Array 1 454318-457313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPNB01000001.1 Kineothrix alysoides strain KNHs209 CC90DRAFT_scf7180000000010_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 454318 28 100.0 33 ............................ CTGTCGCAATACTCTTCTTAAGTGTTTCCTGCG 454379 28 100.0 33 ............................ TACACCCTATTACTTGCATGGATGTACCAAAAT 454440 28 100.0 33 ............................ CATCCATGAGCAGAGAAAAACTTTTAAGGGAAA 454501 28 100.0 33 ............................ CAGTTGGATACTAACTCTAAAATGGTTATAGAG 454562 28 100.0 33 ............................ CATGATCGCATTCGGTGTTTACTCGGACGTAGC 454623 28 100.0 33 ............................ TGAAACAAATTTACCTGAAGAAGATGTATTGAA 454684 28 100.0 33 ............................ CCAAGGCTTTACATGCTCGTTGTACCATTTATA 454745 28 100.0 33 ............................ TACTGGCATTGCGGCTGATTGCATATTCCCTGA 454806 28 100.0 33 ............................ TAATGCAGAACGGTTCATTAAGAGACTGGAAGG 454867 28 100.0 33 ............................ TTTCCCATCATAGTTATTCAACGTGAAAACCAT 454928 28 100.0 33 ............................ CTGGAAACTGGCGCGAGTCTTGGCGCTCTCGGC 454989 28 100.0 33 ............................ TGGAGAGTATCAACAATAACGCTACGCCGGAAG 455050 28 100.0 33 ............................ TGCTAAAGCTTCAACTTTTGATGTAAGCTGTGC 455111 28 100.0 33 ............................ TTGTTCCATCTGTCAAAACGTTCAGTCCGTGTG 455172 28 100.0 33 ............................ TGAATGCAAGAATGAGCGATTTGGATGCCCTAG 455233 28 100.0 33 ............................ TGCAGGAAACGCTTAAGAGGAGTATAGCAACGG 455294 28 100.0 33 ............................ TGTCGGATATGCACTGCTGAAAGTACCATCCGC 455355 28 100.0 33 ............................ TCCATGCTTGCTGGTAGTAATCAGCAATCTTGT 455416 28 100.0 33 ............................ CGAAGCATTCCGCAAGCTCCCCACTGGAACAGC 455477 28 100.0 33 ............................ TCGAAAAAGGAACAATGAAAGTAACAAAAGATG 455538 28 100.0 33 ............................ TTGCATTTACAATCGTTGTTACCGTGGTCTTGA 455599 28 100.0 33 ............................ TTTTAAAGGTGATCCGTGATGGATCTGAGAACG 455660 28 100.0 33 ............................ TTGACGGTAGAGCAGTCAGAGAAGCAGCCATGA 455721 28 100.0 33 ............................ TGTCCCGGCTCGACATCTTGCCCGATACAATAC 455782 28 100.0 33 ............................ TATCATGTACTTCTGTTTCACAATAATTATCTT 455843 28 100.0 33 ............................ TCCGGACAACAATCGCATTCGCCTAATCCAGCA 455904 28 100.0 33 ............................ TAAGTTGCCCCACCACCATTTCCAGCTTTATAT 455965 28 100.0 33 ............................ TTCATTTTTATAACAGTTCAAGTCCATTTTAAT 456026 28 100.0 33 ............................ CGGGTTTATGTGGCTTCGATCAGATATAGGCAT 456087 28 100.0 33 ............................ ACAGGTATTGCAGACAGCCCCCAAACCAGCAAA 456148 28 100.0 33 ............................ TAAAATCCGCCACAAGATTTCCATCTATGGTCC 456209 28 100.0 33 ............................ CGCGCTCTTGCAGATATTCTCTGAGATAATGCA 456270 28 100.0 33 ............................ TACCAGCCTTTTTATTTTTGTAGACATCCACAA 456331 28 100.0 33 ............................ TCTCCGTTCTTTGCTTCCATGAAATCCATAGAT 456392 28 100.0 33 ............................ TAGTGGAAAAAGCTAAATGTAAATATTGTCAAT 456453 28 100.0 33 ............................ TATCACAAGAACTAATCAAAGGAGCAAGTATAC 456514 28 100.0 33 ............................ TCACCGGTGCCGCGCAGTTTCATATCCTCTTCA 456575 28 100.0 33 ............................ TATAATGCAACAATCAGAAAATATACACATACA 456636 28 100.0 33 ............................ TCTTAGGAGCAACATCATTCTTCCACCAGTCTG 456697 28 100.0 33 ............................ TACCGAATGGGTATCTCAAACGGCACAATGTAC 456758 28 100.0 33 ............................ TGTGAAAGTTGTGTATGCCATAGTGACCGCCTT 456819 28 100.0 33 ............................ TGCTGATAGTAGCAGTTGCAGGCTTAGTAGTCG 456880 28 100.0 33 ............................ TTGTGGCCTATTTGTGTCACGGAGAGGAAAAGC 456941 28 100.0 33 ............................ TAGATTATACGCAAATATATGCACAGTTCCATA 457002 28 100.0 33 ............................ TCCAAGCAATCCAGAGGATATTCGCATGCATGG 457063 28 100.0 33 ............................ TCCCCGTGGCGGCTTCCATTTCTTTCATCGTCT 457124 28 100.0 33 ............................ TGGTGATTTTCTCACGCAACAACTTACCAATCA 457185 28 89.3 73 ...C................GA...... TATCCTCCGCGACCAGACGCCCAAGCACCGGGGGTAATCCTTAGGGGATAAGGTGGGGCCATATATCGGTACC 457286 28 75.0 0 ...........A.GA.....G.GT.A.. | ========== ====== ====== ====== ============================ ========================================================================= ================== 49 28 99.3 34 GTGTTCCCCGCGTAGGCGGGAGTGATCC # Left flank : TCAGAGAAAGATCAGATTATTGAGATAGCTGCAATAAAAATGGAAGGCAATGAGATGATTGTTTTTCAGGAATTGGTTAAAATTGAAAAAGGACTTCAAAGAGAAATATCTGAGCTAACGGGAATTACGGATGAAATGCTTGCTAATGACGGGAAGGATATAGATGTCGTGCTTGATGAATTCTTGGATTTTGTGGGAAAGTCAATTCTAGTAGGATATAATGTAAAATTTGATATCAGTTTTCTTAATGCTGGGTTAAAAAAGAATGGTAATGCAGTATTGACAAATAAAACGATATGTCTTTTACAAGAGGCGAAAAGGAAACAGAAACTGCTACGAGATTATAAGCTAAGTACTGTTTTAAAGAAATACAATATAAGTACAGAAGGTTTGCATCGAGCATATGTAGATGTCAAGGCAGAATATGAATTAGCGGTAAAACTAAATATTTTTTGATACTGTAAGATAGGTGAATGGCGAGAAATCAAGGATTTTTAAGT # Right flank : CTTAAGAAAAATGATATCTCTAATATCATTACACCAGAAAAGGCAAATGATATTGGCGGACCAATAGACGGGTAAATCCCCATAAAAGTTTACTATTTATTGCCACTTCTGATGGTATAGGTAAAAGCAGATGTTACTGGGGAAATGATTAATCCAATTACATCATTTCATTCGTTAATGCCTTAATTTAGATATCATGACGACAATGCTGTACAATATATTAATAATACTATTGTTGAATTGGAATTAGATAGCAAGTTAACTGCATTTAAAGAAAAATAAAATATAATAATATATCCTTATCACAGTATTTAATTATATATTATAATGTGATAACAGTATTATTTTGCAATATACATCAATACACTAGTTCATTGTAATATAGATATTGTGAATAAAGTGGAGGCTGAAGAAGAGAAAATAGATAAGGTAGTAAGCTCTATATTTAGATGTTTCTGGTGATTTCAAAGCGGTTTTTAATAAGGCACGGGCAGTTATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGGCGGGAGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 673705-674791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPNB01000001.1 Kineothrix alysoides strain KNHs209 CC90DRAFT_scf7180000000010_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 673705 32 100.0 34 ................................ CTAATGGTAGCAGAATAATCTTTAAGGGAATGGA 673771 32 100.0 34 ................................ CATGACGAACTGAAAGCAAAGGGGGAACATGAAT 673837 32 100.0 33 ................................ CTGGCCCTCAAGGTGTTGCTGGCGTAAATGGTC 673902 32 100.0 34 ................................ TTCTTTCCAATTCCACCAGGATTAATATAGATTT 673968 32 100.0 34 ................................ CATGATAACTGTAGGGCGTACACTTACGTTGGGA 674034 32 100.0 34 ................................ CTCATTACATTTTTATCTCTTGTTAAAGATGCAT 674100 32 100.0 34 ................................ TAAAATAAAAATCGGTGTATCTCTTAATATTGCT 674166 32 100.0 33 ................................ CCTTGCCGTTATATGTATGTAAAAGGCTGCATT 674231 32 96.9 37 .C.............................. TTGCATTCATACCGGCTATCTGCGCTACCCACTGCAC 674300 32 100.0 35 ................................ CGTTGTATCAGTGTCAAGAGTAAACGCTTTGCCGG 674367 32 100.0 34 ................................ TAATATCTTATTTCTTAGAGCTTTTTTACCACCA 674433 32 100.0 35 ................................ GACATGACCTGCAAGACCTTAGGGGCATAGGCCAT 674500 32 100.0 35 ................................ AGTATGGACAATAAAACACCGACCAAAGTGCACAC 674567 32 100.0 34 ................................ CTTCGTGTCATAGGTGGAGGAACCGTAGTAGCAC 674633 32 100.0 33 ................................ TCGTTGACATGGTAACCGCAGGTGTAAGCCCTT 674698 30 90.6 33 .......--......G................ AACAAGGCGTTTGAGGAAGTAAAGCCTTTGTAT 674761 31 75.0 0 .C......-.C.C....TG..C...C...... | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 97.8 34 GTCGAGGTCTTCAGGACCTCGTGGATTGAAAT # Left flank : GAGAATGGTGCTTATACTGATAACATATGATGTGAATACGGAAACGGCAGAAGGACGAGCTAGATTGAGGAAAGTTGCCAAACAGTGTGTCAATTACGGACAGAGAGTACAAAATTCAGTATTTGAATGTATTATGGATTCTGGCAAATGTAGGGAAGTAAAGCATATTTTAGAGCAAATTATCGACGAAGATAAGGATAGCTTGAGATTCTATTATCTTGGCAATAATTATGCCAACAAAGTTGAACATATTGGAGCTAAAAAGTCTTTCGATATGGAAGGCCCTTTAATTGTTTAGCCGGGATAAATTTGTACTTCCTGTTTGTGCTATATTTATGCTGTGCGAATGTAAAGTGTACATGAATTTACTGAGAGATTCGCACTTGTTTTAATAAGGATTTTTGGAAAAGAAGTTTATTTGTTTATTGAAAAGTATTTGAATTTGTACAGGTAGTACAATATTTATATTTGTACATAGGTACAATATGTATACTTTTGCT # Right flank : TCTGCACTAATTCGAGCTAGTCTGGATTGCCGGTAGTCTTGGTCTATGAGATTTTATGGATTGTAATACATAAGGATTGAGGAAACCAAGCAGTGAAGGTATAATAAAGAGGTAGATTATTAAATAATTGGAATTGCCCTTAAGATATTTTTCCCAAATAACAGATTGGTAGAACTATAAATGAATTTTTCTAATTCATTTTTCATTATTTCAACTTAATCGTGTTGATGTTACAATAGCGTATATCATTTGTTGGATAATACTGGTGAAAAACATTAGTAGTTTTTTCTAAAGACATAACCGTTATAAAACATCTAATAGCAAAACGGGAGACGAATAAAATGACAAAACAAAAGACAAAACAAATACTGGAAGCTTTGGACAAAGAGTATGGAGTGACCAAGGAGGGCTTTGTTCATGAAACAGACTGGCAGCTATTAATCGCGATTATGCTGAGTGCCCAAAGTACAGATAAGCAGGTGGACGAGGCGCTTCCGGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGTCTTCAGGACCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //