Array 1 443-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLF010000028.1 Enterobacter cloacae complex sp. P1B 1612090727_S62_R1_(paired)_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 442 28 100.0 32 ............................ TGAGAACATAGTGGTATGAGTGTGTGATTTGA 382 28 100.0 32 ............................ AGTACATGATCCCTGGCGACAACGGCAAGGTC 322 28 100.0 32 ............................ ATTCCCGATTTTGTTCTTCAGGCTCTCGTCGA 262 28 100.0 33 ............................ ATAAGCAGATTATCCGGAGCACGCAACCGCCAC 201 28 100.0 33 ............................ ATCAGACGCTCAATCGCAAGCCGCATTTTTGAA 140 28 100.0 33 ............................ ACTTATTACCTCCCCCGACCCTGTTGTCAGTGT 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCCCAAACGCAGCCCGTATGCCGTTGCCTCGGGGCTTATCTGGAAGAAGTTAAAACCGGCCTCACGGAATCCATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGATACCGAAACGAAATGTGACTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCATCTTACAGGACTGCTCCATGACATTACGCATTCTATGGCCGCAGATGTTGTTGCGCCTCAACGTGAAGAAACGGTAATTCACATTATTTCCTGAGTGCAATCCAGGGCGTCGGGGGCGTTATTCTGACGCCATTGGTTTATACCCTTTTTTCTGATGCTTACGTAACATATTGATTTATATAGTGCGGATTTACGTTCCAGAAAAAAGGGTTTTAGGCGTAAAAGTTGATTATTTTATTTGCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : ACGCCTCGCTTTGAGCTATGATCGGCAGCGTAAGTTCACTGCCGTACAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 172807-172954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLF010000017.1 Enterobacter cloacae complex sp. P1B 1612090727_S62_R1_(paired)_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 172807 28 100.0 32 ............................ AATTCCAGCCCCGCCGAAGTCCTGGCGGCTAC 172867 28 100.0 32 ............................ ATGCCGTCCCAACCCCCGCCACCGGGCGGGAA 172927 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCACGGTTTGCATAAGCTGTTTGGCGGCGTGGGCTTTATCAGCGGCATGCTTGTGGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAATGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTACTGAAAATATAAGGGTCTCTGGACCCTTTTTCATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : ATCATTACGCAAAGCGCAAAAAGCCTTTCGCATGTTTACTGCCGTACAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAAGGAAGAGTACCAGGCGCGTAAAACTGGCACGGTTCACTGCCGTACAGGCAGCTTAGAAAGAGGCAGTGGCGCAGGTTGTTCGGCAGCTTGTGTTCACTGCCGTACAGGCAGCTTAGAAAATATGCAATGTTACCGAGTTAACACTGTAGTGGTTCACTGCCGTACAGGCAGCTTAGAAAAGTACGCCCTGCGCACCGGGTTGATCGCCTTTGTTCACTGCCGTACAGGCAGCATGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173207-173415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLF010000017.1 Enterobacter cloacae complex sp. P1B 1612090727_S62_R1_(paired)_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173207 28 100.0 32 ............................ GAGGCAGTGGCGCAGGTTGTTCGGCAGCTTGT 173267 28 100.0 32 ............................ ATATGCAATGTTACCGAGTTAACACTGTAGTG 173327 28 100.0 32 ............................ AGTACGCCCTGCGCACCGGGTTGATCGCCTTT 173387 28 89.3 0 .....................A.GC... | C [173413] ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCAGTTTACTGCCGTACAGGCAGCTTAGAAAAATTCCAGCCCCGCCGAAGTCCTGGCGGCTACGTTTACTGCCGTACAGGCAGCTTAGAAAATGCCGTCCCAACCCCCGCCACCGGGCGGGAAGTTTACTGCCGTACAGGCAGCTTAGAAATCATTACGCAAAGCGCAAAAAGCCTTTCGCATGTTTACTGCCGTACAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAAGGAAGAGTACCAGGCGCGTAAAACTGGCACG # Right flank : ACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCTGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGCACTTCCAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGTAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLF010000004.1 Enterobacter cloacae complex sp. P1B 1612090727_S62_R1_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 89.3 33 .G............C.......C..... ACTTATTATCTTCCATGACCCGGCTGCCAGTGT 64 28 100.0 32 ............................ ATGCCTCGATTTCTTTTTCGATAATCTTGTCG 124 28 100.0 32 ............................ TGCATGGTCATGCGGGAATAGATAAGCCGCTT 184 28 100.0 33 ............................ TGGTGCGTTGCCGCCAGCCGTTCTGAGGTCTGG 245 28 75.0 0 .C...............A...GC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.9 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCG # Right flank : AAATCTACCCCTCTTAAACATTTACTTTGCCTATTCAAAACTCAATATCATCAAACCCACACTCTCTATTTTTTACAATAAATAAAAAACTCATTCACGCGCCAATTATATTCTAAAAAATATATTATTCGTAAATATAATACATTGAATGGGAAAGTGATTTTTCGCTTTATTATCACGATAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCCGCATTCAATACCTTGAAATTAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACAATCCTGCATTCAAAGCGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTAAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGAAAAGAGTCGTTTTATTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10332-10840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCLF010000004.1 Enterobacter cloacae complex sp. P1B 1612090727_S62_R1_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10332 28 96.4 33 ..........T................. CAAAATGGGTCGGTAAAGCGGCGTGGGGCGCTG 10393 28 100.0 32 ............................ TCCAACATTGCAGTAAGACACCCGCCGCTTAA 10453 28 100.0 32 ............................ ATGACGTCTTCATAATCCAGCCCCTGTAAGGC 10513 28 96.4 32 .............T.............. ATAAAAATCGGCTGGCCGTCGGCGCGGTGTAT 10573 28 100.0 32 ............................ GTCACGTTTTCCCAGCCGCCGATCTCGATCAC 10633 28 100.0 32 ............................ ATATGAAAATGGCGGGGTTATCCCCGCCCTAC 10693 28 100.0 33 ............................ TTAACGAGAGCGACGATTTCCCCGATCGAGACG 10754 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 10814 26 85.7 0 ..........--...C......C..... | C [10839] ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGCGGGGATCCAGGTTCTCATATTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCATATGGAGTGGAATGGGGATTTTTTGTGCTGGGTGGTTTATGAGAAGAACGATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTCATTAATTTTAAATGAGTATTTTTGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGTAGGGTGTGGAGATATTATTTCAGTGCACTGCCGTACAGGCAGCTTAGAAAGTTTGCGCCGCGTTGATAAATGTCGGGATGGCGTGCACTGCCGTACAGGCAGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTACAGGCAGCTTAGAAAACCTGCAACGAATTAATCAGGCTTGGACTGCT # Right flank : AATAGAAAATAAGGCCTAACAGTCGTCGCACCGTGCACTGTCGAACAGACAGCCCCAAATCTCAAACGAACCGCCAACTAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //