Array 1 17121-17881 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIIK01000015.1 Escherichia coli strain FC10255 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17121 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 17182 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 17243 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 17304 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 17365 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 17426 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 17487 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 17548 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 17609 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 17670 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 17731 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 17792 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 17853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76272-77276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIIK01000022.1 Escherichia coli strain FC10255 Scaffold21_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76272 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 76333 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 76394 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 76455 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 76516 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 76577 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 76638 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 76699 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 76760 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 76821 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 76882 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 76943 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 77004 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 77065 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 77126 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 77187 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 77248 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //