Array 1 682823-683522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXTA010000003.1 Escherichia fergusonii strain RHB30-C01 RHB30-C01_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 682823 29 100.0 32 ............................. GAGCATTATATTTATTCGACGCTGACAGGCTC 682884 29 100.0 32 ............................. GAGGCGTATCGCAGTGAATGAAATCGACCCAC 682945 29 100.0 32 ............................. ACACGGGCGCAAAAACAATTGAACGCGCCAAA 683006 29 96.6 32 ............................C GCGCAGGTGGACGGATTTGGACAACTGGAGAC 683067 29 100.0 32 ............................. ACCCTGCCTCAATATTAGCTGTGCTGGATAAT 683128 29 100.0 32 ............................. AACGCGCAACAGAACGCCGCCACGCCGTGCGC 683189 29 96.6 32 ................T............ ATTTAAATCGCTATGCGCGTGATGTTATTAAC 683250 29 100.0 32 ............................. GAACTGTCCGAACGCATTACGGGCATCGGAGA 683311 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 683372 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 683433 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 683494 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 698482-699975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXTA010000003.1 Escherichia fergusonii strain RHB30-C01 RHB30-C01_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 698482 29 100.0 32 ............................. TTTACATCAATGAACAGATAGTTTTTACGCTG 698543 29 100.0 32 ............................. ATCATCATCACCGATGTGCATTCCGATAGGAT 698604 29 100.0 32 ............................. AGACTGGCGGCAGCGATAATAAATACATGAAA 698665 29 100.0 32 ............................. ATTCCCTGCTCGTAATACGCGTCGTATAGCGC 698726 29 100.0 33 ............................. TAGCGCTTTGCGGTGTCCTCCAGCGTGGTTTGC 698788 29 100.0 32 ............................. GTCGCGGTTGCAGTGCTGTCTTTCCCAGCTGA 698849 29 100.0 32 ............................. GTCAGTTGCCTGATTTCGCTGGCAAAACGTGG 698910 29 100.0 32 ............................. ACGTTAGTAAACAGCTCGCAGCACAACGCGGT 698971 29 100.0 32 ............................. CTATGAGGCTGAACGAAACGCCATCATGCTGG 699032 29 100.0 32 ............................. AGCAGGGCAAGGTTCGCCCGATGTACACCCTG 699093 29 100.0 33 ............................. CTGATTATTGCGCGTGAATTACTGGAGCATGGC 699155 29 100.0 32 ............................. AATCACTGCGCGCTCAGATTGCCGAGGTCACC 699216 29 100.0 32 ............................. GTTTCAGTTGTGATATTTGAAGCGGAGTTGAT 699277 29 100.0 32 ............................. AGGAAAACGGATGATGGAAACCCGTCGCCTGG 699338 29 100.0 32 ............................. AGCGCGAATTATCAATCATTCAAGCGATCGGT 699399 29 100.0 32 ............................. GGAAGCATTGCTTTTGCAGCGTCTTTCCGATC 699460 29 100.0 32 ............................. GCTAATGCAACGTGGTTTTCTGTGCTGGATAT 699521 29 96.6 32 .........A................... AATTTTACTGATTCAGCAGGGCAAATGAAATC 699582 29 96.6 32 ...........A................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 699643 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 699704 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 699765 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 699826 29 100.0 32 ............................. CTGCTCATTGCCATTGCCCCAGCAATACCAGG 699887 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 699948 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAACTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGGTCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //