Array 1 53753-53304 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISX01000063.1 Hafnia alvei strain PCM_1221 846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53752 28 100.0 32 ............................ GTTTGCAGCACGCTCATTGCGCTGTCTACCGC 53692 28 100.0 32 ............................ AATACACGAGGTTCATATGGCAAAAGTAGCAG 53632 28 100.0 32 ............................ AGCCACAAATACGTGAACAGATTTACCCGGCA 53572 28 100.0 32 ............................ ATGTCCATCTACGGCGGCTTCGTAAAGTACAT 53512 28 100.0 33 ............................ CTACATCCGAGAGCGTGACTCAGCAGAGCCATG 53451 28 100.0 32 ............................ TTGCCGTCGAGCTGCATCCCCTCGCCTTGACT 53391 28 100.0 32 ............................ AATTCAAGTAACACGTGGAGATCAACCGACAT 53331 28 78.6 0 ....................A.A.TTCC | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAAGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAAAAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : TCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGCTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCTGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAACTATGCACTCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 162649-163638 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISX01000068.1 Hafnia alvei strain PCM_1221 853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162649 28 100.0 32 ............................ GCCTTGCAACGGCAATCGACAAGCTACCCATT 162709 28 100.0 32 ............................ GGGATGATGTATTTTCAAAACATTGAAACCGA 162769 28 100.0 32 ............................ TGCGTAAGCGCTGAACCGTCGGCCATCAATGA 162829 28 100.0 32 ............................ ATTAGGCACGTCGTATGTAGAGTTAGGCATCA 162889 28 100.0 32 ............................ CATTCAAGAGCCCGCCGCGTGCGGGTTTTTTT 162949 28 100.0 33 ............................ GCTAAAAAAGCAATAATAATATGTTCCATTTAA 163010 28 100.0 32 ............................ TTCATTACTAGTAATCGGGTGATTCTTTCTGT 163070 28 100.0 33 ............................ GTGCGTTAGAAGGTAATCGGTACTGCCGACTAA 163131 28 100.0 32 ............................ TGCAATAATATATTTTTTAAACTCTGCAACGC 163191 28 100.0 32 ............................ CGCAGAATTCGCCTCCGCTGAATTTATCTAAT 163251 28 100.0 32 ............................ TCGCAACAAGGACTACAGATGACAGACGAACG 163311 28 100.0 32 ............................ GTCAGGGAAAAGAAAATCTTTGCCATAAATTG 163371 28 100.0 32 ............................ ATCCGGCGCAGCTTTGCGAAGCTTACATAACT 163431 28 100.0 32 ............................ TGAATCCATTAGGAATTTCTGAGTAGCCTTCA 163491 28 100.0 32 ............................ ACAAATACAACTGCGGCAGCATTTACGGCAAA 163551 28 100.0 32 ............................ ACTACACGCAACGGATCATATCAGGAGGAATC 163611 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ACTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGCTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACGCCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 232186-233235 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISX01000068.1 Hafnia alvei strain PCM_1221 853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 232186 28 100.0 32 ............................ TGAATGCCGGCGGCGATAAAACGGGTTGCCGC 232246 28 100.0 33 ............................ TTGGTTCACAGGCCGCGAACTAGCGATATCACA 232307 28 100.0 32 ............................ AGAAGGATAGCCATAAGGCTGTATATCATTAT 232367 28 100.0 32 ............................ AACTCCATGGACAATCAGCTTAAAAAGCTAAA 232427 28 100.0 32 ............................ AGTTTATGACGCAACAGCAACAGCGTGGTTTG 232487 28 100.0 32 ............................ CATTCGGGGTAGAGCCGTTGCTGGCAGGTCAA 232547 28 100.0 32 ............................ GTATGCAAGTCCTTTGCTATTCCCAGTAAACG 232607 28 100.0 32 ............................ AACTGGTTTGCTGACACAGTCCATGTCGGGGT 232667 28 100.0 32 ............................ TATCACAACGTTCTATACGCCATGCTTATTCA 232727 28 100.0 32 ............................ TTCTCATCACTGCCCTCGTCAGCAGGATCAAA 232787 28 100.0 32 ............................ ACGAGTTTAGCGCAGCGGATACGCTAGCAGAA 232847 28 100.0 32 ............................ ACGAGTTTAGCGCAGCGGATACGCTAGCAGAA 232907 28 100.0 32 ............................ TTATGAGCAAGTGTACTTGCTAAATCAGCAGC 232967 28 100.0 32 ............................ TCATTTATACGCCAGCTGATGGCGATATTTTT 233027 28 100.0 32 ............................ TGTATGCACTTCTGAAAATGCCCGTAGCAAGC 233087 28 100.0 32 ............................ CAATATTCCATGGGCTTGTGTTGGCGTCCCAT 233147 28 100.0 32 ............................ ATCAGGTAACACCGGTTCCATGCTATTACCCC 233207 28 92.9 0 .....................A..A... | T [233227] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGTAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGAGATTAGATGAGCTGGAAGCGTTAATCTGCCCCCAACTTTCCTGTGAGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCTTTTTTTTCGCCTATTTATAACCCTTTAATTTTATGTGAGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : ACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGCCTCCGATCAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATTAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //