Array 1 311193-312197 **** Predicted by CRISPRDetect 2.4 *** >NC_011740.1 Escherichia fergusonii ATCC 35469, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 311193 29 100.0 32 ............................. TTTTCGAAACCGGCACCCCCTGCGCCTCCGTC 311254 29 100.0 32 ............................. GAATAAATGATCATGACACAGCGTTGCACAAT 311315 29 100.0 32 ............................. GTCCTACCTGTTGGCGATTTCAGCATCATCAT 311376 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 311437 29 100.0 32 ............................. TTGCAAAGTGGAACTCGGCGCAGAACGTTATG 311498 29 100.0 32 ............................. CCCGCCGCACCGGATTCCTGAACTAACTTCTT 311559 29 100.0 32 ............................. CTACAAAAAACCCATCAGGCAATTCAACGGCA 311620 29 100.0 32 ............................. GGGTATTTTGGTATTTTGCCTGGCGCTAAAAC 311681 29 100.0 32 ............................. TTGGCGCGGATCTACAACCCTGACTGACGGGG 311742 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTGTTGAGGCGCGTAA 311803 29 100.0 32 ............................. GCTGAAAAATTGGGGCATGAACTGGATGTTGC 311864 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 311925 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 311986 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 312047 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 312108 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 312169 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTATCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 326990-328178 **** Predicted by CRISPRDetect 2.4 *** >NC_011740.1 Escherichia fergusonii ATCC 35469, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 326990 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 327051 29 100.0 32 ............................. AATCAATAAAACAATTTAGAAATATAATGGGG 327112 29 100.0 32 ............................. GCAATGCGTCGTGCGGATTCTCACGTCATTCC 327173 29 100.0 32 ............................. CCTGTTGAAACAGATATTCCCTACGCGCTGGT 327234 29 100.0 32 ............................. AGGCCGCAGTTGTACTCTTGGTGCTGCTTCCT 327295 29 100.0 32 ............................. CGCCTGAAATCATCGTTCTGTAGTTGTCTAGC 327356 29 100.0 32 ............................. CCTATCAGAATTGGCGGTGAACTTTTATTTGT 327417 29 100.0 32 ............................. CGCAGCAGATGCAGGCAGCACAGCAGCAGCAA 327478 29 100.0 32 ............................. TCTCTCATCTGGTCAGGCATTGGCCCTTGCAT 327539 29 100.0 32 ............................. GTCACTTCGTTTTTATCAACGGCCAGCACGGC 327600 29 100.0 32 ............................. CATGCATTGCTCAGCCAGTTTTATGGCAGCCC 327661 29 100.0 33 ............................. CGGTTATCACAGAGCTGAAACAGAACTGGAAAA 327723 29 100.0 32 ............................. GCAAACAGAACGGGCACGTAAAATGGAATGAC 327784 29 100.0 32 ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 327845 29 100.0 32 ............................. TAATAGCCGCCCTCTTTCTGATTCTCTTCAAC 327906 29 100.0 32 ............................. GCTGTAAACCTTGCTGTAAAAGGCCATCGTTT 327967 29 100.0 32 ............................. GATGGCTGTCATAAAAATTTCTCCGCTATTTG 328028 29 100.0 32 ............................. CATTACGTAAAAGCGTAGAAGGCGAAAATCAC 328089 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 328150 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATATTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCATCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGTCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //