Array 1 453574-453781 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNVG01000001.1 Klebsiella oxytoca strain 722058-16 722058-16_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 453574 28 100.0 32 ............................ TTTGCCAGCGTCTTCAATAGTTGCACAGCATT 453634 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 453694 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 453754 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCAGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGTGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGTGTTTTCTGCCTCACCCTGGCCACATCTTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAATAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 467041-469172 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNVG01000001.1 Klebsiella oxytoca strain 722058-16 722058-16_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 467041 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 467101 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 467161 28 100.0 32 ............................ AGCGTCTTCGCGCGACCGATAAGTTGTTCGTT 467221 28 100.0 32 ............................ TGAATCAGGTCAGGAAATACGCGGCACTGGCC 467281 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 467342 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 467402 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 467463 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 467523 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 467583 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 467643 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 467703 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 467763 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 467823 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 467883 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 467943 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 468003 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 468063 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 468123 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 468183 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 468243 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 468303 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 468363 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 468423 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 468484 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 468544 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 468604 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 468664 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 468724 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 468784 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 468844 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 468905 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 468965 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 469025 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 469085 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 469145 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 477602-478530 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNVG01000001.1 Klebsiella oxytoca strain 722058-16 722058-16_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 477602 28 100.0 32 ............................ TATATCGCTGGGCCTACGAACGTGGTTTCGTT 477662 28 100.0 32 ............................ GCGCGCTCAGCTCGATGAAGCAATCAGCAACC 477722 28 100.0 32 ............................ AGATGGCATCGCAAGGCCGGTATCAGGGATTA 477782 28 100.0 32 ............................ ATCAGTTATGACCGGGCAACCGGCGCGGTCGA 477842 28 100.0 32 ............................ TTAAGTTTTCTGCCGCTACATTGTATTCACGC 477902 28 100.0 32 ............................ TCACATAGAGCCAGCCACCGCCGAAGAAGCAC 477962 28 100.0 32 ............................ TGCAGGTGGTTTACATGGCGAGGATTGCGGCC 478022 28 100.0 32 ............................ TCAAATCATCGACACCGGCGCTTATGATGGAA 478082 28 100.0 32 ............................ GCTTTCGCGGCATATCCTCGCCGTCAAAAAGA 478142 28 100.0 32 ............................ TTACGAAAAATTGCCAAAAGATGTTCGTGAAG 478202 28 100.0 32 ............................ CAGAAACAATGTGATGGCGCTTGGTCTGCCGC 478262 28 100.0 33 ............................ TTGCCATCAGGCGCATACACCGGCGGGGATCGG 478323 28 100.0 32 ............................ ATGATACAGGCATATGAGGCCGTTAAGCCCAC 478383 28 100.0 32 ............................ TACATCGGGGTCAGTGTCGCCAATGGTTGGTG 478443 28 100.0 32 ............................ TTCACGGCACGCCATGCCGATTCCAGATATCC 478503 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGTAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATTGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCACTATCTTATTGATATTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTAAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGCTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAACGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAGTTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //