Array 1 1450823-1449220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065999.1 Kingella denitrificans strain FDAARGOS_1060 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1450822 33 93.9 32 CT............................... ACCCCTTGGATTACCGCATTAACCGAATCAAT 1450757 33 97.0 32 C................................ CACGCCCATGTTTTCCAATGCGGCAAGGTCTG 1450692 33 93.9 32 CC............................... ACACAGCACCAGTTGCAACAGCGGTTGCGCTT 1450627 33 93.9 34 TG............................... TGCGGCGGCTCTATCACGGATTTTCTGGATGGTC 1450560 33 97.0 33 .T............................... CAAAGGCAACCTTATCCCTTTGGCGAATATCAA 1450494 33 93.9 32 GC............................... CGCGCATGGTATCAGGCACGGCGGCCAAACCG 1450429 33 100.0 33 ................................. ACGCACAGCAACGGCGGCCAGGTCAAATCCATC 1450363 33 97.0 33 .G............................... AACATCCGCGCCAGCCAATCGCGCAGCCAGTCC 1450297 33 100.0 32 ................................. CAGCGCCATGTCTTTGTTATAGCCGATGTACC 1450232 33 97.0 34 .C............................... GAAGTCGATTTGCACAGCCTTATCCGTATGGATG 1450165 33 93.9 33 CG............................... CGTTTCTTATCCGCCATCCCGCTCACCATTTCC 1450099 33 93.9 32 CT............................... AGCCCTGTTTTTTTTGCCATGGTGTCAATCTC 1450034 33 93.9 32 CG............................... AGTTTGCCCGGCTCTTGGGTTTGGGCAAGGTG 1449969 33 97.0 33 G................................ TTCCAGTGTTACCATATTTCGTCCTTTCAGCTG 1449903 33 93.9 31 CC............................... ATGATAAAACCCCCGAAAGGATAAGACTTTC 1449839 33 93.9 33 GG............................... GCGGGTTACGGCGATATGGGTATCGGTTTGCGC 1449773 33 93.9 32 CC............................... CTAGTCGAACTCTCTTTTGAACTGGGTTTGCC 1449708 33 93.9 31 GC............................... TTCAGGCAGTAGAGCATGGTTTAAGAGGACA 1449644 33 93.9 33 GC............................... ACTGAAAAACTGCGTGCACACAACATGGTTTTG 1449578 33 97.0 32 G................................ TGGCAGCGCTACCAATGCGACGTACTGCCCGA 1449513 33 100.0 32 ................................. TGGTTTGTGGCAGCTGGCCCACTGCGCGGAAA 1449448 33 100.0 32 ................................. AAAGGCGATAACAGCGCCATCCGCCTGTGCGA 1449383 33 90.9 32 TG....................T.......... CGGATACCGTCAAAAGTAATCGTTGTCATACC 1449318 33 90.9 33 GC....................T.......... AACCGCTGGATATTTTTACGCACATCGTTAATC 1449252 33 78.8 0 GT...C.......A......C.T.........T | ========== ====== ====== ====== ================================= ================================== ================== 25 33 94.8 32 AACAGTCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGAGAGCTTAGCGAAATTGGGGTTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : ACCCTGATTCGCGCCATTTTGAACAAATATGCGACCAACCACCTTCGGGTTGCTGTATTGAAACGACATGGAGGCGGATAAATTGGATAAATAAGCGTGTACTGGAATATGAAAATTTGGTGTAAAGGCAGATAATGCGTAGCCACTTCTAGATAACTCAGTATTAGGGCAAATAATTTAACTCGACACTTTAGCTGAGCAGCATGCAGCTTTTTGAATATCCCAATATCCACGTTTTTGCATAATCGAAATTGATATATATGTTATATGTTAAGGTGGAATCAGATAGGTACTAAAAGTCTTTTAGTTATTAAAATAACAGTATAATAATATTTATATAGCTAATATTAATAAACTTTTATTATCTCTAAAACAGATTTTTAGATATTAATAATGTTATTTAATATGTTTTTCATATCATGTGCGTAGATTAACCAGATAACATTCTCAATATAAATGTGCAGGCTGCTTTTTCACGATTTAAAAAGCAGCCTGCACTC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGTCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //