Array 1 140264-139594 **** Predicted by CRISPRDetect 2.4 *** >NC_004757.1 Nitrosomonas europaea ATCC 19718, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 140263 36 100.0 35 .................................... TCCGTTTGCCTGAACATTGCCGACATTAATATTCT 140192 36 100.0 35 .................................... CACTGCCCGAGCAGTATTCTCCGAATCTACGCCGA 140121 36 100.0 35 .................................... ATAGGTCTCGTTGGGAAAGATTTCGGCATGGAATC 140050 36 100.0 34 .................................... TTAGGATCACCATAACTGATCGCGTTAGCCAAGG 139980 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 139909 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 139838 36 100.0 34 .................................... AAATACTTTTCCTCATATGTCTCGAACCAGTAGA 139768 36 100.0 33 .................................... CATCTTTACTTCGAAACCATACGGCCAATAGAT 139699 36 100.0 34 .................................... AACGCCCACCTATCTTTTTCAACAGCAGGATACC 139629 35 75.0 0 ...........A......A...CGCC.....-..TG | A [139607] ========== ====== ====== ====== ==================================== =================================== ================== 10 36 97.5 35 GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCGGATCACGATTCCGGAGATTGGGAATAAATATGAGAATAAGTGCACCACTACCCGGGTCCCATGCCAGCGGATCATTTTTTGAAAAGACAGGCAATGAGTGACTTTATCATCTGCTACGACATCACTGACCCACGCAGATTAGGACGCTTGTATCGTTATCTGATCAAACGGGCAGTACCATTGCAGTATTCGGTATTCCTGTTCAGGGGTGACGATCGTCAGCTTGAACGCTGTATACAGGATGCCATCGAGCTGATTGACGAAAAACAGGACGATTTGCGGGTTTATCCACTACCGGGCCGCGGCCTGAAAGCGCGTATCGGCCGCCCTACACTGCCGGAAGGCATACAATGGAGTGGCCTGCCGGCCAAATGGTAAAATATAATGTATCTGGAAGAAACAGTCGTTTAAAAAGAGGTAACTTGCAACATCCCATCAGTTTTCCTTATCGCCCTTTGCAATTTATTGATCTGGCGGAAGAAAAACACGGTGGTCA # Right flank : CGTAAATGCGTTTTGTCTGCTGTTTTCCCCGGCCATATATATCCAAGAATAATTCAACGTTGGCAACGTAAACCCGCAACAGCTCCAGATACACCCGCTTTACTTGTTATACTGCTCAGCCTGAAAATAACTGATCAAAATTACATTGATGGAGGAGAAATGGATATTTTGAGTTTGGTGGCAGGATTTCTGGCGGGTGCGCTTACGATTTATCTCGCCAGTTATTTCATGAAGCCGAGTGAAAACAAGACACAAAAAACGGTCGATGCAGGCACTATCAATTTGTTCGATCAGTTGTGGCAGACACATGAGCGCTTGCTCAACGAAATGAAGCAGGATGTAGAAAATCCCGATTTCAAATTTCACCGGGAATTTTATGTGCTGAAAAAAGGCTGGGGGTGGGAGCGCTGGGGATTTCATCGCAGAGGTCCCTGTATCGCCTATTTCCTGGAGGATCACAGTGATCTGCTGCCGTTGCTGGATTCGCTGACTTCTTACGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 921023-921636 **** Predicted by CRISPRDetect 2.4 *** >NC_004757.1 Nitrosomonas europaea ATCC 19718, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 921023 37 100.0 35 ..................................... TGGCAATCCTTGATCCATAACGAGATGACTAGCTT 921095 37 100.0 35 ..................................... ATTGATGTTACAATCCGAGAAAACCGAGGCTCCTA 921167 37 100.0 36 ..................................... AGTGGCATCAGTAATAGATTTGTCAGGGTCACAGGC 921240 37 100.0 35 ..................................... TCTACCTCTCTTGATCTCCATCAGGAAATTGCCAG 921312 37 100.0 34 ..................................... TTTAAATCGCTAAGAATTACTGACCCTAATCTAA 921383 37 100.0 35 ..................................... ACATCGTAATAGGCTGCATTACTGGCCCGTGTCAA 921455 37 100.0 36 ..................................... ATGATGTATTCAGGTATCAGCGTCTGTGCCGGTAAT 921528 37 100.0 35 ..................................... CCGGTAGTCGACCTATTAAAGCCATCATTTAATTA 921600 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 35 GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Left flank : GGTTATCTTCCTTTCTTGGTTAGATAATCATGCTGATCATTGTTACTTACGATGTTTCAACGGAAACCAGAGCAGGTCGCAAGCGATTGCGCCGTGTTGCAAAATTATGTGAAAGTATCGGGCAACGTGTGCAAAAATCTGTATTTGAATGTCGTATCAATTTAATGCAGTATGAGGAGCTGGAGCGTCGTTTACTGTCTGAAATAGACGAACAGGAAGATAATCTGCGGCTATATCGCCTGACCGAACCGGCGGAGCTCCATGTAAAAGAGTATGGCAATTTTAAGGCAATTGATTTTGAAGGACCTCTCACTATCTGATAAACGCGAACCTGTAGCACCGGCTCAATACCGGCCAGTTCGCGCTACATCTAACTGTATGGTAACAAACAGGAAAATAGCTTCCTTTTTCTACTGTTCGTTACCGGCAGCCGAGAAAATCTTTACGTTCGCGCAAATTGCCCGAATTTTAAAGATGTATCAAGCAGTTATAGTTGTACT # Right flank : CAGTTATTCTCTGAGCCACCTGCTGTTTGCACGTACTTGAGTGATTGGGTTCCTGTCCAGCGCAGTGCTATTCTTCAATATATGATTTCCATCGTAAACCAGTTTTGATTCACCACGATCCGGCTTGGAAAGCGTTTTTGTTTCTATGACATAGATACCGGATGAGTGGATGACGACATGGTCGAGATTAAATCCTTTTCCCGGTATATCGTGAAAAATATGACTTCCTTGGGCTCTTAATCGTTCAAGAAATTGCCCTACCGCAAGTTCTCCGGCCAAACCTAGCTTGATACGCTTGACTTCTTTGCGCCCTTTATAAATTTTCCATAGAAGTGTTGCGATACAAGGTATAGCCATCACTGTAAATAAAACCGGGTTTGGTGATGTTTGTGTATACCACCGTATCCATTCCCACGCGGCTATTAATACAAAACATAATGCTGCTATGAAATACGGAACGATACCATCCAGGAAAATATTCTGAAGACGGTGATTCAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.60,-17.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //