Array 1 1152876-1151629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIFP010000001.1 Gordonia humi strain DSM 45298 Ga0104626_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1152875 28 100.0 33 ............................ CCCTGAAACGGTGGGGTTCGGGAGACTTCGACG 1152814 28 100.0 33 ............................ CTCGACGTGACGACTGCCCCCAGTGATGTCGTG 1152753 28 100.0 33 ............................ TATGACGCGATAGAGAATGTCTATCGCACAGAA 1152692 28 100.0 33 ............................ GAGTTCGGAGAGGTGTCGGCGGACAGCTTCGTC 1152631 28 100.0 33 ............................ CGTGATCGACCCGGGTTGACCGTCGACGGCGAC 1152570 28 100.0 33 ............................ CGGAGCCTCGTCCGGGCCGGTCAAAGTGAGCAC 1152509 28 100.0 33 ............................ CGATCAAAGATCAACTCTTCAATCTCAGTTTGG 1152448 28 100.0 33 ............................ CCGACGCCCATATAACCCGACTGCCACATCCCA 1152387 28 100.0 33 ............................ CAACGACTGCGTCGCCGAGACGAGACAGATGGA 1152326 28 100.0 33 ............................ GTCGACGTTGCCGTTGCAGGGCGCGTCGGCGTG 1152265 28 100.0 33 ............................ GGACGACCAGCGGCCGGCGCTCGGCGGGCGGCG 1152204 28 96.4 33 .................A.......... GTCTTCCTTCTCCCGGCGATTCTCGATGTCGCC 1152143 28 100.0 33 ............................ CGGCGGCACCATTTTCGACGGCATGACGCGCAC 1152082 28 100.0 33 ............................ CAGACTCGCTCCGGCGACCTTGTCTGCAGCGAC 1152021 28 100.0 33 ............................ CGATCCAGCAGTAGAAGCGGCACGGCGGGCATG 1151960 28 100.0 33 ............................ CCATCGTCAGCACGCGCCCAGATGAAATCCCCC 1151899 27 92.9 33 ...........-.............A.. TCAGCAGGACAGACTGCGTCGTCTCGCGGTGCT 1151839 28 92.9 33 ............G............A.. CATCAAGGACGGCAAGGACGTCGGCGACGGCTA 1151778 28 96.4 33 ..................A......... CATCATGCTCGGTATCGGATCGGAGTCCGTCGC 1151717 28 100.0 33 ............................ GTTCACGGCGGTCTCGACACCGGTCGAGAATCC 1151656 28 96.4 0 ..T......................... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.8 33 GTCCCCTCCGCGCACGCGGGGGTTGGCC # Left flank : AGGTCGCTGTGGAAGCGCTGCAGGCGCCGGCAGAAGAGGCCGTGAAAGCTCTTCTCGACCCCGATGTCGGTTACACATACACGAACTGCGACGGCGGGTTCGACCGCTCCACAGTTTCCAATCCCCTTGTCAACGGTATCGGCGAACACGGCCGCCGGAGCACTCGAGGAGTGCTGGCACCGCTTGTCATGGAGGGATTCGCTGTGCTCGGCGCACCTCCGCGCGGGGGCCACGGTGTCCATGACCGCCAGTTGACGCTTCCACTTCCGACGCGGTTCACCGACCTACCCGAACTCCGCGCACTCCTCCTGGTGAGCGCTGGGATTCGGATTCCCCGCAGCTGGAGTTGGAAGTCGATCAGCTGCGATTGGCGGCTCGTCGCGACCAAAACCATGCTGAACAAGTACGACGCACATTGGGACGCGACGTTCGCGCAGCGTTCATCGTAGAAAGTGAACGTAGATCGGGTTGCGCCGACGGAAACGTGCAGGTCAAGAAGT # Right flank : CATCGTGGTCGCGGAGAAGGGCTTAGACAACCGTGCCTGGTCCGCTCCACTCATCCGGTGTCGGTCTTCAGCCACGCCTCTACCCCCTGACACACGCCTCCCGCGATCGGTCGTTCAATCGCCCGACACGAGCCGACGGATGGTCGCCCTCGCTAACGTCCCCCGAACATCCGACGACATACCCACCAGGAAGAAGCTCGACGAGACTCGATCCGCGAGGAGCAGGCCATGCCGATCCGATCAACAGCTCGACACCCGATCCGACTTCGCGCTGCCGGAGCAGCAGCCGCCTGTGCACTGGCGGCGGTCACCGCCGGAGCGGTAGGCGGCGGCCAGGCGCATGCGGCCGATGCGAAGGAGTACCCGCTCCGCGACTGCATCAACATCAGCCCGAACATCGTCGATCTGCCGTATCTGCCGCACCGGGCGATCGTGTCCGAGTACGCGGGCACGACGTACATCCAGATCGACTACGGAAGTCTGTGGGTCGGTGTCGGATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCTCCGCGCACGCGGGGGTTGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1161553-1160930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIFP010000001.1 Gordonia humi strain DSM 45298 Ga0104626_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================= ================== 1161552 30 100.0 31 .............................. CCCACTTGCCCGGTGTCAGAATCCACGTGTG 1161491 30 93.3 31 ............................GC TCACCCACACACACGTCCACCAATCGGTTAA 1161430 30 96.7 31 .............................C GAGCGATCGAAGAGTTCCCCGGTCGGATCGG 1161369 30 100.0 31 .............................. CTCGGCTGGGAACGCACCTACCTCAGAGCCT 1161308 30 93.3 31 ..................T..........C AGGCGACCTCGGCCCCGTTCGGCTCGGATGC 1161247 30 86.7 31 .C.......................G..TC TCCGGCAGCAACGGCGTGTGCTGCGGGTCGT GG [1161223] 1161184 30 83.3 31 ..........T...T..........G.T.G CGACGAGCTTCCCGCCGCGGGCACCGGTCGC 1161123 29 83.3 17 ........-......A.........G.G.G GGATGGCTTCAAGCCTC C [1161101] Deletion [1161078] 1161076 30 80.0 87 .........A.......CA...C..G...G CGCGACCAGCGATCACCGTGCGCTTGGCCGCGACCCCGTGCATGCGAGATAGGTCCAACCCGCCGATGGCCGAGATACTCGAGGCCA 1160959 30 73.3 0 CG............T..C.....CCA...G | ========== ====== ====== ====== ============================== ======================================================================================= ================== 10 30 89.0 36 GTCTTCCCCGCGCACGCGGGGGTTGTCCCA # Left flank : CGCCTACGTCTTCTCCTGGTGCGACGCCAACCCTGGCAAGGCGAGGCTCCTGCTAACCTTCGACGAGCGCGAGATCGGCCGTCGCGCGCCGGAGGCCGTCACTCAGGAGCTCCGCGATCACAACGACGCGGCCCGCCGCTCCGTCGCCGACTGGACTCTCCGCCACTTCGGCTCCACTGACACGGAGCACTTCGACCGCGCGGTGTGGGCCCTCGTCGACCTGCCCTACGGCGCCGTGCGTCGACATCTGCCCGACGGGCGGCCTCGCGCCTGGCTGCGCGAGGCCGTAGTCGAGTCGGCGCACCGTGCGATCGGGCAGCCGCGCTCTACCCGCTGATTCGCCGTCGGCGATCAAACGTGGGATCACCCCGGCGCGAGTCAGTGGGTAACGTGCCGTATGTCGGCAATTCGTCACACCGCAATGCCTATCGGCTCGCCGATTCCTCGAGAAAGTGAATGTGAACCTACATTTCGGCGCGAATCACCCCAGGTCAAGAAGT # Right flank : GAGGCCTCCGCCAACCGTGCTCCCCCACAGGTTGGCGTCAGAGACAAGCCCACAAGAAACTTCCGATCGACCCGGGCACTCCACCAGCAGCAATTAGAGTGAAACGATCGATAACGACATTTCGCAGGATGGTCCCGCGGACCGCGACTCCGACGCACTGACTTCATATCTCAGCGCTGTCGCCCGATCACTCGCCGCATCACCGACTGAGATCCACGCAATACGTCGGTGGCAGGCGATGGATCGCTTCTACCAACGCGTACAGAACGTCGAACGTACGGACTCCGACGACGCGGAAGCGGAAGAGGTCCTCGACGTCCTCGATGCGTTGATCGCTCGGAGCCCCCTTTCTCGTCCCATCACGGTCTGGCGTGGCCTTCGCAACGTCGAGACAGTGTTTGGCACGAACCTGGATATCACCTCGCTGCAAGGACGGATCGTCGATACGCAAGGCTTGATGGCCACGAGCACGTCACGCACCGCTGCAATCGACTTCACTT # Questionable array : NO Score: 4.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.62, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTTGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //