Array 1 1368-1931 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHF01000017.1 Facklamia hominis strain UMB0111 .16933_8_39.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1368 36 100.0 30 .................................... TAGGTGTTTTGAGTTGGTGTTTTTAGGTAA 1434 36 100.0 30 .................................... GGCCTCTTTGTTATACAAATATACCATAAA 1500 36 100.0 30 .................................... ATGTTTTTTCTTTTTCAATTGGAGTTAAGG 1566 36 100.0 30 .................................... AATGTCTGTATTGGTGGATAACTTGCCTAA 1632 36 100.0 30 .................................... CAAGTTTTATGTAATTCGATGTTGCTCACC 1698 36 100.0 30 .................................... TATTAAAGCGGACGGCTTTTCTTGTGGTTA 1764 36 100.0 30 .................................... TCCTTCTTCGACTGGTGCTTCTTCAGGTAG 1830 36 100.0 30 .................................... AAAAGCTTACTGGCAGGTTTGAAAGGTTTA 1896 36 94.4 0 ..............................C....T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTAGAGCTGTGTTGTTTTGAATAGTGCTAAAAC # Left flank : GATTTAGAGGTTCAAATAAATTTAGACCCAGAAGTAAAGTCAGAACTCGAGAAATATTTGATTAAAATAGAGGAATTAATCGGACATCAGTTAATTGATCATTCTTTGGATTTAGTGAGTGATGACCTATCAATCTCAAAATTAATGAAAGCATTATCTATAAAAGTGAAAATGGAAAATAGAAGTATTTTCAACAAAATTTTAGATATTGTTGAAGTTTACAAATATTTAACAGGTAAAAAACTGCTTATTTTTGTTAATACTTGTTCCTACATGACGGTTGAAGAACTCACAGAATTTAGATCTTATGTGATTTTGAATAATACAAGGGTCCTAATGATCGAGCCAAGAGAAATTCCAGATTATACAAACTACTTTTTAGATAAAGATTATTTTTTGTTCAAAAGAATGATATAATGAGCGTATAGATATTAAGGGCACTTTTGAGACTGAAATTTTGCTGAAAATGAACAGCGCGATTACGAAATCTAACTTACGAG # Right flank : TTTTATTATTATATTAGTGATTCCAATAATTTTCGATACAAAACAGCCAAGTCCCTGGACGTTTAACTCCATGGGACTTGTTTTTTTCTATTGGGCATTCTGCCGTTCTTTTACGAGCTTAACGATTTCCTTGAAGTGGGGGTGCTTGGCATCCGCTAACAAGCGATAGATAAAGCTTTCGCTAGAGATTATAGAAGCTCCGTCATGTCTAAGTTGTTGTAAGGCCCATTCATGCTCTTGCAATGACCGTGCTGTGACGGCATCTCGGATCAGGTGTACTTCTAATTGAGGGTAGTCATTTAATAATTGGTGGGCTGTCTGTTCGACGCAGATAGAGGTCTCCATACCGATCAGGACAATATGTTGGATGGCGTCATCGATCTGGTCTAATACTTGAGGGAGGCAGGCGTTGAACTGGGTCTTCGCATAGCAGGGGGCTGCTTTTAAGTAGGGGATCAGGTCACCATGAGTGGCACCTAGGCCCTTGGGGTATTGTTCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATAGTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 22327-23818 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHF01000017.1 Facklamia hominis strain UMB0111 .16933_8_39.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22327 29 96.6 32 ............................T GTTCTACAAGCGAGTTGCGGGTCTTTTGAGTT 22388 29 100.0 32 ............................. CAATCTCCGTTCAATCCCTCCGGATTTATCTC 22449 29 96.6 32 ............................G GGAATTTGAATGTGATTGGCTCTATCTGGAAG 22510 29 96.6 32 ............................T CATATCAAACGAAGAGAAGAAGAATTGAGGCA 22571 29 100.0 32 ............................. GGTTTAAAGCTCCCCATACTTTGGTTTTATAA 22632 29 100.0 32 ............................. TCAATTCGACTGATGTACATTTTAGTATTATA 22693 29 96.6 32 ............................T ATCTTGGCGAATTGAGGGATGCTTTGTTGCCT 22754 29 100.0 32 ............................. TCTTTATGGATCGCACGGACGCTTCAACAAGC 22815 29 100.0 32 ............................. AGGGAATCGTGTACCACTTAGCGAGCTATACG 22876 29 100.0 32 ............................. TCCTGATGTAATGATGCTAGTGGCATGTCTGG 22937 29 96.6 32 ............................T CAAGGTCGAGATACCCTACAAAGGGCTTATGG 22998 29 100.0 32 ............................. GGAGCCTTCCGCCCTCGGTTCTTGCGATCCTT 23059 29 100.0 32 ............................. TGCTTCCAACTGTTAGCTCCATCCTTAATGAA 23120 29 96.6 32 ............................T AATTGATTCGCCTTCAGGTAAAGTTCTGATTA 23181 29 96.6 32 ............................T GCTCGCTCGCCCCATTCCAAGCAAAGCGAACA 23242 29 100.0 32 ............................. AGGAGTGGAAATTTCAAAGGAGGCAGAGAGAT 23303 29 100.0 32 ............................. TTCGACATCTTTTAGCAATCCAGTCAAAGTAT 23364 29 100.0 32 ............................. GTTCGGGCGGTGTTATGGAACTTCCGTTCCCG 23425 29 93.1 32 .......T....................T CGCACGATTCACTCACGATTACTCGAGATAAG 23486 29 100.0 32 ............................. TCACCAACCATTGAGGAAATACCGCTATTAAT 23547 29 96.6 32 ............................T ATTATTGTGCGGATCGTGAAAATTTAGGACAA 23608 29 96.6 32 ............................T GGCTTAATCATATCAGGGAGCGGCAAGCCTAA 23669 29 100.0 32 ............................. GGCCAATTTGATCCTTAATATTTTTGATGGTC 23730 29 100.0 32 ............................. TCCGCTAGTTTCTTAGCGGATTCGGATTGGAT 23791 28 93.1 0 .................-..........T | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.2 32 GTTCTTCCCGCGTAAGCGGGGGTGATCCC # Left flank : TCAAAGGAACATGCTATTATTGAGATAGCAGCTGTACTGGTTGAAGTGGATAAAGTAACCATGTTCTCCTCTTTGGTAAATACAGGTAGCCCTTTAAATGAAGAGATTATAGATTTAACAGGAATTACTAATCAGGACTTGATTGAAAAGGGCAAACCCATTGAAGAAGTGCTACTTGAGTTTTTGGATTTCCTGGGAGACCAGCTGGTTGTTGGATATGGGGTTGCGTTTGATATTGAGTTTTTAAATAAGGCTTTAGAAAAAATTGGAAAATCAGTTTTAAGTAATCAGATCGTTGATTTAAGGAGACTTGTAAAAAAAGAAAAGATGTTTCTATCAAATTATAAACTAGAAACAGTTCTTAGTGCATATGGGATCGATAAAAAAGTGCCCCATCGGGCTTTAGCGGATTCTAAACTTATTTATGAGTTATCCACTAAAGTGAATTTATTTTTGAAGATGGTCGAAGAGAAAGCTTGATTTTAAAGGGATCTTTTACT # Right flank : TTATATTGTTGCGATCAGACAGATTTTTTCTTTGTCCTTCCCATTCAAACGGGACGGTACAAAACCCAAACAAAAACCACCCCCAGCCCCGTGATGTTATCCATGGAGCTGAGGGTGGTTTGCTGTTTTTAGGAGACGAGGCGGTCTTTAATGGCCGCACCAAGGGTGAAGATCAATGCAGTAACTAGAGCGGGAAGTAACCATTCTAAGCCGAATTTCGTTAGTGGTAGGCTATAAGTCCACGTCGCCATGTTATGAAAGAGTCGATAAAAGATCGTGTTTTCCTGAGCTGCTAAGGCTTGTATGGTCCCGATTAAACCAGCAGCGATGACTCCTCCTGTATAAGTCTGATTGTATTTGATCTTGCGATCGAAGAAGGAAAGGATAATCAAGATCATAAACATCGGATAGATAATTGATAATACGGAAGACGCAATGCCAATGATTTGTTGTGTTCCAATCAGAGAGATAAGAAATTCAACACTGACACAGACTAGACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCCCGCGTAAGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //