Array 1 48258-48025 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDO01000036.1 Helicobacter cinaedi strain JCHOHcS05 isolate S05 scaffold36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48257 36 100.0 30 .................................... CAGCATTCACACCGCCCACGAACACATCTT 48191 36 100.0 30 .................................... TCAATCGTTTGCGTCCTAAGTTTGAAAGCA 48125 36 100.0 30 .................................... TACACGCTCACAGCCCATAAGCTAGATTCA 48059 34 86.1 0 ....................A--.........T.T. | T [48030] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ATCTATACAAGCCCATACAATACAAAGCCATTATGCTAATTTTGCCTAGCCACCTAGCTTAAGATCTCTTAAAACCTTTAGACTGCCCCTCTTAACACATCTCATCTTTTAAAGCTTACGATTTTAGAATCTTGCCATACTTTTAAAACCTTGTCATACTGAGACTTTTGCCGAAGTATCTATATTCTAAAATTCTTATAAAACCCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCA # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 43291-42593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHDO01000047.1 Helicobacter cinaedi strain JCHOHcS05 isolate S05 scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 43290 36 100.0 30 .................................... TTAGTAATATGCAAGTGAGATTGAATGGAA 43224 36 100.0 30 .................................... TGCTGCTATGTGGAATACAAAATCATAAAA 43158 36 100.0 30 .................................... CTAACTTTAGGAATAATAGGAGGATTTTTA 43092 36 100.0 31 .................................... AGTTCTTGTAATGCTTCCTCTTGTGTGATAA 43025 36 100.0 30 .................................... TACGATTTTCCATAGAGGTAAATCTTTCCA 42959 36 100.0 30 .................................... ACAAGCATTACCCAGAGCAATGGGATTTAA 42893 36 100.0 30 .................................... ACAAGCATTACCCAGAGCAATGGGATTTAA 42827 36 100.0 30 .................................... TATAATTTTCTACTAGCAAACTACAATTAT 42761 36 100.0 30 .................................... CGAGTATAAAAACGGGTATAGACTTGTCAT 42695 36 100.0 31 .................................... AGTATTTCGCTACACCCTTTATATTATACCA 42628 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.7 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //