Array 1 28476-29353 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKYC01000035.1 Klebsiella pneumoniae strain AS012284 AS012284_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28476 29 100.0 32 ............................. TCACTTTGCGCGCAGCTGGGACATGTAAGTTA 28537 29 100.0 32 ............................. CTGACCTACTGACGGAAATCCCGCCTGCTTGA 28598 29 100.0 32 ............................. TGAGGAGCTCGTTGACCTGCAGGCACATCCCT 28659 29 100.0 32 ............................. TAATTCAGGAAATGAATTCTAAAATCGACTCT 28720 28 89.7 32 .....-......CA............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 28780 29 93.1 32 ............CT............... CGAATCCTCAGCGCGTGTCACGGTGACTGACC 28841 28 89.7 30 .............A..-T........... TTACTTTAAGTAGTGCATTTTTTTGTGTTT 28899 29 93.1 32 ............CT............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 28960 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 29020 29 89.7 32 ............CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 29081 29 96.6 32 .............C............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 29142 29 100.0 32 ............................. AATCGACATCTCGTCCGTGGATGCGAAAAACA 29203 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 29264 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 29325 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 95.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : GGCTGGATTTCCGTCAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTCCGGCAGTGGATTAAAGTATTCCCCCCGCTTGCGGGGGTTATCGGTGACTTTTAAAAAAAATCAGCTGAAACAGCCGGTATTCCCCCGTGTGCGGGGGTTATCGGTTCCGGACTCCTGTTTCCGGCAGTGGATTAAAGTATTCCCCCCGCATGCGGGGGTTATCGGCACTACCAGATCCGAATGGACACCCGTAATGAGTATTCCCCCCGCACGCGGGGGTATCGACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29496-29705 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKYC01000035.1 Klebsiella pneumoniae strain AS012284 AS012284_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29496 29 96.6 32 .............T............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 29557 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 29617 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 29678 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : CACTAAGACGCTGGTGGTCGCCACGTATTCCCCCCGCATGCGGGGGTTATTGGCCGGTTCGGATTTTGCGAAACAGGTGCAGGGCGTATTCCCCCCGTCTGCGGGGGTTATCGGGCTGGATTTCCGTCAGTTGGTCAGCTGCTGCTGTATTCCCCCCGTGTGCGGGGGTTATCGGAATCGACATCTCGTCCGTGGATGCGAAAAACAGTATTCCCCCCGTGTGCGGGGGTTATCGGTTACTTTTTGGCAGTTGGTAAAACACTTTTGCGTATTCCCCCCGCATGCGGGGGTTATCGGGAAAGTAGGGGCTACGCCGGAATTCCGAAGAGGTATTCCCCCCGTGTGCGGGGGTTATCGGGCTGGATTTCCGTCAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTCCGGCAGTGGATTAAA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCAAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //