Array 1 2394-3819 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000295.1 Frankia sp. EUN1f ctg00362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2394 30 100.0 39 .............................. AGCACGCGCTCCTCGCCCCGGACACGGTGACGTCCCGCG 2463 30 100.0 35 .............................. GCGCACTGTGGGCGGGCGGGCGGTTGCCTCGGCAG 2528 30 100.0 37 .............................. AACTTGCAACGCTGCTTGCACCCTCGGGCTGATCAAG 2595 30 100.0 37 .............................. TTCAGTGCGATGACGCCAGGAAGCCCGCAAAGGGTGG 2662 30 100.0 34 .............................. GGGTATCACGTCTCGGCTGACGCCTGCGTGGAGG 2726 30 100.0 37 .............................. TTGACGAGCTGGCCGATCTGATGATGGTGGCCGCCCG 2793 30 100.0 37 .............................. CTGCCTGGGGTCGTCGCCAGTGACGTCGACGGCGACG 2860 30 100.0 37 .............................. CGCACCGCGCCGCCCGAGGTGAGGGCTGATGGCCCCG 2927 30 100.0 39 .............................. TCTCTATTTCCGTTGGCGTTGTTAACCTTCGCACGGGGG 2996 30 100.0 36 .............................. ACCGGTTCATCGCCGCGGTGAACCCGGCCCGCCAGG 3062 30 100.0 37 .............................. CGAATGAGCCGCCGGCAGCCGCGAAGGTAACCGTGAT 3129 30 100.0 38 .............................. AGCGTGAACCCGGGGACAACCTGATCGCCGCGGATCTC 3197 30 100.0 36 .............................. CGGGTGCGGATGCGGTTCACCTGCATCCGTTCTCCC 3263 30 100.0 36 .............................. AGGGCGTGCAGTACCTCCTGAGTCGCCGCATGCCAG 3329 30 100.0 36 .............................. TGGACTACCGGCGCCCGGCCGGTAGCGGGGTGGCGC 3395 30 100.0 36 .............................. AGGAAGACCTCGCCTGGGCGGCCCACCAGGCCACCC 3461 30 100.0 34 .............................. CCGTTTATGGCACTGAGATTAAGCCAGGGTCAAG 3525 30 100.0 35 .............................. CGGATCCGGCTGCCGATCTCGGCGAGCGCGGCGTG 3590 30 100.0 39 .............................. ATGACGCGGACCGCGTGACCGAGCACCTCGGGGGCGGTC 3659 30 100.0 36 .............................. GTCCCGTATACTGCGATACCTTCCGGCCGGCTAGAC 3725 30 100.0 35 .............................. ATTACCTGTATGCGTGCGGTCTGGAATGCCTGGAA 3790 30 90.0 0 ..........................TG.G | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.5 37 GTCCTCATCGCCCCTACGAGGGATTGCAAC # Left flank : GGTCATCCACATGGATGACGGCCACCCGATCATCGGGCGGCCTCGAAAGGCCGGCAAAGCCAGCTACATGACGCAGAAAAAATTTCTCGTCACAACGAGTACAGCACCTACGCTACACTATAGGTCGATGCAGTCCAAGTGCCCGCGCGCTCGCCTGGGTCCGTCGACGGAGTAGCCAAGCGAGCCCCTCCCCGCGCCCCGCAGGATCCGGCCCCGGCCGCAACACGCTGCAGGTTGCGGCGCGGGATCGAATCCAGACGCTGTCGGCCCCCGTGGCACCATTCGTGGCCAGGGGGCCCGCCGGCCGCGGATGGCCGCAGAGCAGGGGTGACGGGGGCTCCGGTTCATGGGAACGGCGACCTCGCGACCGGCCGCTTCGCCAGCGTCGGCCCACCAGTACGGCGATCTCGGAGATGTTGATGTCAGACCGGAGGTTCGCTGCAAAACGAGCCTCCAGCGCAGCTGCGACACGCCGTCTCACCTGCGCGTTTATACTCGGG # Right flank : GTGCCCTTTTTCTTCCGGACAGTGGCCCCTACTAGAATAGGGGACAGGCCGGAAGGAATGATAGTTGACGCAGAAGCGAAGAAAGTTCACGCTTGAGTTCAAGGAAGAAGCCGTGCGGATGGTGATCGAGACATCCCGTCCGATCTCCGATGTCGCACAGGAATTGGGCATCCTGGAAGGAACCCTAGGGAGCTGGGTCGCCACCTACCGGCGTGCCCATGCCGGTGAGGCCCCGCCGGCGACCGCCGACGAAAGTGCCCGGCTCCGCGAACTCGAGCGGCAGAACCGCGAGCTGCGCATGGAAAACGAGTTCCTGAAAAAAGCCGCGGCGTACTTCGCCAAGGATCATCGGTGAGCGACACGTTCGAGTTCATCGATGCGGAGTACGCCGCCCGCACCACCGCGAATGCTGGCACACCGACGCCGTCCATCATCCAGATGTGCGCCTGGCTCGACGTCTCCCGTTCCGGCTTCTACGAATGGCGTGACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1158-883 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000369.1 Frankia sp. EUN1f ctg00276, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1157 29 100.0 32 ............................. GAGGAGGTCACCGGCCAGCCGCCCGCGCAGCC 1096 29 100.0 32 ............................. CCGCTGGTCGGCTGGCCTGACAGGGGGTGCTC 1035 29 100.0 32 ............................. GTTCGCTTCCCCTGCGGAGACCACGGCCGGTT 974 29 100.0 32 ............................. CTGACGAGAGGGCCTCGCAGGAGCTGATGGAC 913 29 82.8 0 ..................T.....CCGA. | CT [887] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GCCCGTGGGGGTGATCCGTGGACATCAGCGGGCAGACAAAAGGCAGGTGA # Right flank : CGAAATCTGACCAGGCGTTGCCGAAGTAAAACGGCGCACCCTTCAGCCTTGGAGGGTGATCACTGTGGAGGACTGGGCCGAGATCCGGCGGCTGCATCGCGCTGAGGGTGTCTCGATCAGCGAGATCAGCAGGCGGCTGGGGATCGCGCGGAACACGGTGCGGCGTGCTCTGGTCTCGGACCGGCCGCCCCGCTACGAGCGAGCGCCGCGGCGGCGGTTGACCGACGCGGTCGAGCCGGCGGTGCGGGCGCTGCTGGCCGAGTATCCGCGGATGCCAGCAAGTGTGATCGCGCAGCGGATCGGCTGGACGCACTCGTCGTCGATCCTGCGGGACCGGATCAGTCAGATCCGCCCCGAGTACGCCGGCGTGGACCCGGTGGACCGGGTGACGTACGAGCCGGGACAGGTCGCGCAGTGCGACCTGTGGTTCCCCGAGCCGAAGATCCCGGTCGGGTGGGGGCAGACACGGACGCTGCCGGTCCTGGTGATGACGGTGGCGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10783-9844 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000206.1 Frankia sp. EUN1f ctg00408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================== ================== 10782 29 96.6 33 .....................A....... GATGGCCTGCCCGGCAAGGTCAAGGTTGTTGAG 10721 29 100.0 32 ............................. GTGGTGCCCGTCCACGCCAGCTCGAGGGCGGA 10660 29 93.1 32 ...............A............T GGTGCTCGGCTTCGCTCCGGCCTCGACCCATG 10599 29 100.0 32 ............................. ATCGGGCAGGCCGGGTCGCCGACCTGGACCGA 10538 29 100.0 32 ............................. TCGACCAGGGCACCATCGACGCTCTCGAAACC 10477 29 100.0 32 ............................. GTCAACGACCTCTTCCGCCGCAATGTCCACCC 10416 29 100.0 32 ............................. GACAGCGCGAGCGCGAGGCCGGACGGCACCTC 10355 29 100.0 32 ............................. GTTTTCACCTCTCGAATCACACCGCCCGATCC 10294 29 100.0 66 ............................. CCAGCCACGCCGGCACCCCAGCCGGGGTCTTCCGCGCAAGCTCCGTGAGCACTACGCCGCTCTCTG 10199 29 72.4 114 ...G.....G..TA..C......CT...C CGGCTGGCGTGCTCCACGATCTCCTCGTCGGTGTCGGGTCTTCCCCGTGCGGACAGTCGTCCCCGCGTACGCGGGTCTTCCCCAGGACGACCAGATCGGGCACCGTTCGTACGC 10056 29 75.9 31 ...G.....G...A..C......CT...C CCACCGGCCGCGCCGTAGCTCTCTTCTATCT 9996 29 75.9 32 ...G.....G...A..C......CT...T CCATCGCAGAGTGGTGCTTTTCCCGCCGTTAG A,C [9975,9977] 9933 29 72.4 32 ...G.....G...A..C...C..CT...C GTCCGGCCGTTGCGCGAGGATGACCAGTCGGA 9872 29 75.9 0 ...G.....G...A..C......CT...C | ========== ====== ====== ====== ============================= ================================================================================================================== ================== 14 29 90.2 41 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GCGCCGACGGTGTCAGCGACCCGGCTGATGTCCCGCTCCCCCGGGCCGCGTCCCGCGGCCACCAGGCACACCCGCTTCGCTCCGGCGGTGATCGCCCGCTGCGCACTGTCGGCGGCGGCCTGCGGGTCGATCCACGAATACCGCAGGATCGGTGTCGTCGAGCCGCGTCGCTGGGAGCAGTAGCCACAGTCCTCCGGGCACAGGCCGCTCTTCATGTTCACCAGGTAGTTCAGCTTCACACGGTTGGCGAAGAACTCCCGACGGACCCGCCCCGCCGCCGCGACGACATCGAGGATCACCTCGTCACCGGTGGCCAGGAGCGCAAGGACCTCCGCTCGGGTCGGCGGCTGGCGTTGCAACGCCTTCACCCTCAGCGCTTCGAGTAGTTCATCAACCTCGGAGAGTGCCATGCCGACCATCTTTCGGGTTCCGCGGAGCACGGCGCAATGTCGAGGCGCGATAAACCTGCCGGACGATGCTTGTCGCCTTCGACGCCATGC # Right flank : GGCTCACCGGCGTCGACGGCGAGCCGAGAGCTGCGCCGCAACATCGCCCCGCACGACGGTGGCCGCTACGACGCGGACCTTGCTCATGCCCGCGCCCGCGAGCGGGGACACCGGTCTCGTCCGGGCCGCATCCTTGATCCATATTGTGGGTGGTCGGTGCCCGTGACGGGCACCGACCACCCACAACGCCGGACCGTTCAGCGGCGGCGCCGTCCGGCTGCGGCGGTACCGACCACCCACACGACCGCCCCGCTGTGCGTCGGCATGGGGCTGGGCGGCGCGGGGTGGGGTGGGGTGGCTTCCTGGACGCGACGGCGATCGCGATGGCCACGGCGATCGCGATGGCGATGACGATCGCGATGGCGATGACGATCGCGATGGCGATGACGATCCGCAGCCAGCCAAGGCTGGAATTGAGCTGAACCTGCCGACTCGCGTCGCCGCTGATCGTGATGTCGCCGGTTGAGGCGCGTACGGCGCGGACCCCACGGTGGACGTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26033-24943 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000111.1 Frankia sp. EUN1f ctg00392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26032 30 100.0 35 .............................. CTGCGCAAGTCGCTCGACGGCGCCGTGCTGATGCG 25967 30 100.0 36 .............................. GCTCATCGAGAGGACCAGGACCTGATGCCCTTCCTC 25901 30 100.0 35 .............................. GTGCGCGTGTCGCTGGGCGGGCGGCCAACCTACAG 25836 30 100.0 38 .............................. CCGGCAGGCGGAATCTGAAGAACGGGAAGGTCCTGAGT 25768 30 100.0 37 .............................. ACCTAGAAGGCAGGCTATTCGGAGAGCATCAGTTCAG 25701 30 100.0 36 .............................. TGCTCGCGGATCCCAGCTCGGCCGCCAGTACATCGC 25635 30 100.0 37 .............................. GTGTCGCGGACGGGGTCGAGGGCGGGACCCGCCTCGT 25568 30 100.0 37 .............................. TCCGTACCCGCATGACCTACGTCATCGGCCGGTTCGT 25501 30 100.0 36 .............................. TCAATACCTCTTGCTGCGTGCCGGTGAACACGTGCT 25435 30 100.0 37 .............................. CGCACCGCTCACCGTCGCCATCGGCTGCGCCGGCGGA 25368 30 100.0 37 .............................. TCGAGGAGCGGCCGGGGCAGGCCGGGCTGGGCGGCGA 25301 30 100.0 34 .............................. ATTACAAAAACTCTTGGTGGCGGATCACCAACTG 25237 30 100.0 36 .............................. ATGAACTACGGAAGAAAAATAAACGCTGCTCTTTTG 25171 30 100.0 37 .............................. CCGAGTAACTCGAACCCAAGGCGAGACTATCTTCAAG 25104 30 100.0 37 .............................. TCCAACCTGTGCCGTGTCGTGATGCTCGGCGCGGCCA 25037 30 100.0 35 .............................. CACGCCACCACCTGGGACGACAACGGCCTCGTCGT 24972 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Left flank : ACCACGACGGTCTTCAGCCAACGCAGCAGAGGGCAGTTTGAAGCCTCCCCCCGAAGGGCGGCTCCGGAGGGCCTTCAATCCTCCATCTTTCGTACAGCACCGCCGTCCATCACCCAGCTAACAAGCAACTTTCAGCGTTCGTGGCACACCGGCTTTTTTCAGGAACTGGTTCTCCATCCGCAGCTCGCGAACTTCCCGCTCGAGTTCGCGTAGCCGAGCGCTTTCTTCGTTGGTCGGCGGTGGTTCCTCGCCCGCGTGGGCGCGCCGGTAGGTGGCGACCCAGGCTCCGAGCGTTCCCTCGAGTATGCCGAGTTCACGTGCGACGTCGGTGATCGGACGAGATGTCTCGATCACCATCTTCACAGCCTCGTCCTTGAACTCGGGCGAGAACTTCCTGCGCTTCTGCGTCAACTATCATTCCTTCCGGACTGCCCCTATTCTAGTAGGGGGCACTGTCCGGAAGGAAAAGGGCACCTCAGCATCACGAAGATCCGCGTCAT # Right flank : CCGAGTATAAACTCGCAGGCCACACGGCGTGTCGCGAGGCTTCGCAGGGCCCGATCTGCAGCGAACCTCCGGTCTGACATCAACATCCCCACGATCACGTCGGCCGACTGATCGTCTACAGGATGTCAGCCGAGGCTCTCGAAGGCGACGTCAGCACCGGGCGATAGGGTGTAGACGAGCACGTGGTCGTGCAAGCGGTCGATGACCTTCTCGACCGAAGCCCAGGAGCTGTGCGGGGCTGAGGTTCCCCTCGAAGACGCTGCGTTGCACACGGTGCAGGTACCGCCGACACAGACCGACGATCTTGCTAATGCGTTCGGCGGCGGTATCGTAAACGACGACCACCTACACGTTCTGTCACCACCAGATCCGGAACGGCCTGTATCGCTCGCCCTCGAGGCAGATGCGAACGGTGGTTCGCCCTGTATCTGAAATGTACGGCCGCTCCCTGACATTTTTCGAACCTCCCCGCACCCGTGGGGGTGGGGAGGACGGTGGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 897-538 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000120.1 Frankia sp. EUN1f ctg00361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 896 30 100.0 36 .............................. TCATGCGCTCGCCGCGCTGGCCCGCCGGTATCCGGA 830 30 100.0 36 .............................. CGGCCACCGTACTCCCGTCCGGGCGAGACGTCTCAC 764 30 100.0 36 .............................. AGCACGGTGGAACCTCCGGGACACAGACGCGATACC 698 30 100.0 36 .............................. ATCTGATCGCTAGCAGGACCAGCCACCCAATCCCCC 632 30 100.0 35 .............................. AGCGGCATGTTCGGCATCACGAAGATCCGCGTCAT 567 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 36 GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Left flank : GAACACGCTATACGTATCGTGATCATCCAGCGACTCACAGAAGTGCCGTCCGTGACGCAAAGCGGCCACGAGGTCCTCACGAGAAAGCGGCGAAGCGAATCGATGAGAAAATACGCGATAGCCGTGCATCCGACCGCGACCGATGCCGAGGGGTTCGGCGAGGAACTAATGGTGGCGCCAAACAACACGATGAGTGGATCGAAACGCCGGGTGGCCTGGGGGAATCTCATCCCCGGGCTACCACAGAACGGAGCGTGACAGTCTCCCGTCACTCCGCTCGTCCCATCCAGTCCGTCAGAACTCAGTCATCCAGACCCAGTGAGCGAACAGGCGTGGCTGTCTGCGCAGCAACCCGTTCCACCACCGTTTGGCCTTCTCGAACGACCTGAGCCGTTTAAATTTCCGTCTGATCCAGAGCACCAGGTAGGTATTGACATGAACCGCACCGGGTCCTACAGAGGGCCGGAGCACGCCGCACCCGGCTGGGACATCGGCGGCAC # Right flank : AGCGGCATGTTCGGCATGGTGTGCCCCGTTGATTCCGGACAGCCGTTACTAAGAGCGTGTCTCACGTGGGTGTAGTGGATCTTCTTGCATGATCTGAGGCGTGAGCGACCGCCTTGCCCTGCGGCTGGTACCGGACGAGCTCTGGGAGCTCGTGGAACCTCTGTTGCCCTCCTTCACCCCGCGTCCGCAGGGTGGGGGGACGGCTCCGGTGGACGAGCGGGCGGTGTTCACGGCGGTGGTGTACGTGCTGACGTCGGGCTGTGCGTGGCGGCATCTCCCGCCGTCGTTCGGGGTGTCCGCGCCTACGGCGCACCGCCGGTTCCAGGTCTGGACCCGGGCGGGGTTATGGCCCCGGATACATCGGGCGGTGCTCGACCGGCACGGCGGCGCCGGAAGCGTGGACTGGACCTCGGCGATCGTGGACTCCGCGAGCGTGCGAGCAAAAAGTGCCCCTATGTCCTTCGTCAAGCCGGTGAGGGGGTCGGGGCCGTCGGTAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 10075-12072 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000120.1 Frankia sp. EUN1f ctg00361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10075 30 100.0 36 .............................. TACGCCGTCGGCGCGGCGGTCTCTACCTGGTATCCG 10141 30 100.0 37 .............................. GCGGGGATCGCCAGCGTGCCGAGCGAGTCGTAGCAGG 10208 30 100.0 34 .............................. TGGTGGGGGTAGTCGTGCCCGTGGTGGTAGTCGT 10272 30 100.0 38 .............................. GCGGCTTTGCCGTCGAGGGTCTCGATCTCTACACCGCG 10340 30 100.0 34 .............................. AGCGGTCGGCTCCACTCCATGGGGATTTGCTGCG 10404 30 100.0 36 .............................. GGAACGTCCTGACGCTCGCCGCGATCGTCCCCACGA 10470 30 100.0 36 .............................. TGGTACCGGCGTGGCGGGGCGCCGCGCGTGGAGAGC 10536 30 100.0 37 .............................. GTGAAGTCCCCGTAGACCCCGTCCCCGCCGAGCTTGG 10603 30 100.0 36 .............................. CTCCACATGTCAGTCGAGCTTGCCGGCTGGCTGGAC 10669 30 100.0 37 .............................. TGTTCGGGGTCAGAAAACCTGGCTCGCCGGGTTCGGG 10736 30 100.0 36 .............................. CTGTAGGCGGTGCCGGCACTGTTGGCGACCTTGAGC 10802 30 100.0 38 .............................. TCGAGGACCTGCGTGATGGCCATGATGCTGGGCTCGCC 10870 30 100.0 36 .............................. GAGGCTTTCCACTGGGATGGGCTCGGCCTGATGCCG 10936 30 96.7 31 ..........................A... TGTACGCTGGACCGTGAGGGCAGGCATGGGA 10997 30 100.0 36 .............................. GTGCGGCGGCACCTACTACCCGGTCCCCGGACGGTC 11063 30 100.0 34 .............................. TGCGGGAGTTGGCCATGCTAGGAGGTAGGTCGGG 11127 30 100.0 35 .............................. CTCGTGCCGACCCGGGACCGGTACCACTCGAGCGC 11192 30 100.0 37 .............................. CCGAGATGGCCCTCGGCGCTCCAGTGGGCCGCGTCGT 11259 30 100.0 36 .............................. GCCATCCGGACGGGGACGAGGTGCCGGGTGACGCAG 11325 30 96.7 36 ................T............. CGGGAGCTGGATCGGGCGGCGTGGGAGGCCGAGCTC 11391 30 100.0 36 .............................. TGACCATGCCGTGAGGGGTGGCCACGCCGTCCAGCG 11457 30 96.7 37 .........A.................... TACGGATTCGAGATCGCCGCGCCGAAGAGAGCCGGAA 11524 30 100.0 36 .............................. ATCGAACGGATATCGACCCCGGCCCTATCGGTGATG 11590 30 96.7 31 ..........A................... GTGGCGGAGGGGACCCGCGCGGCGGCGGCGA 11651 30 100.0 36 .............................. TCGATCGTGAAACCCCAGTACTTTTCCTGGTCGACC 11717 30 100.0 36 .............................. TGGAACCCGTGGTACGAGCCCCGGAATTTGATGATG 11783 30 96.7 36 ..........A................... GACGTTGAGGAGAGGATCCGTCAGGCGTACTGGCGG 11849 30 100.0 38 .............................. GTCACGGTCATCGGCACCCGTAGCCCCAGCCCCCACGT 11917 30 100.0 32 .............................. TTGATCATTCGAAGACGGCGCAGTCATAGACG 11979 30 90.0 34 ..T.........T.G............... TCCGGTCCGGTCCCGCGGATGCTGGCCATTGACC 12043 30 86.7 0 ........C.T.......G........G.. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 98.7 36 GTCCTCATTGCCCCTACGAGGGATTGCAAC # Left flank : ACCGCGCCCTCAAGCGCTCCGTCGCCTACGACGAACTGCTCTACCTCGAAGCACTCAAGCTCACCCGCACCTGCCTCGAAGGCGAGCGATACAAGCCACTCCGAATCTGGTGGTGACACAGCGTGTACGTGATCGTCGTCTACGACACCGCCGCCGAGCGCAACAGCAAGATCCTCGGGCTCTGTCGGCAGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAGGGCAACCTCAGCCCAGCGCAGGTCCTGCGCTTCCGTCGCTCCGTCGAGAAGGTCATCGACCACTCCTACGACCACGTGCTCGTCTACACCCTGCCGCCGGGCGCTGACGTCGCCCGCGAAAGCCTCGGTGCGGGCTGGGCGGCCCCAAGTGACATCCTGTAGACGATCGGCAGGTCACGTGATCTCGGAGATGTTGATGTCAGACCGGAGGTTCGCTGCAGATCGGGCCCTGCGAAGCCTCGCAACACGCCGTGTGACCTGCGGGTTTATACTCGG # Right flank : CATCGCGGCCTCGACCTGCTCGACGAGGATTGGTGTGCCCCGTTGAATCCGGACAGGCCGGATCTGGCGGCTCTCGAAGCGGTGGCTATGATCGGGACCGGTTGCGTCGGGGGGTGTTCGTGATGCGTCTGTTCGTGCATGTGCTGGGTGAGTCGGACCTGGGCGTCGACAGCCAGGCTGGTCGGTTCGGCCGGTCTATGGGACCGTCGCTTCTTCAGCAGGTGACGCTGCTGAATGACGCGGTTGACGCGAGGGATGCGGACGCGGTCCGGGAGCTGCTCGCGACACCCGTACCGGGCTGGTCGGCGGCGCCGCTGCGGATACTTCTGGATGGTATGGGCAGTGGCGATCTGCTGCTGCTGGTCGCGACGAAAGGGGGTGATTCGCGCGATACCTGCGACGCGGCGGTGGCAATCGAGCGGGCAGTTGGGCTGGTGCCTGACCTGTACGGTCCGGCGGTCGAGGCGGGCCGTCAGATAGCGCGACTGGTCGTGCTCGAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATTGCCCCTACGAGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 58640-59140 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000049.1 Frankia sp. EUN1f ctg00330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 58640 29 86.2 32 TGA.G........................ TGCGCGATGCCCTGCGCCCCGGCCGCCGACCG G [58643] 58702 29 100.0 32 ............................. AGGATCGCCCTGTACGAGCTGCGCCCGCACGA 58763 29 100.0 2 ............................. CA Deletion [58794] 58794 29 96.6 32 .....G....................... GCGACGCAGCCGCGCCGGAACGTGACCGGTGG GGGT [58801] 58859 29 100.0 32 ............................. CAGTTGAGGATCTCCACACCCTTGTTCTTGAT 58920 29 96.6 32 ............................G TCAGTGAGGTCGGGAAGGTTGCCGACCGGGTG 58981 29 100.0 41 ............................. GACGCCCCCGGCGTCCCCGGCGTCCCCGCAACCCTCGTCTC 59051 29 96.6 32 ............................T GTGGAGGATGACATGCCGAGCCCACTGCAGTG 59112 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ========================================= ================== 9 29 97.0 30 GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Left flank : TGCCGGCCCCTCGGCGTCGTTGACCCCGGCGGAGATCGCTGAACGCGACGCGCTCACCGCCTATCGGGGGATGTGGGAGGACTGGATCGCCATCGCCGCCACTGGCGACTACCAGGACCCGCGCCTTGCGCGGCACGTCAGCGGCGAGGCGCTTTCCTCGATCTATAAGGCCGTGTACGCGAACCAGCGGGACGGCCTCGTCGCGCGGGGAGCGCCAACCTATGCCGGTTCGGTGACGGCCGCAGAACCAGCCGCAAATCCAGATCGTATTACCATCGTTGATTGCTCCGATGGAAGTAGCTGGCTCAACTACCGCGCCGATGGCCAGCTGGAGGACAACGAACCCGGAGGGCGTCACGCCATCCAAGCCCTGGCCCTGAAGAATTCCAACACATGGAAGATCGACGTCCTGGTTATCCAGGAAGTTGGCACATGCTGACAGTTAAATCCGCCGTCTTTCTCACAGCAGGAATGCTCATCTTGTCCTTGCCGTGCGCAGC # Right flank : GTACACCACCTGCCGAGCATCAGGCGCGACCGCGTCGTCCCCGCGTGTCGGCGGCCACGAGATCCTGCCCAGTGACGGCCGTGTGGGTGCCCGTGTTGACGCCGAGCGAAAACTGAGCGGTTCTTGCCGAGGTAAATCGGCGCACCCGTTGGTCAGGTTAGTCGCGGTTGGGGCGGTCTTTGGCAAGCAGTTCGCGGCGGGCTCGGGTGCGGTAGGAGTCGCCGGTGAGGGTGAGGACCTCGGCGTGGTGGACGAGCCGGTCGATCATGGCTGCGGCGACGACGTCGTCGGAGAAGGTCTCGCCCCAGCGGCCGAACGGCAGGTTCGAGGTGACGAGGATCGAGCCCTGTTCGTAGCGTGAGGCGACGAGTTGGAAGAACAGGTTGGCGGCGTCCTGGTCGAAGGGGATGTAGCCGACCTCATCGATGATGATCAGCTTGTAGCGGCGGATCTTCTTGAGTTCGGTGGTGAGGTGTCCGGCCTGGTGTGCTGCGGCGAGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2948-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000311.1 Frankia sp. EUN1f ctg00425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2947 30 100.0 36 .............................. ACTGCACCGGAAGGTGCGGACGCTCAAGCAGGGATG 2881 30 100.0 39 .............................. CCCTGCCGGAGGGCTGACCTGCCATGTGGTTCTCCCGCT 2812 30 96.7 36 .........................A.... GGGAGTGCGGCGATGGATTCGCGGCGGCGGCGCAGC 2746 30 100.0 37 .............................. CTGATGATGAGATAGGGGCCGCCGTCCTTGCGGCGGA 2679 30 100.0 37 .............................. GCGGCGGTCACGCCGCCACCGCCGGGCTGGAATGCGG 2612 30 100.0 38 .............................. AACTGGTACGCACGCGGCTGTCGAATCCTCCGCGCCCA 2544 30 100.0 38 .............................. TGGATGATTTCTCCTAGCTGGGCCCGCGTAATGCTGGT 2476 30 100.0 36 .............................. GTTCTGAGATGGTGGCCGGGTCCTGGGCCGTTCCGA 2410 30 100.0 35 .............................. ATGCGCGCGGCACTGGACGTCGCCAGGTAGCCACG 2345 30 100.0 37 .............................. CGGTCGTGCCAGCCCCACGGGTGCCCGCACAGGCAGT 2278 30 100.0 35 .............................. CTGCTGGCCACGGGCCGGCTGCTCGTCGCGGACTC 2213 30 100.0 37 .............................. CGGGTCGATGTTGGCGCTTACCTGGCCGGAGTTGCTC 2146 30 100.0 36 .............................. ACCCATCCGCCCGCACCACGAACCTGGGGATCAGAT 2080 30 100.0 37 .............................. TCGACGTGGATGCCGGTCTCCTCCGCGAGTTCCCGGA 2013 30 100.0 35 .............................. GCGTCGTACAGCGCGAGCAGCAGCCGCTTGTCGTC 1948 30 100.0 36 .............................. GTGCCGTCCGCCAGGTGCAGGCTCCAGGTGCCGCGG 1882 30 100.0 37 .............................. ATGCGTCAAATGGTCCGTGACGCGATGGGGGAGCGGT 1815 30 100.0 35 .............................. ACGACCCCCGGGGAGTTCAGCACGATGATCTGCTC 1750 30 100.0 35 .............................. CCCACAATTTCCTGCATACGGTGCGTTACGCTGAT 1685 30 100.0 37 .............................. ATCGTGTGCGTATCTGGCCGGATATCGGCCCACACGA 1618 30 100.0 37 .............................. TCGGTGGAGACGACCCAGCGGGCGAACTCGCGGAGAC 1551 30 96.7 35 ..........................T... AACCGGAGCCGCTTGGAAACCTTGGTCGTCACCGC 1486 30 96.7 35 ..........................T... AACCGGAGCCGCTTGGAAACCTTGGTCGTCACCGC 1421 30 100.0 37 .............................. GCGTACCGGGCCAGGGTGGGCAGGGAGGACCCGTCCT 1354 30 96.7 37 ....................C......... ACCCAGTCCAGGCCGGAGAGCACGACCGCGACCGGGC 1287 30 93.3 0 ...........T...............C.. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.2 36 GTCCTCATCGCCCCTACGAGGGATTGCAAC # Left flank : CATCACCATGGCCGCACGAAACCACCAGCTCACCGCCGGAGCTATTTTTCATTCGGACCGCGGAAGTAACTATACGTCTACCCAGTTCGCCGCTACGCTGAAGGGACTCGGGATCCGTCAATCCGTCGGCCGGACCGGGATCTGCTATGACAACTCGATGGCCGAGTCGTTCTTCGCGACCCTGAAGAACGAACGCGTCCACCGCACCGTCTACCCCACCCGCGAACATGCCCGACGCGATATTGCCCGATACATCGAGCTTCGCTACAATACGACACGCCGCCACTCGGCACTCGACTACCGCACTCCACGACAGGTCCACGATGAATACCTGAAAAAGCAGCCAGCTGCATAGATCAGCTTAATAGCAGCTGTCCGGATTCAACGGGGCACACCACTGCAACTGGTGGTGCTGTTGCCGGCGGCGGCCGTCGATACGGT # Right flank : ATCGACGGCTCTCTCGAGGGGAACACCCAGGAGCGCTGCGACGAGTGCTGGAACCCAGGCACCGCCGGGGGGCAGTTTTCAGGAAGCTGTGAAACTGCCCGGTGACGGCCACGAGGTCGGCTCGATGCTGGCCCACTACCGCCCTCGGCGATGGCACATTCGCAGCCCGACGTCTCGTCCGCGAGCGCCAGCAGGACGTCTGGGCGCCTGCCGGACCGCCAGCCCGGGAATAGTTGGGGAAGGTTGGTGGGAGGTGATCGGGGAGCGTCTCGGCGAGCTTCGCTAGATGCTGTATCGAATCTTCGCTAAAATCTCTCATCCTGCTGAGGGTCGGTCATGACGGAACAGCTGCGGAGCGAGAAGGTGGCGGATCTGCCGACGGGTCGGAAGCGCCTGTGGACTGTCGATGATCTCGCTGCTTTTCTTGGTGTGCCGGTAACAACGGTGTACAAGTGGCGCAACGAAGGGGAAGGGCCGCCGGGCTATCGGATTGGAAGGTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 11285-10525 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000079.1 Frankia sp. EUN1f ctg00346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11284 29 96.6 32 ............................G CCCGCCGCGGCGCGAGCCGGGCCCGGGTGAGG 11223 29 100.0 32 ............................. CTGCCGCCCGGCATACCCCGCCAGCACATGGT 11162 29 100.0 32 ............................. GTTCCCGGGCGGGCGCCCGACACGCCCGCGAG 11101 29 100.0 32 ............................. CGTGGTGTGGGAACATGCCGTCTGCGGATGAG 11040 29 100.0 32 ............................. GCCACGGCCCGCGCCGCCTCCTCGGCCGTGCC 10979 29 93.1 32 ..G.........................G TCATCGCCGAATCCGGCGCCCTCGTCTTCGTT 10918 29 96.6 32 ............................G ACCCGGGTGTGGCCGGTCGTGTCCTCGGGCCG 10857 29 100.0 32 ............................. TTCGTCCAGTTCACCCCTGGCGGCGTGCGCTG 10796 29 96.6 32 ............................G CGAGTTGGATCATTGGCTCGCTCCCACGCCGG 10735 28 93.1 32 ........-...................G GCAGGCCCCGCTCGCCGAGGTAGTCCGAACGC 10675 29 100.0 32 ............................. TCCCGCACGGTCGCGGTCTTCCGTGCCTGCAC 10614 29 96.6 32 ....................C........ CGCGTTGGACCCGTTCGGGAACGAGCTGCGGA 10553 29 86.2 0 .....................C.G..GA. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Left flank : CATCGATTCGCGGTCTGCGGGGGCGCGGTTCTTCTCGTGCCCGAGGTGCTCGGTCATCTCCTCGGTAAGCGCGGCTTCCAACACGGACTTCGTGAACAGCTTCAACAAGCCGTCCGGACCCGTCAGCGCCAGGCCACGGGCCTTCGCGTCCGCGACCATCGCCGCCGCGGCGGCCTGCTCCGGCGACAGCTGCCGCCCCGACTCACGATCTTGCTTGCGAGGGGTCATATCACCCGATGTCATCACTCACAGTGCCCATCACGCCGGACCTGCGCCCGGCGTGTCGGGCCGGAAACACCGATCTTGAAACAGCCCCCGACCGCCTCTGGACCCTGCCCACCCAACGCATCGGAGACGGCCAAGCAGTCATGATCGAACCCGCCAGCAACGAACAAGGCTGGGCCGCCCGCACCGCAGGCCGCGACCGCTACCACCCCATCGACTACGACGGACTGATGCTATTTGCCAGCCCTCGCGGCTAAAATCCCAGCTCAGCAAGT # Right flank : GCCGAGCGAAATCTTGAGGTGTATCCCGTTCCTCGGACACCTTTCGAGATGGGGCTGCCCCTCCTGGCTCTCCTGGAGGGACCCGAGTCGTACACCCCGCTACGAGGCATCCAGACACCGTCCTGATAACTCCCCTCACAAGATTTTTAGAGAAACTGCCCCCGACGCGGGCCTGTAAAAGCTACGGCTCTGGCTCATATTCGGTTGTGACGCAACGTGAGTAGACGCCTGACGTCCACCTCGCCTGACGTCGGATGATTTGGGCATCCGCCCCGTGGGTCGCCGGACTTCGGGCCGATGCCAAGCTGCCCGGTTTGACCGATTGGCCGGCCGGCGGCACCCACCTGCGACGTTGACGCACGGTCACCATCGGATGTGCACCGGAGCCGATCTTGACACGGTCCCATAGGCCATTGGCCGTTCACCAGGTGCAGCGGGCACGCGAAGCTGCTATGTCATGTCAGGCCGCCTTGGGTTCCCGGTTGGCGGGCGCGGCTGAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28412-26917 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000079.1 Frankia sp. EUN1f ctg00346, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28411 29 96.6 32 .A........................... GAAGGCGTCGGCGGAAAAACGCGGTCTCGGGT 28350 29 100.0 32 ............................. CCGCGGCCGGCGCCGGACTCGCTCGACGAGAT 28289 29 100.0 32 ............................. GCAAGGGCAACGCGGTCGTGATGGCCCAGGCG 28228 29 100.0 32 ............................. GCTGGACGTCTCATGGACCTGATGGAGGCCCG 28167 29 96.6 32 ............................T GGCCGGAGCTGGGCCAGCGGTTGCCCGCGGCC 28106 29 100.0 32 ............................. GTGGAGCACGTCATCGCCGGCCTGCTCCCGGA 28045 29 100.0 32 ............................. CGCACCGCCTCACTCGGCAACGTGGAGCTGTC 27984 29 100.0 32 ............................. CAGCAGCGGAGACCCAGCCGTGATCGCCCTGC 27923 29 100.0 32 ............................. GCGGCGGTATCGACCTCGGCAACTACCCCGCG 27862 29 100.0 32 ............................. CCCGTCCGCGAGGCCATCGGCCCCGACGCCGT 27801 29 100.0 32 ............................. CCGGCTGGCCATCGGGCCGGTGGCGATCTGTG 27740 29 100.0 32 ............................. CACCGCCCGCCGGTTTCCCGGGGCCGCTCCGG 27679 29 96.6 32 ...........................T. TCGACCTTGTTGGCGTGTTCCACAACGAGAAC 27618 29 100.0 32 ............................. GCGTCCGCCGCGGCGCTGTTCCCAGGGCTCAC 27557 29 100.0 32 ............................. GGCTTCGCACCCACGATCGACCCGGAGCAGGA 27496 29 96.6 32 ...........T................. ACGAGGTGGTTGAGCTGGCCACCACAGGCGCC 27435 29 100.0 32 ............................. TTCACGTGGGTGGTGGTCGACACCCCACCTGG 27374 29 100.0 32 ............................. CCATGTGGCCAGCGCCTCCTCCACGATCTCCT 27313 28 96.6 32 .....................-....... CCACCGGCGGGGGATGGAAACCTCGGACCGCT 27253 29 100.0 32 ............................. GTGTGTCGCATGTCGTGCGACTTGCCCGATGA 27192 29 100.0 32 ............................. AACTACTCGTGTTCCTCTGCGGCTTCGTCGCC 27131 28 96.6 32 .....................-....... TACGGCCAGACCTTGTCGCCGTGGACGCCCTT 27071 29 100.0 32 ............................. GACGTCATCGCCCGGCTCCACGCGGCCGGCGC TGGG [27051] 27006 29 100.0 32 ............................. TAGGCGCCGGCCGCTCTTGATCCCAAAACGAA 26945 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GACATGGTCCACCTCTGGGACCCCGACCTCGGCGCCCTGCCCGCCGGCGTCAACTACAGCAACGACACCCCGGCCGCCGGCAACGACACTGACGCTCCGAGGCCCAGCCCGCCGGCCGGCACCATCGACAACGGCGACCTCGAGGACGACGACGTTCTCATCAACCTGGGCGACCCATGGCCTCAATGATCGTCATCTCGACCACCGCGGTCCCCGACCACGTCCGTGGCGCGCTCAGCCGCTGGCTCATCGAACCCACCGCCGGCCTGTACGTCGGCACCGTCTCCGCCCGGGTCCGCGACGAACTCTGGAACGCCGTCGCCGAGAGCGTCGCCGACGGCGCCGCCGTCTGCATCCACCCCGCCGACACCGAACAGGGCTTCAACATCAGAACCGCCGGCGAACGCCGCCGCCACGTCGTCGACTACGACGGCCTCCAACTCATCGCCCTCAAATCACAACAAACGCAGGAGCCCTCCTAAAAGACCAGGTCAGGAAGT # Right flank : GACTGGCAGCCTTGCGGATTCGACTGTTGCGAGTTCTTCCGGGGTCAGGTCGATGCTGGTGGGCTGGTTAGTGCGGCCAGTGTCTGGCGGCGGGCCTGCTCGGGGTCGGCGCCGAGGCGGGTGAGCAGTTCGTTGCCGCCTCGGGTGTCCTCGCCGAGCAGGGCAAGCAGTAGGTGTGCGGTATCGAGATGGTCGTGGCTGTGTGTCAGGGCTTGCCGCGCCGCTCGTTCGAGGACACCTCGTGCGCGGGGGGTGAACGGAAGATGCCGGCCGGGTTCGGTCGCGCTGTCGCCGCCGAGTTCCTCACCGAGTTCTTCGGCTAGGACCCGGGTGTTGTCGAGGGTGACGCCCAACGAGCGCAGGGTCGCACTCGTGTGCCCGGTTTCCTCGTGGAGCAGGCCGAGCAGGAGGTGTTCCGTCCGGATCGCGTTGTGGTGGAGCCGGTGGGCTTCCTCCTGGGAGAGTTCGATCACGCGACGGGCTTCCTGGGTGAACTTCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 38028-39765 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADGX01000079.1 Frankia sp. EUN1f ctg00346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38028 29 100.0 32 ............................. GGTGGGGACTCGTGGGGCCGGGGCGGCTACCG 38089 29 100.0 32 ............................. AAGAACGCCGTGTTCTATGGCGGTGACGATGC 38150 29 100.0 32 ............................. CTGCCCGGCTACTTCGTGGCCGGGTGGAACTG 38211 29 100.0 32 ............................. GATCTCCAGCCGCACCTGGCGGCTGCCGAGCC 38272 29 100.0 32 ............................. CACGCGCTCGACGCCATCACCGGCATCGGCCC 38333 29 100.0 32 ............................. CCGCCCTTGATCAGGTCGACGGTCCGGTCGGC 38394 29 100.0 32 ............................. GGCAAGGTTCAGGACCGGCGACTCGCACGCCG 38455 29 100.0 32 ............................. TACGAGACCTTGCGCCGGAACCGTGGCGGAGA 38516 29 100.0 32 ............................. TGCCTGCGGCCGGCCGCATCCGCCGGGACGTG 38577 29 100.0 32 ............................. CAGACGTGGCAGGACGTCCGCAACTCGCTGGT 38638 29 100.0 32 ............................. AATCCGTCCATCGGCCTCTACGGGGTGATGCA 38699 29 100.0 32 ............................. CGGAGTACCACACCGAGTTCGGGCGGCACGCG 38760 29 100.0 32 ............................. GGGGCGGACGGGGACGCTGAACCGGTCGCCCA 38821 29 100.0 32 ............................. GAGGCCTCGCCGTGGTCATCTCCGTCCCGAAC 38882 29 100.0 32 ............................. GGTTCGGGCGATGCGGCCTTGTGCGTTCAGTC 38943 29 100.0 32 ............................. TTCGGCACCGGAGCATCTGATTTCGGCGGCGA 39004 29 100.0 32 ............................. GGCAAGCCCAAGGGCCGGACCGCGATGTACGT 39065 29 100.0 32 ............................. GGAGTTGGCCGGCCCGCACGGGCGGATTGTCG 39126 29 96.6 32 .................C........... CGGACCCCGTAACGGACGACGAAACGGCACCC 39187 29 100.0 32 ............................. GCCTGGCCGCCCTGTACGCCCGGTACTACGAA 39248 29 100.0 32 ............................. TCCGCCGATCTGGGTGAGTGCTGTCATCAGCG 39309 29 100.0 32 ............................. TCCACGCTGATCACCAACCTGGCAACCATTGC 39370 29 100.0 32 ............................. TTCGTCTGGGTCGGATCGGTGAACCCCGGGTT 39431 29 100.0 32 ............................. GTTTCGGGCCGGCGCAGGCCCGATGGTCACAG 39492 29 100.0 32 ............................. ACGAACTTCCGGAGAGCTTGCTCCGCCGCACT 39553 29 100.0 32 ............................. AATGGCGTGACACAGCGCGCGGCGTCGATGCC 39614 29 100.0 33 ............................. CCGCCGAAGCCCAAGAAGCCGCTCGCAGGCCAT 39676 29 96.6 32 ..........T.................. TGGACATCAGCGGGCAGACAAAGGCAGGTGAG 39737 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : CCGCTGAGAGGCCTCATCATGACGGAACCGGGCCGACGCGCCGGCGGTCGTATAGCCCCTCAGCTCGGCAAACGCCTCCTCCACCTGCATCTGAAAACCCGGAGTAATCTTGCCGATATCGTGCAACGCGGCCCAGAAAGCAACCAGGCGACCGGCATCCTCCACGGACGTCCCCAACTCGCGGGCCACCGTGAGCCGCGCGGACTCCGGCACCATGCCACGCCAGAGCACCTCGACCGCCGCACCGGTATCAACCAAATGGCAGACCACTGGATACGGCCGTGGCAGCGAACCGAACTTCCCCCAGAGCCTCAGGTCCACACCTTGACGGCCCGCGTCGGCAGCGAAAGCACTTCCATGATCTCCCCCAAGATCCATCCTGGGAGCGTAGTTCATTGCCAGACAGCAACTGCCGGGCGGCATCCGTCGGTCAAGGCGGCGTGGCGTCCGAGGAAACACAACAGATGCAGTAGGCGGTATAAAAGGCCTGGTCAGTAAGT # Right flank : GAGGAGGTCACCGGCCAGCCGCCCGCGCAGCCGTCCTCCCCACGCCCGTGGGGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //