Array 1 91611-90930 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JPUS01000025.1 Escherichia coli strain 2011EL-1369-1 Contig0000025, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     91610	    29	 100.0	    32	.............................	GCGTGCCAACGGAATGCACCCTCATTGGTGAT	
     91549	    29	 100.0	    32	.............................	TCACTGTATACCCAACTATTGGAGATCATGTA	
     91488	    29	 100.0	    32	.............................	GAATCATGATTCCGGACGACGTGCTGGCGCGA	
     91427	    29	  96.6	    32	.A...........................	CGCCGCATTAATATTGATGACCAATATTCATT	
     91366	    29	 100.0	    32	.............................	CCTCGCTGTAAATTCCAAAAACGATCTCTATA	
     91305	    29	  86.2	    10	..............G......G.G.G...	TGTTTTATAC                      	T,C,C [91277,91285,91290] Deletion [91267]
     91263	    29	 100.0	    32	.............................	CCATGACTATAAAAGCTTATATTTTGATAAAT	
     91202	    29	 100.0	    32	.............................	TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT	
     91141	    29	  96.6	    32	............................T	GTGTTTGCGGCATTAACGCTCACCAGCATTTC	
     91080	    29	 100.0	    32	.............................	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC	
     91019	    29	  96.6	    32	.A...........................	TTTTTGTTCTCTTCAAAACGCCGAACAACCAA	
     90958	    29	  89.7	     0	.A..........T.....A..........	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	  97.1	    30	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank :  GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 5.93
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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