... GGTGTAAATCCTTGCTCTTGGCTTGCATATACCTCA 777 37 100.0 38 ..................................... ACTTCTCCACTTAATATCTTACATTTATCAGTTACCTT 852 37 100.0 37 ..................................... CTATTTGAGTTGGAGTTAATAGTGTTTTTTTATCTTC 926 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 37 GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Left flank : ATAGATTAGCTGGTGCTCCGATTTCAAAAGTGGAAACG # Right flank : CTCGTAACACCTAAACACATTGAAATAACTAGTTTGTAGCGATTATATAATTTTTAAACTTATTAAAAACCATCTTGTTTTTAAATAAAATAAGTCAATTTTTTGTTATCAACACCAACTCCAAATCAAGTTATATCAATGGATACATAGATTAGGATTATATTTTTTAAATAATTTTACAATAACAAACAAAATTATTAATCAAAAAAACTTTTGAAAATTTTTATATCTAATTATAGAGTATCATACTATTTATAAAAAATACACAGATTTTTTATAAATAGATTTAGCTAAATCATATTTTAATAAAGTATGTATATATATCAATAAATTTGAAAATAATTCAGCTAAGTAAGAGTCAAGAGTCCTTATCGTAAGTATCTATATTTTCCTTTTTTAATAAATAACTCAACGTACTCTTGCCTGGATTTTACCTAGCTGTATATCTTTTATTAAAATTTTAACCTTTATTTGTATTACCTGCATTTTATTTCCCCCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTATTGGAACTTATTCTTTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 179115-182043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000007.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 179115 37 94.6 36 TA................................... TGATAAAACAGGAAAGAAATATAAAAAATTAAGTAA 179188 37 100.0 37 ..................................... ACCATAGCCCCATAGATTGCTCTAACAGCATTGTTAT 179262 37 100.0 38 ..................................... TAAAACATCTTTCATTTCACATATCTCCTTTTTCAAAA 179337 37 100.0 36 ..................................... CCCAATGTTTGCCTCGTTTAGGAGCATGTTGATAGT 179410 37 100.0 37 ..................................... GTCATGATTTAAAAGAAATAATATTACCTAATTCACT 179484 37 100.0 37 ..................................... AATAATTTATAGTATATGAAGTCATAGGTTCTCCTAT 179558 37 100.0 37 ..................................... GAAATAGAAGAAGAATCTTTTGTATATTGTAAAAACT 179632 37 100.0 37 ..................................... ATTATACATTATAATTTTATTTATTTTTCAAAAAAAA 179706 37 100.0 38 ..................................... AAAACATCAGGAGATTGGAAAAGAAAAATATCTGGAGC 179781 37 100.0 37 ..................................... AAATAATAAATGAATTTTTAAAAAGTAAAAATAAGTA 179855 37 100.0 37 ..................................... GAAGTAATATGTTATCAAAAGCACAAGAAACAGGTAG 179929 37 100.0 36 ..................................... ATCAGCTATTGTAGGCTCGCCTTTTAGGAAATCGTC 180002 37 100.0 39 ..................................... ACATAAATTTCTCCATCCAGGAAGGTAATGTTTTAATAA 180078 37 100.0 37 ..................................... GGAGGTAATAAGATGAAATTTAATATCAAAGAACAAA 180152 37 100.0 39 ..................................... AAGGACAACTTTTTAGGATAGATACAATATCAAAACCTC 180228 37 100.0 38 ..................................... TTTTTCCATAGCATTAAATTGTTTTATGTAAGCTTCTT 180303 37 100.0 36 ..................................... TAGAAACATGAGAATGTCTTAATGCATGTAGCTTTT 180376 37 100.0 36 ..................................... TTCTTCACTATCTTTTTTACTTGCATCAACATCAGT 180449 37 100.0 36 ..................................... TTGAAGGATCTACTTTTTTACATGAAGTAAATTTTC 180522 37 100.0 38 ..................................... AAATTTTGTTTATCCATATGTGAAAAATTAACTAGATA 180597 37 100.0 36 ..................................... TTGAAGGATCTACTTTTTTACATGAAGTAAATTTTC 180670 37 100.0 38 ..................................... AAATTTTGTTTATCCATATGTGAAAAATTAACTAGATA 180745 37 100.0 37 ..................................... CATAGATAGGAGAAACTTATGAGAGAACAAAGAAATT 180819 37 100.0 37 ..................................... TCTGTCTGTGTATAGTCTTTTTCTTCTGTCTTATCTA 180893 37 100.0 39 ..................................... CTAATGACAAATCAGTTGGTTGTTGGTTCGCAATATCTT 180969 37 100.0 36 ..................................... TTGGTGCTTTTTTTCTGTTAGAGAAATATCTAAAAC 181042 37 100.0 39 ..................................... AAAATCTTTTTGCATGTTCTAAGACTTCATCCTTTGTCA 181118 37 100.0 38 ..................................... AGAATAGGAGCTTTAAAACAATATGAGGGAGTTATAAC 181193 37 100.0 36 ..................................... TTCATTATTATTGGATTCAGCATCTTCAGAAGTAGA 181266 37 100.0 37 ..................................... CCGTAATCCAATTGAGTTTTAAAAATAACATGGATGA 181340 37 100.0 36 ..................................... ATAATCTGTATAGACAGTTCCAACATGTAATTCTTT 181413 37 100.0 37 ..................................... GTATAGATCAAGAAGAAAATAGTTTACTTGGAAAAGC 181487 37 100.0 40 ..................................... GAAAGTACAAAATGTGATAATGGGGTAAGAATAATAGCTC 181564 37 100.0 37 ..................................... GAAATAAAAACAACTTTAATGATGCAAAATTAGGTAT 181638 37 100.0 37 ..................................... GAAAAGAAAATTTGCTTATATTACATAAAAAAAATAA 181712 37 100.0 36 ..................................... ATTCTTTGTATTATCTTCTGTTGTTCTTGCTTTAGC 181785 37 100.0 39 ..................................... ATGAAGAAATACAAGAGTATACATATAGAGAAGAAGCTA 181861 37 100.0 36 ..................................... TAAGAAAAATCCAGCATAAAAAGCTGTCAATATTTT 181934 37 100.0 36 ..................................... TTCATTATTATTGGATTCAGCATCTTCAGAAGTAGA 182007 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 40 37 99.9 37 GTTTTAATCCTTGTTTTAATGGAACTTACTCTTTAAC # Left flank : TTATTTCAATTTTTCTATTATCTCTTCTATTCATAGATAATTCATTTAAAAATTCAACCTGATTAGTCATCTTTTGAGTCAAAAACTCTTTTACTAAAATTGTACCCATTTTATTAGAATCTAAATTTAACTGTCTTTTTCTAATAGTACTTATGCTACCAACTTTAGAATGCCATACTCTTCCAAAAGGTTTTCCATACTTTTTTAAAAACACTATATCAATATTATTCTCAACAGCTAACTCAATAGCATCAGTAGACAAAGCTGTAGATGTCGTTATAATTATTTGTTCAACCTTCTTAGCAGCAATTTCTTGTTTCTGCCCCTCTTTTTTCAAACAAAAACATTCGCCTACTTTAGTCAAATATACTCCTTCCGAATTAACAACTAGCTTCATAGCTTAATATCACCTTCTTTAGTTTTTATATTACTTAATTTTATTATTTCTGCTAGTATATGACAAATTCCTTCTTAAACATCAATATATTTTTCATTTTTGA # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCCTTGTTTTAATGGAACTTACTCTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 80645-78770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000005.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 80644 29 100.0 37 ............................. AATGGTAAATTGAACGAACCGCAAGTTTTACCCAAAT 80578 29 100.0 37 ............................. ATGAAATAGACACAAAAAAAACTACAAAAGCTAGTAA 80512 29 100.0 37 ............................. AAAGTGAAAAATTGCATTTTAAAAGAAATTGAAAAGA 80446 29 100.0 37 ............................. TCTGCTATAGCATTTCGAATAGCATCAGGAAGTGTTA 80380 29 100.0 37 ............................. TCTATATATCTAGATGATTTTACTCCTATTTCATCAA 80314 29 100.0 37 ............................. CTTGATGAACTACTTAAAAACGCTTCTGGATTTACTA 80248 29 100.0 36 ............................. ATATTAGAAGAAGGTAATAATAATATAACTTGGTCC 80183 29 100.0 37 ............................. GCATTAATTACATCAGCATTTAGGGAGCCTATAAGAG 80117 29 100.0 37 ............................. AAGCTTCTTAGAGATAACTTTGCAATATCAGTACTTA 80051 29 100.0 36 ............................. TGTATCTTTATATGTTTTGCATGTTTTTGCTTTTTC 79986 29 100.0 37 ............................. TTTTACAGTCTAACTCTTAGAACAGACCTTTACAGAA 79920 29 100.0 37 ............................. ACATCACTTCTTAATCTATCTATTTCAACGCCTTCTC 79854 29 100.0 37 ............................. TTAAATGGGCAAGTAACAGTATATGCAAAACATATTT 79788 29 100.0 37 ............................. AAGCAATACTTATAATAAAACAACTCAATGGGCATCA 79722 29 100.0 36 ............................. TCTTATAGTATAATAACTGTAAAGGGGGTGAAAAAG 79657 29 100.0 36 ............................. ATATTTTTACATCCAGTAGTAGAACAATACAAGAAA 79592 29 100.0 37 ............................. ACAGGTAACGGAGAAGGAACAGACATATTAAGTCTTA 79526 29 100.0 37 ............................. ATGAATGGTTTAACTGATGAAGAAATATTAGAAAAAA 79460 29 100.0 37 ............................. GTATTATTTTCTATTAGTCTTAACATAGTTGCTACAC 79394 29 100.0 37 ............................. ATAGTAACAAAATAAACAATAAACTTTCTAGCATGGA 79328 29 100.0 37 ............................. ACTTATTTGTCATGGTCCAAAACTGCTAATCTTACAA 79262 29 100.0 37 ............................. GCAGTAAAGAAAAACGAAGATAAGCTAGATAAAGAAT 79196 29 100.0 36 ............................. CATACTAAAAAACTACTTTTAGAATATGCAAATAAA 79131 29 100.0 37 ............................. TTATTAATAAAAAGTTGTAGAGGTAAAAAAATGACAA 79065 29 100.0 38 ............................. TTTACCATACTTATACATACAGATGGTACTGCTCAATC 78998 29 100.0 38 ............................. CTAAATCAAGACTTTATAGAAAATCCAATAGCATTTAA 78931 29 96.6 37 .......................A..... CTCATGCACATCATGTTTATAAAAATCGTGGGAATCA 78865 29 100.0 37 ............................. TTTGAAAATGATGAAAAAATATATAATTGTGATGAAA 78799 29 96.6 0 .......................C..... | T [78772] ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.8 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AACATTTTATAGGTGATGAAAAATATAAAGTATTGAAAGCATGGTGGTAAAATGTTTGTTATTATTACATATGATATTGCAGAGGCTAAAATATTGAATAAAGTAAGGAAGACTTTAAAGAAATACTTAATTTGGACTCAAAATTCTGTATTTGAAGGAGAAATACTTCCAGGAAAATTACATAAATGTGTGAGTGAACTCGAAAATATTATAGATAATGAAGAGGATTCGATTTATATTTATGAGATAAAAAATAGTAAAAATATACAAAAAAATATATATGGAATTCATAAGAATTTTGATGATACATTTATATAAATTGCAGTGGGCGATTTTTTAATAAAAATACTTCCAAAGTATTGATATTACTTTGTTGGAGATCGGTTTATATAAAAACAAAAAAACACTACTTGACCTTCACTGCAAAATTCAATATATTGATATATTTTTTATTGCTATGATATAGTAATATCAAGGGATATAAAAAATTATTTTTTGGG # Right flank : CAATTTATAAAATAAATACTATATATTAAGGGGAAAGAAATATTATGACAAGAGTAGATATGTTTTATTTAATATTAGTTGTAATTATTGCTATAGCGTGCTTGTTTTGGAAATTGGGTCCTAACTTCTTTGTGAAAAGATTAAATAAAAAAAGTATTTATTGTGAGTATTATTTTATTTTCAACTATTTTAATTGTTGTTACATGTGCATTAAAAATAGAATTTAGAAAATCCTTATGGAGTTATTAGAAAATAAGAATTAAAAAATAAATAAGTTTTTCACAAATATTGTATTATAATATTTTTAGAACACAGTATATATGTGAATCAAAAACAAGGGGGATAACACAATGATACTAGATACTAATAAAATTGAAGAAAAAGCATTGGCAAATTTTAAAGGTGGAGAAAAGGCATTAAATGCAAGAATGCATGTAGACGAAAATAATAAAATAATCTTTGGAAGATTAGAACCAGGGGCATCAATAGGGGAACATACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 93690-91066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMD010000005.1 Intestinibacter bartlettii strain MSK.17.25 MAPONFPG_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 93689 29 72.4 6 ...A....A...A.C.AA..A..T..... AAAGGG C [93682] Deletion [93655] 93653 29 100.0 37 ............................. ATGTAAGCATATTGTGGAACTGTTATAGTATTTCCTG 93587 29 100.0 37 ............................. TTACTTGGATTAAATGTATTAATAGCTTTTGCTAATC 93521 29 100.0 37 ............................. ATATTATTATTTTAGAATTATATATTGATTTTTGTTT 93455 29 100.0 37 ............................. ATCCATCTTCCTTATATTCTTCAGTTTGACTAAGTGG 93389 29 100.0 37 ............................. TAGAAAAAGACGATGTAAAAGTAAGTACATTCTTATT 93323 29 100.0 37 ............................. TCGTATATGTCATATAGTCTTAGTATATCGTTCATTT 93257 29 100.0 36 ............................. TCATTAATAAAAACAGAAAAGAAAAATGGATTTTAG 93192 29 100.0 36 ............................. TTAAACAAGAAATGAAAATTTTTGGCATCAAATTAG 93127 29 100.0 37 ............................. AGTTATAATGCAGATACTGAATATCTAGTAATAACAG 93061 29 100.0 37 ............................. AAGTTTGTATCTGACATTATTTACCCTCCTTTCTTTG 92995 29 100.0 37 ............................. GGAGAAAGAAGGAATAGAAGAAGTATTAGAAAAATTA 92929 29 100.0 37 ............................. ATTTTAGATACATCAGGAATAGCATTTGAAGTAGAAC 92863 29 100.0 36 ............................. TATTTTTCTACTATTTCTCTTGTCATTTTGTGAGCT 92798 29 100.0 37 ............................. GAGTAAATATAGCATAATCTTTTTTATAATCTTCTAA 92732 29 100.0 37 ............................. GTTAAAAGGCTAATCATTATAGATATTGAATCTCTTA 92666 29 100.0 36 ............................. AATTTCGATAAGTCTGTAGGATCTAAGAAAATATAT 92601 29 100.0 36 ............................. CCAAGACTTTCATTTTGTTTACAGAAGTTTCATTTA 92536 29 100.0 37 ............................. GGGGAAAAGATGGAGATTATACATAAAGTATATCAAA 92470 29 100.0 37 ............................. AGTTTTATATACATTTGATAATTTTAAAAAAGCATTA 92404 29 100.0 37 ............................. TATATAGAAAGTAAGGATTACACTTCTATATTGGCAG 92338 29 100.0 37 ............................. GGAGGAAGGGGAAGAATAATGAGAAGACATAAAGTCA 92272 29 100.0 36 ............................. GATCATAAAATTACAATACAGGGTTTATCTACTCAA 92207 29 100.0 37 ............................. CTATAAAAATAAACAACTTAAACTCAAAGAACTTCAT 92141 29 100.0 36 ............................. TATAGACAATAAAAATGTAAGAAGCAGAGATAAGGG 92076 29 100.0 36 ............................. TTTATTGGTGGGGTAAAAGGGGGATAACAAATGAAA 92011 29 100.0 36 ............................. TTCTTTGTATTTCGTTCTGTTTCGTCATATTATATA 91946 29 100.0 37 ............................. GATAAACTCATTGAATATTTAACTAAATCTTCATATG 91880 29 100.0 37 ............................. TATTACACTCTTGAAAGTCATTGTATTCTAATATATT 91814 29 100.0 38 ............................. TTAAAATTTTCCATTGCCCATAAAGCGAAGCTTAATGA 91747 29 100.0 37 ............................. TCATGGGGAGGCTACTGGTGTTGGAACGATGATAAGA 91681 29 100.0 36 ............................. GTAATATAAACTAATTCTAGCAACGAGGAATCTTCT 91616 29 100.0 36 ............................. ATAAAAACATGGAGGAAGGTTTTGATTTACTGAAAC 91551 29 100.0 36 ............................. TCTTTTTCTGGTACAAAGCAAAATCCACAATTTCTT 91486 29 100.0 37 ............................. GTGATCGACAAGACAGATATGAATGAAGTGTACATAA 91420 29 100.0 37 ............................. TTATATGGAAAATCTTCTTCATAAATAGAATATTTAT 91354 29 100.0 35 ............................. ATTTTTCCCCATAAATTTCCTAATTCAAGTTCTCT 91290 29 100.0 36 ............................. AAAAAAGAAAAGGAGGCGCGAGAAAATGCGCAAAAA 91225 29 96.6 36 ............................A CGTATAATTGGAGCCCACGCATCAACAAAACCAAAA 91160 29 93.1 37 ................A...........A TATTTTAGGTATAAGTGAAGATTTATTTTGGAATATA 91094 29 79.3 0 T...........GC.T........CG... | ========== ====== ====== ====== ============================= ====================================== ================== 41 29 98.6 36 GTTTTATATTAACTACGTGATATGTAAAT # Left flank : ATGCTAAAAATCATCTAAAATCTATTGAATTTGGATTTATGATTAGTAGTCTTACACCATACTGTTGTTGCAAGGATATGCTGACAAAATCTCAATATATCGTAGGTGGAATTATGCCAACTGTACTCTTAGGAATAGTTCCAGCAGTAATATCAATTTTCACAGGTTCATTATTTTGGTTTATTATGGGTGAATTAATGATTTTGGCAGGTGGTGGAGATTTGACGATTTTATTGAAATTATTGAGATATAAGAGTAAAAAAGAAGAGATCCTTTATATGGATCATCCGTATGAATGTGGATTGGTTGTATTTGAAAGGGAAAATAACAAAATTTAAAAATATTAATAGATTTGCAGTGAGCGATTTAAAAGAAGAACATATGTATAATTATTGGAAATACTGTGTTTGAAGGGTGTATTTTGGAATTAATAAAAAACACTACTTACACCTCACTGCAAAAATTATATTTATTAGGTAATTTGATTAGGCTATAATATT # Right flank : TGGGCACATGATAGAGGAAAGATAAGATATGCTGAAGATTTTATATTATCTATATGACATAGGTAAAAAATATAATTGATAAGAAATTAAATTATATTTTTTAACAACTATATTTTATCTATGCAAAATATTAAAAATTATTTACTATAGGAAGCTAGACTAAGTTTCAAATCTTCTATAATATCCATTTTAAGATTTTCAGGTTCTATAACCTTAACATTACTGCCCATACTTAAAATCCAACTTTTAATTTCATTATAGCCCCTCATATTAGCCTCGAAAAGGATGTAATCATCAAAATCGGTTATTTTTTGATTATCTACCCAAATTTTTTCTTTTATTATGTACCTAAAATCATTTCGTATTTCTAAAATAACTTTAATTTCATTACCCTTATAAATACCAATACAATTTTTTATATAATTTTCACTTGAAAAATTTTCATCTATGGAATAGTTTTCTTCTAAAGTATTATATTCTTCAATTCTACAAATTTTAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTACGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //