Array 1 144109-146121 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBYR01000003.1 Halomonas sp. CSM-2 Contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 144109 28 100.0 32 ............................ TGGAAGATGGTCGATATACGCAGCAGGTCTAC 144169 28 100.0 32 ............................ GCTCAGGCAACTACGCCGGTGCCGACGAGCCG 144229 28 100.0 32 ............................ AGTCAGGAAACCAGTAATCAGGTTGCGGCAGG 144289 28 100.0 32 ............................ GACACCAGCGCATGAGCGAGTCAGTTGCCCAG 144349 28 100.0 32 ............................ CATCAGAATCGCTCCTTGAGGTTATTGGCCGC 144409 28 100.0 32 ............................ GACCGGCTGGCTGGCAGTGCTTTCCCGCCATT 144469 28 100.0 32 ............................ AGAAGCCAGCACGGCCACACGATGAACGCTAT 144529 28 100.0 32 ............................ TTCTCAGGGTTGGCGAATTGCTTGCCTTCCAT 144589 28 100.0 32 ............................ CGAGCGAGTTTCGCACAGCACCGAAGCGCAAA 144649 28 100.0 32 ............................ TCAAAGTCGGGCGTCTCCATTTTCTTGATCTG 144709 28 100.0 32 ............................ TTGCCACAGGTCAGCAAAGCCGTCATCGAGGC 144769 28 100.0 32 ............................ GGCATGACAGCGCAGCGGTGACAGCGACCAGC 144829 28 100.0 32 ............................ CATGCCTGAATGTCGACTTCTCGCCAGCGCGA 144889 28 100.0 32 ............................ TATCAGCTATGCCAGAAGGAGCAACACTAACA 144949 28 100.0 32 ............................ GGCAATTGCCCGGTATCGATGCGCTCATCAAG 145009 28 100.0 32 ............................ AACGCCACCGACGCCGCGACCGAGCGTGACCG 145069 28 100.0 32 ............................ TTTCCAGGGTGGCTCCGTTTCGGCCAGCGTGA 145129 28 100.0 32 ............................ ATGCTGATCCCTTTATTGATCAATGCGGTTGA 145189 28 100.0 32 ............................ CGGTGCGCTCATGATATTTTTTAATCATAGGG 145249 28 100.0 32 ............................ TAGCCCCTTCGCCTTGCTCGGTTGCTGTGCCG 145309 28 100.0 32 ............................ TAGCCGCTGTGACTGAGGCGCGATTAACCGCC 145369 28 100.0 32 ............................ TTGGGCACAGCGGACTGGGCGGCGGCCGTGAC 145429 28 100.0 32 ............................ TCGTTGGCACCATCACGTCAGAGCTTCCGATG 145489 28 100.0 33 ............................ CTTGATCATTTCGTTCAACCGATCAACGCGGCG 145550 28 96.4 32 ......................T..... TGATAGTGGCATCGGGCGCCCTCCTGCGCCGT 145610 28 100.0 32 ............................ AACTAAAAGAGGCGGAAGCTGAAACTGCGGAT 145670 28 100.0 32 ............................ TTGATGAGCTGTGTGAAGGGCTTGGCGCTTAC 145730 28 100.0 32 ............................ GTGGAGCGGGATCTGTCCGCGATCATGAGCAG 145790 28 100.0 32 ............................ CAAGAGGCGGTTTCTTTTGCGCGGGAGGAAAG 145850 28 96.4 32 ............T............... ACGGCGGCAGGCCGTTATCAGTTTCTTTCGCG 145910 28 100.0 32 ............................ ATAATGCGCAGGAACTCGGCCCACTCGCCCGC 145970 28 89.3 32 ...C.......TG............... CAGATAATCAACACCACCAACAACGATTGAAT 146030 28 89.3 32 ...C.......TG............... GACCCCAAGCGCAATATCGAAAAGGCTATGGC 146090 28 89.3 0 ...C.....A...............G.. | T,AC,A [146110,146113,146116] ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.8 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGTTTGCAGCAGCTAATGAGTGCAAATTGGCTAATCGGCATGCGCGATCACACCCAGGTTAGTGACGTGCTTACGGTGCCTTCTAGTGCTAAGCATATCAACGTGGCGCGTAAGCAGTTCAATACGGGAAGCCCAAGCCGAGCCAAACGCTACGCCAAGCGGCATGACATCTCGGAAGACGAAGCGCGGCAAATTTACGCCAAATTGGCTGAACAGCGTATTGAGCTTCCTTTTGTACAGATCAATAGCCGCTCCACTCAGCAGCGTTTTAGCCTGTTTATTGAACATGGAAAACCGGCCGCTTCTGCAACGGAGGGCACGTTTAGCCATTACGGATTAAGTCCTAACGCTACGGTGCCCTGGTTTTGACCCTTTTTTTCACCATGAGAATAGGATGCCAATAATCAATCACTTAGCGGTATCGCTCAAAAAAGGGTGATACCGTTTTTTTCGGCCAAAGCTCTTTAACAATCAGCACATTAATTTTGATAAGCTCTA # Right flank : ATAAAACTCACTCCTCAGGACTCGGCTCCATAGCACGCTTGTCGTCAGGGAGACGGACGATGTCGCCTTTGTGGAGCTTGCCGTGGCTGTCCAGGCGCTGGCCCTGGGGGCCAATGATCGCTACCACCGGGCCGATGCTGACCGCTTCGTCTTCCTGGTAGCTTTGCACGTCGACTCGAACCGAACAGCCCTGGTAGCGGGCGGAGATGATATCACCGGTATGCGGTCTGGCGTCGTGGTTGGGATCCTGGGCGTAATGGTGCGCAACGCTGGCGCTGCCTGGCATATCCCATTCAATGTGCCGATGCATAGAAAACTCCTTCTTCGTGGTGCGTTGCAAGCAACAAAGATAAATATCGTTATATTAGCGTAGCTTACTTATTCGCTACTTTCGCCCTGGTTAGGCTGTCCGACGTGTTGAAACATGAAGTTAAGCGCTGCGGGCAGACTGGCCTGCCAGACTCTCCAGGTATGGCCGCCGGGGTAAAGGTCCATATGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //