Array 1 17567-18084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYF010000024.1 Gemella palaticanis strain CIP 106318 NODE_24_length_18122_cov_34.297360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17567 29 69.0 32 .TA.ATT........AG.......CT... ATCTAGTAAATCTATGGTATTGCCCCACATAT 17628 29 82.8 32 G..............AG.......CT... TTCAGCATTGAAAGAAACAGGCTCTAACATAC 17689 29 100.0 32 ............................. AAATCAGGATTCATTCCACTTTCACGCATAAA 17750 29 100.0 33 ............................. TCAAAACCTGTAACGAGTTTATCAGTTTCACTT 17812 29 100.0 32 ............................. CGTTATTCATAATTTCTACTCCTTAATCTCTA 17873 29 100.0 32 ............................. TAAAAGTGCCTAAAAAGTGCCTAGGTTATCTA 17934 29 96.6 32 G............................ CATCGTAAAAAATGTGAGAGTATATAAAGGAG 17995 29 100.0 32 ............................. TGATTTCAACTCTATATCACTTAATACATCTT 18056 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================= ================== 9 29 93.9 32 AGGTTCACCCCCGCACACGCGGGAACAAT # Left flank : CAAGGAAGTCGCAACAATCAAGGTGTTACGACTTTTTGAGAAATATTTAATCAATTATTTAAGACGTTTGGCAGAACGTCTTTTTTTATTTCTCTTTTTACTATTAAAATATTTGTAAACTTTTAAAATTATATAAAATAACTTTTCTAATTTATCTATATTTAAAATAATAAACATAAAATAAAATAAATAATCTTTCATAATTCCCACCCCCTCACTACCTAAATTTTAGTAGCGACCTTGTCGGGAGGTTGTACCTTTATCGGTACGTTTATATAGTAGCATATTGTCCAATATCTATCTATACTTTTCTTTAATTTTATTTAAAAATAGTATTATCTCATCACACTCTGGAACAGAGTGTGAAACAGAAAGTTTTCTGAAAGAAAAGTTGCGTAGTTTCTCCTCCGCAAGGGTTAATAGGTGTTGGGAATTTGATAAAATCTTCCAATGCCATTAACCTACTGCGTCTTTGTTTCTTGCCTAACAACTATATTATA # Right flank : GGTTTCGAAGTTTTTTCACAATTTCAAATACAAAGGTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTTCACCCCCGCACACGCGGGAACAAT # Alternate repeat : GGGTTCACCCCCGCACACGCGGGAACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 37-1957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYF010000029.1 Gemella palaticanis strain CIP 106318 NODE_29_length_14891_cov_50.120699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37 28 100.0 33 ............................ TACTAGAGCTAGTTGGATAGACGGAGAACTTAG 98 28 100.0 33 ............................ TGATTTCAACTCTATATCACTTAATACATCTTG 159 28 100.0 34 ............................ GGTTTCGAAGTTTTTTCACAATTTCAAATACAAA 221 28 100.0 33 ............................ GATATAAATAGAGAAAAAGTTTATACACGAACA 282 28 100.0 33 ............................ CACTTCTTACAACTTCAACGTGTCCAATATTAG 343 28 100.0 33 ............................ GTAATTTGTGTTCCGTTAATATCTCCATGTCTA 404 28 100.0 33 ............................ GGTCACAATATGCAACTGGCAAACAAAATGATA 465 28 100.0 33 ............................ TATTAGCTCTAATTCTTCACTATATGCCACTTG 526 28 100.0 33 ............................ TATCAGAAGTTTTGGAAACCAATAATTTACTTG 587 28 100.0 33 ............................ ATAGCGTTAGTAAATAAAAACTTAATATCTAAA 648 28 100.0 33 ............................ TACTAGAGCTAGTTGGATAGACGGAGAACTTAG 709 28 100.0 33 ............................ TGGAAAAACATTATTACCTAATACAGTAAATTA 770 28 100.0 33 ............................ TTAAGGAGTACTATTATGAATGAAGTAACTTTG 831 28 100.0 33 ............................ ATTATACATAACCCGATGGAAATTTAAATCAAA 892 28 100.0 33 ............................ TAAACGGAGTTTTTAGTCCTTATACAACATTAG 953 28 100.0 34 ............................ TGTAGAAGAATATAACAAAATATATAAAGAATTG 1015 28 100.0 33 ............................ GTTGGCATTTTAAACCAATTATTAGGTTGTGGG 1076 28 100.0 33 ............................ ATAGGTTAAATTTTAAATCTGAATTACTATTCG 1137 28 100.0 33 ............................ TTATGTAATACTCTTTAATTTCAGGTTCATAAG 1198 28 100.0 33 ............................ ATTATAATCATTGTAACAGCTTCAATAACTAAA 1259 28 100.0 33 ............................ TAAACGGAGTTTTTAGCCCTTATACAACATTAG 1320 28 100.0 33 ............................ CAATTCATCAAAATAACCACTATTTATACATGA 1381 28 100.0 33 ............................ CCCCCTACTAAATCATTTTCAGTTGCTTCATTA 1442 28 100.0 33 ............................ CCGTTATATCTGTTCTATCTATTTCAACTGTAA 1503 28 100.0 33 ............................ ATTTCCATTAATAAAAAACCAAAATAAAATGTA 1564 28 100.0 33 ............................ TTATTACCTTGCATATAATCGGCAGTTCTATCA 1625 28 100.0 33 ............................ AATTGGTACAGACTGGAATTGGCAAAGTGTAGG 1686 28 100.0 33 ............................ TATTCAAGAAGTGGAAACGCTAACAATGTTGTA 1747 28 100.0 33 ............................ TAAAAAATGTTTTGATACTAGAATTTTGTTTAA 1808 28 100.0 33 ............................ TAATAATTACACAACCTATGCACAAAATGTTGG 1869 28 100.0 33 ............................ TTGATTGTTAAAACTTTGTTGTTGGGCGTCAAG 1930 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 32 28 100.0 33 GGTTCACCCCCGCACACGCGGGAACAAT # Left flank : AATATAGCGTTAGTAAATAAAAACTTAATATCTAAAG # Right flank : TACTTGAAAATTGCTATTATAAAGCTATTTCTTATTTAAACCCCTCTGAAAATTATTTAGTTTCTTCGATAACTCATACATAACCTTTGTATCATCCAGTGCCCTATGAATTAAATTTTTATCAATATCATAATGTTTTAATATGTGCTCTAGTTTATAACTATCCAAAAACATATTATCATTTTTTACATATTTCAATAAATCATAGTTTTTATTATTTAATCTTGATAATCCCATTTTATCTAAATTATTATTTAAAAATTTTATATCAAAATTTATGTTATATCCGACTAATATATCATCTCCAATAAAATCTAAAAAATTTATTAAACTTTCTTTTAAATCCTCACCTTGCTCATTCAATAAATCGTTAGTTATTCCAGTTAATTTAGTTATATTGAGTGGTAATTTTTTATTATATTTTATTAAACTGCTAAATTCTGCTACTTCACCATCAAATACTTTTAATGCTGCTATCTCTATAATATCATTTGTATTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCACCCCCGCACACGCGGGAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //