Array 1 81573-80899 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTSS01000019.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 81572 35 85.7 38 AA.TGA............................. TCGATTTGGCTCATGTCTTGATCATTCGATTCTGTAGT A [81558] 81498 35 97.1 40 ...T............................... ACTGAAATCCGTTCGTCGTTAAAATTGAATGTATTACTTC A [81484] 81422 35 97.1 37 .........A......................... GTGAAGTTTTGGAAGCCGATACCTATCACTATCTCGT T [81407] 81349 35 100.0 35 ................................... ATCTCGGTGAGAGTGCCTGCACTGTAAATGTAGTC 81279 35 100.0 23 ................................... ATCGAGCACATAGCATTCGATAA Deletion [81222] 81221 35 97.1 34 A.................................. TTCTGAGTAATCCGAAACATTTTAGATACGAACT A [81207] 81151 35 100.0 37 ................................... AGATCTGCATCGCGTAGATCTGCACGGCGTAGATTTG 81079 35 100.0 38 ................................... CTCTTGGAATGTACCATCCTAAAAATTTATTGTCGTGA A [81065] 81005 35 100.0 36 ................................... TCGTCACAAATTAAGTTGATCGCAACAATTCGATTG A [80991] 80933 35 68.6 0 TGCTCA.CGC.T.A..................... | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 94.6 35 GTGCTCAACGCCTTCGGCATCAAAGTTATATTCAG # Left flank : TACTAATCGGTCGTGAGGCTTGACCATATTACGAAAGTCTTGAGGGCACTCAAGACCTTGCTAATATTCAACAACGCCAGGAAGAAATCGAAGAAGATTTCAAATAGGATAAACTCTCTATCGTAGTTTGTATGTTGTTAAGGAAAGATATCCAAGGTCGGTAAAACGACTAACATCAAACAAGAGCCAGGCTAAGTCAGTCTGGCTTTTTTTTATGTTTCACGCCCAGGACTTCGTGCTTCGCCTTCGCTTTGCACGAGTCCTAACCTCGCATTCGAAGCGACACTGTCGCTTCTCGGTGCTGCGGTTGGTCGTGAGGCTTGACCATATTACGAAAGCCCTGAGGACACTCGGGGGCCTTGCTAATATTCAACAACGCCAGGAAGAAATCGAAGAAGATTTCAAATAGGATAAACTCTCTATCGTAGTTTGTATGTTGTTAAGGATCTAAGTTTATTCAAAGCCGGAGAGTGATCTTCGGCTTTTTTATTGTTTTGGGG # Right flank : AGCATTTTTTTTTGATCATTTTTGCGCGGAGGGATTGCAGATACAAAGACATTGTTAAATAGTAAACAAGCATATCCTTCCATATAATTATTTTTCATATTTATATTTTCTATAACCAGTAGGATTTTGCTTCATTTGGTGTTTTAGCTTTGAATTTAAGGATTCAATTACATTTTAGCCGATTTCTAATAATGAATTGAATCAGAATTTTCGCAAGAAAGAAAAATAGGCGCCAAGTATCAACTGATCGAAACTATTCTGGAATCCAATGAAAATTGATACTATGGGAACTAAACAAAGATGAAAAGTGGAAAGTATTTGTTTTCGAAAGAGAATTATGTCTATGCCCGAAAGAGATACTTGAATTACAGAATTTTCAGTGTCTTTGGAGCATCCGGCCAGGCGGATTTTTTCTCCTGGGTATGAGCGCCGGAAGCACATTTGGCACAGAGTGTTAGGTAGAATATATCGTCTTCCTTTTCGGTGACTTTTGCCAATTT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCGGCATCAAAGTTATATTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 162141-162412 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTSS01000001.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162141 29 79.3 31 ....................T.GA.C.GA AAACGGGAAAGAAGAAGGTAAGAAATCAGGT 162201 29 100.0 32 ............................. TGATTCAATACGCGACCGGTCTTCCCGCTGAT 162262 29 96.6 32 .............A............... TTTCAGCCATTGTGGCAAAATCAAAAATTGGC 162323 29 100.0 32 ............................. GGGAAAACCTTAGACACCCGACAAAACGTTTT 162384 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TATAGTTCCAAGTCTCAATATATTATAATTTTTTCTAATATTCAAATCACATGATTCCGAATATAGAATCATAGCTCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAACCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGTCCTATACAAATTTTTAGC # Right flank : ATTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTACATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTCGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATTTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTCATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGTTAAACCG with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 23540-23145 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTSS01000022.1 Leptospira santarosai serovar Bananal strain 2ACAP Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23539 29 100.0 32 ............................. GAAACGCCAAAAGTTTATGACGGCCGCAGAGA 23478 29 100.0 32 ............................. CCTATCCGATTCTGGGAAAAAGGTCCTAATTG 23417 29 100.0 32 ............................. GAGCGGGATCCGTGAAGCGGGATTGTTCTATG 23356 29 100.0 31 ............................. AATACACTATGCAATATGGTATCAGAACTTT 23296 29 100.0 33 ............................. TTCCTCCTGGCACCCTGGATTCTGTCCTATTTC 23234 29 100.0 32 ............................. TCCAAATATTCATGGATGTGGAGTGTGGATTA 23173 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAACTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GCTGCGCACATCCGAATGAACCGCTTCCCACCATACGAGCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGATTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCGGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGAGCTACCATTCCTAAAGCTCCATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCTAAAAAATATCGGAATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //