Array 1 856363-860494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034842.1 Fusobacterium necrophorum subsp. necrophorum strain ATCC 25286 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 856363 30 100.0 36 .............................. GAAAAACAACACTATGCAATGCTATTTTATCAGAAA 856429 30 100.0 35 .............................. GCAATTCTTTCAACACCTTACAATACAAAAGTTAA 856494 30 100.0 37 .............................. CTTGTCCCGGAGTTCCTGCTTGGTTTAAAAATTCCAT 856561 30 100.0 37 .............................. ATTAGAAAAAGGAGATGTTGAGAATGAAACAAAGAGA 856628 30 100.0 37 .............................. AGCAATGCTTATTTGATGATACATAGAGTAAGCTGCG 856695 30 100.0 36 .............................. TAAAATGTAATTGGTAAATTTTCAAAATCATATTTT 856761 30 100.0 37 .............................. TTTTTCTTTACAATAATTTCATCTGTAAAACGATTTC 856828 30 100.0 35 .............................. CTAGTTCGTTGATAACATACTTTCTGTCCTCTCCT 856893 30 100.0 37 .............................. TCCTTACAGGTATGAATGAGTACTACATTTTAAACTT 856960 30 100.0 35 .............................. TAAAAACAGCAATATTTTCTGTTTGGGAAGTTTTG 857025 30 100.0 36 .............................. AGTCTTTTAATGTCTTCATTTCCCCCGCTCATGATT 857091 30 100.0 36 .............................. GAAGAAAAATTATTGTAGATGATTTCAGAAGAAAAA 857157 30 100.0 35 .............................. TTTTCTTGGATATGAAAAGTCAATTCTTAATACTC 857222 30 100.0 36 .............................. AATAACAAAATAAGTATAAGTTCAATATCAACGTCA 857288 30 100.0 37 .............................. TGAGAAGAAATATCTCTTATTTCAGGATTTAATTTTT 857355 30 100.0 36 .............................. TTTCTTTAAATTGATATGCTGTATGTTCCCTAGTTT 857421 30 100.0 35 .............................. AGTTAAATTCAAGATATTTTTTATAGTGCCTTTAG 857486 30 100.0 36 .............................. ATTCTTTCCTTCGAATAAGCTATAGCATTATCATCT 857552 30 100.0 36 .............................. ATCAATAATGGATTTCGTAGAACTCGAAATAACAAG 857618 30 100.0 36 .............................. TGCAGCAATACATGACAGGATTTTCAATCATAGATA 857684 30 100.0 37 .............................. AATAACGAAGACGATTTATTTCTTGAGGGACTTCTAA 857751 30 100.0 35 .............................. ATGCTTGATCGAAATCTACTATGTCCTCTTCTCTT 857816 30 100.0 37 .............................. ATTATATGATGCATTAGAATCAAGAATAAGTAGACTA 857883 30 100.0 36 .............................. GCTTTTATAATGGGGTTAGAAGATGAATACAACAAC 857949 30 100.0 35 .............................. GTAAAAGATATTTTAAAATTAGTTTTGAAAAAATT 858014 30 100.0 36 .............................. AATGTAAAGTTCTACATTTTCTTCAAGCAAATCCAT 858080 30 100.0 37 .............................. GCGGAATTAGTTGGAATCGCAAAAGGCATAGGAAGAT 858147 30 100.0 35 .............................. TCTTCTTTAATGTCTGGCGGAAGCGGAGCTTTATC 858212 30 100.0 36 .............................. AAAAAATACCCTATTTTTTATATTGGTATTAAAGTG 858278 30 100.0 35 .............................. TCTGTTGTTTGGGATGCCCACTATCAACAAACTAG 858343 30 100.0 35 .............................. GATGCACTTTTAAGGTTAAGAGGAGCAATCAATCC 858408 30 100.0 37 .............................. CAGGAAGTTTTAAATTCAATATTCAGTCAAGAAAAAT 858475 30 100.0 36 .............................. AGCAGGATTTAGGTGTAGTTGGAGATGATGTTACGC 858541 30 100.0 37 .............................. AGCTTTACTCTTACCGCACAAGATAGACACGGAGTAA 858608 29 96.7 37 ..............-............... AAGTTCTAAAGTTTGAAATACCGACCTTTAATTTTTT 858674 30 100.0 37 .............................. TTTAGAAATGTTCCCGCACCTGCGTAAATTAAATATA 858741 30 100.0 37 .............................. GCCGAGAACGACGGGAGAGGTTAGAAAGGCTTACCGT 858808 30 100.0 36 .............................. AGAATAACAGATAAGATTAAAACTACAAAAATAAAA 858874 30 100.0 37 .............................. ACTCTATTTGTACCAAAATCTATATTGTACCCAATAA 858941 30 100.0 37 .............................. CAGGAATTTGGGGGGCTGTAGCAGGTCTAGGATTAAG 859008 30 100.0 37 .............................. ATGTGAATGTCAGATAAACATAAAATAGCTTTATTTG 859075 30 100.0 36 .............................. GCAACTTCTTGTGTACTTTTTAGCAAAGGGTTACCT 859141 30 100.0 35 .............................. AACTTGGGGATGTGCGAGGAGAGGGAGAAGTATCA 859206 30 100.0 35 .............................. ATTAACAGTAAACAAAGTTTAGCAAGTATGACACC 859271 30 100.0 35 .............................. GTTACTAAAATTGGAAATACATATACGATAAAAAA 859336 30 100.0 37 .............................. ATACTTCCATAAATTTTAATGTTTTCTATGAGGTAGT 859403 30 100.0 37 .............................. ACCGGTTATGGCTGCAAGCCAAAGACAAGCTTCTTTC 859470 30 100.0 36 .............................. GTTACAGTCCAATATTTTATGGAAGTTTCTAATTTT 859536 30 100.0 36 .............................. TTTTCAATGGCTGCATTATTTTTCACATAGTCCCAT 859602 30 100.0 35 .............................. GAGCGAAGACAAAACTTAGGCTATCAATTAAATGC 859667 30 100.0 36 .............................. TAAGTATATAGAAGAACACTGTTTAATACATAGTGT 859733 30 100.0 37 .............................. TAACTTATGCTGCCATTCCTATTTTTAGAGCGATATC A [859738] 859801 30 100.0 36 .............................. ATTTCTGCTAGATTTTCAACTATGCTAATTCCTTCT 859867 30 100.0 35 .............................. GAGAATAGATAAATATCAAAGTTACTACAGAAAAA 859932 30 100.0 36 .............................. CGAATGTAGATACAAGGGAGAATACGACAGACACCC 859998 30 100.0 34 .............................. CAAGAAGAAATAAGAACAGAATTACTTCCTGTTC 860062 30 100.0 38 .............................. GGCTTAATAGAAGAATATGATATTATAATACTGTCAGA 860130 30 100.0 38 .............................. AGTGGGAGAACGCGGAACGGGAAAAACCAGTGTTGCTA 860198 30 100.0 36 .............................. ATATATACACCATTTGCATAGATTTTCATCTGCATA 860264 30 100.0 37 .............................. AGTATCGTTCAATGGATTTTGGGAGTTTGCGGAACAA 860331 30 96.7 36 ...............G.............. TCGTACAAACCCTTAACTGCATTTGTAACCTCTAAA 860397 30 96.7 38 ...............G.............. AAAGGTCGGTATATAGTAGGGTATCAAGATGGAGAAAT 860465 30 90.0 0 ...............G......G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 63 30 99.7 36 ATTAGAGTATTACTAAAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTTTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TGTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTCAAAAAAGTATATTTTTATGAATTATCGTGATATAATTGAAATAAAAATTGGAGAAGAGAAAGGAGGTTTTTGTGAATACGAAAGAAGATTTTAATAAAAGCAGAGCAGCTCAAGAATTGTGGTTAAGTAAAAAAAATTGGAAAGAAAAAATAGAACATATAAAAATTCCTAGTTATTTAAAAGATGACTTAGAAGAATATTTCAAATATATAAAAGAAGGGAATAATATTATGTATTCAGCAGTAATCGATAATGTGATTGCAAGTATAAATGTTGCAGAACAAGAAAAGGATTTGACTTCTGAAGAAGCTAAATATATTAGAAAAATATTATAGGAGTATATTATGATTCAATTTAATGAATGCGAGAAAAACTTATTTCGAGGATATGATGGAGCAAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1380681-1382562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034842.1 Fusobacterium necrophorum subsp. necrophorum strain ATCC 25286 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1380681 30 100.0 35 .............................. TGGAATGGCTTGGCCAGTACATTAGCCTGACTGGT 1380746 30 100.0 35 .............................. GAGCAACTAGATACAATATGTATCTAGCAGAAAAC 1380811 30 100.0 35 .............................. AAATTTTGTATAGATTCCTTTCTATTTTGAACCGT 1380876 30 100.0 36 .............................. AAAATGTAGCAGTCTCCCCCTTCTGTATTCGCTCCT 1380942 30 100.0 35 .............................. TTAACTCCATACTCCCTCCTTTCTTTGTTTCTTTT 1381007 30 100.0 36 .............................. TACCTGCAAAATCCCGGTGTTTTTTTCATTCAAATA 1381073 30 100.0 38 .............................. ATTTTCAAGTGCTTTTTGTAGTCTTCTTCTTCTACTGC 1381141 30 100.0 37 .............................. AAATATTTAAGAGAAATGAGTGTGATAGATAAATATA 1381208 30 100.0 36 .............................. CTCTTTATAAAGAACTCTCATACCTTCTTTAAAAAT 1381274 30 100.0 36 .............................. TTTCTTGGACTTGGAGTACAAATTCCACAAGCAGAA 1381340 30 100.0 38 .............................. TAATATACCCGGCAGAGAATGACCAGGGAAATTTAACA 1381408 30 100.0 37 .............................. TTTACTATAAATATCCTCCGAAGAAAAACTATCGATT 1381475 30 100.0 36 .............................. TTGTTCAATCTTAGAAACTAAATTTGCTTTCACATT 1381541 30 100.0 36 .............................. AATGATTTTCCATTTTTTTCTTGTGATAGTTCTACC 1381607 30 100.0 37 .............................. CTACTAATGCATAATCAAGATCCACAATTCCATTTGG 1381674 30 100.0 36 .............................. TCATAATTTTCTGCTTGTGGAGAAGTTTTCCGGTTA 1381740 30 100.0 36 .............................. TTTAAAAGAAAAAGACATTTCTAGAATTATTCACGC 1381806 30 100.0 37 .............................. AAGAAAAAAGAAGCTTTTAGAAAAAATCTTTTAAATT 1381873 30 100.0 36 .............................. TCTTGTTTTAATGTTTTTACTAATAAAGAATAATCA 1381939 30 100.0 37 .............................. TCTTTTCGTATTTTACCTCTCGTTTTTCTTCTTTAAA 1382006 30 100.0 35 .............................. AGAGGAGTAAAAGAAGCAGCAAAAGGGGCATATGA 1382071 30 100.0 36 .............................. TAATAGTTTTACTTCACAAACTTCAAGTAATTCTAA 1382137 30 100.0 36 .............................. TAAGAAAAAATGATAAACCTAAGCCGCTTAAAAAAG 1382203 30 100.0 36 .............................. GATTGATATTTACGAAAGAAAACCAAAGCAATATTA 1382269 30 100.0 36 .............................. TTCACTTACAAAGAATTGCTAGAAGTTGTTGATTTA 1382335 30 100.0 36 .............................. AAATCTTCTTCCGTTTTGTCTCTTCTCCAATCTTTC 1382401 30 100.0 36 .............................. TTGATAAAAACAGATGATGAAAGGGCTGTTAGAATG 1382467 30 100.0 36 .............................. TGCTATGCTTTGTTGATTTCTATCACAATAGAAACA 1382533 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 36 ATTTACATTTCACTCTGTTTCTATTATAAG # Left flank : CATATAGATTCCCTGATCGGTAAAAGCATGAGGATTGTACTTAATATTACTACCTCTTCCTGCACTCTTGTTCAAGGTCACATTTTGTGACCTTGAAAGTTTAGAGACTTCCTCGTCAGTTAATCGGAACATAAAATCTTCATCAAATTTTTCAATATTCCTTTTTACTTGCTGATTAAAAGCCTTTGTTTCATATCCATAGATTTCGGCTAATTCAAAGTCAAGCATGACCTTTTGTCCCCTAATAATATAAATCTTTTTCTCAAGGGATTCCTGGCTTACAATCATCATTTCATCTTTTTTATCCATTTCTTTATCCTCTTATTCAAAGTTCCAAACAGTTCATTTCATAGACTATATTGTATCCTAAATGTAATATCATTCATCATAAAACTTTTGAAAAATTAAAAACCTTATAAGTATCCCTATCAAACCACAAGACCACTCTGTTTCTATTATAAGTTTTTCTGATTCTGACAATACTTCTCAATACTAAAAAT # Right flank : GCCGCATAAGATAAAGTCTTTTATTTTAGCTCATTTTCACTCCCAAATTTGTCGACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAATAAAAAATGTCAAAAATCATCTCTAGTCCTTTATTAGAAGTAGTTTGTCGACCTCTTAGGAAATTTACATTATTGGGGGTCGACAAGCAAAAAAATACCCTCATATTATTTCATTTCAATATACTTTTTTATCCTTAACTCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTGATAACTTAAAACATTTCTAGATGCATACAAAGCCTATTACAAATGAAACTCCTTTATTTTTTGATAAGAATTTATTGTTATCTTTTTCTCTATTTTCACTCCTTTAAGTAAGGTAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCATGCTGACGAATTTTTTCCTCTTTTGAAATACTTTCTTCTCCCCTACCGTTTCCGGTCTGATATGTAAAATCAATTGCACTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACTCTGTTTCTATTATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1509948-1507953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034842.1 Fusobacterium necrophorum subsp. necrophorum strain ATCC 25286 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1509947 37 100.0 35 ..................................... CTCTATCATGGAATCTGTTAAGTAAATTCCATGAA 1509875 37 100.0 38 ..................................... TTATTTTGTTCATTATTCCTCCTCTTTTTTTGATTTTT 1509800 37 100.0 36 ..................................... TGCTTAACACAATAAAATTTCTAAAATTTTTCATTT 1509727 37 100.0 36 ..................................... ACAATAATTTTTCTTTGTATTTATTTTGAATTTTTG 1509654 37 100.0 34 ..................................... TTTCCAACTCCACCTTTATGCTGTTTTACCAAAA 1509583 37 100.0 33 ..................................... TAATAATTTAAAATTTTCTTAAATGCATTTTCT 1509513 37 100.0 35 ..................................... GAGCAAATTTTTTCCTCATTTTCTCTTCTAAACTA 1509441 37 100.0 35 ..................................... TCTGACCGCTTCATAAAGTATTTTAAAAGTTTTTA 1509369 37 100.0 35 ..................................... AATTTTCTTTCGCTTTTATAGCTTAAAAGTTCTAA 1509297 37 100.0 36 ..................................... ACTCATAGATTCTCCCCAAATTAAGAAACTTGTTGG 1509224 37 100.0 33 ..................................... TGTTTCACACTGTCTTTTTCTTCTGCCGCTATT 1509154 37 100.0 36 ..................................... ATAATTCCGACCAACACAATTACTGCATTTGACATT 1509081 37 100.0 35 ..................................... TGTTTACTTCTATACATATTTTCATCAACTTCTAC 1509009 37 97.3 35 ..............T...................... GAAATATGATTTTCTTATTTCTAAATTGCTTTTGT 1508937 37 100.0 35 ..................................... TCCATCTCCTCTAACATTGCTCCTAATTTTATTTG 1508865 37 100.0 34 ..................................... TTTTTAATCTGGCTCATGTAAATTTTTTTCATTT 1508794 37 100.0 35 ..................................... CTCTTCGTAACTTCCTTTTAAAAATAAATTCTTTT 1508722 37 97.3 35 .................G................... TCTTTTCCCCACTACAGATACATTTAGTGATATTT 1508650 37 100.0 35 ..................................... CCATACTTTGATTCCCTATATATTCTTGCATTTCT 1508578 37 97.3 37 ....G................................ ATTCCAAGCTCTTTTGCCATTTTGCTTAAAGAAATTT 1508504 37 97.3 34 .................G................... ACTTTAACATAAATTGCAAGTATTTTTTTTATCT 1508433 37 97.3 34 .................G................... ACTTTAACATAAATTGCAAGTATTTTTTTTATCT 1508362 37 97.3 39 .................G................... AGGAATATACACTTCCTCATATACTCCTTTTAAAAATAG 1508286 37 97.3 36 .................G................... ACATTTTCTCATCTCCCATTTTTAAAAATTTAATGC 1508213 37 97.3 39 .................G................... CATTGATACCACTTCCTTTTTTTTCTTTTATTTTTGAAA 1508137 37 94.6 35 .................G........G.......... ACTAGCAAGAAAAACTAATATCAATCGTTTAACTC 1508065 37 97.3 35 .................G................... TCAAAGACTACATCAGCCATATACTCCCCCCTTCA 1507993 36 86.5 0 .........................A....A-...GT | CG,C,CC [1507959,1507963,1507967] ========== ====== ====== ====== ===================================== ======================================= ================== 28 37 98.5 35 ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Left flank : AGAAAGAAGAAATAAAATACGAATTCGAGTAAAAATATGCATTGTCTCAAATAAAGTTTTTATAACATTAATGCTATTATCTGAAAATTTTAACATAAGAAAGGATTCTTCCAATTGATTGATTTTCTTTAGAAGATGACATTTCGTATTGATTTTAGAAAACATTCTGTATTTAGTATACACGGTATCAAGCTCTACTAATATTTTTTCCATATTTTTTCTCCTATTCTTGACGATTATATATTTATACTATACAATAGAAGTGGAAGAAAATAAAATATTTTTTTACGAAAGTATTTAATGTTTTATTTTATGCAATATAAAATCTTATTTGAAGGGAGGTTATGATTACGAAAGGGAAAATAGTCATATCAAAATATAAGTACTTTTTGAATAAAAATGTAGAAAAGTATCAATTTATTGTACACTTTTTTAAAAAAATTACGAAACAAAATAGTCAAAAAAGGATTGGAAATTATGAAAAATAAACACAGATTGCT # Right flank : CGCCCACCTCTATAGGTAGTGTGATGAATTGCCCTATTGTTTTTTAGAGAACAAAGAAATATACTGTAATCAGTAGATATATAAAAATAGGAGTAAAACCAATGGAATTAGATAGTAATTGTCATTCAATATATAAGAAAATATCTTTGGAAAGAAATGTTTTGGTCTAAAAGTTTTTGTTTGTTGACTACTGGGGGGAGCTCCTATGGAAGTCATTAAAAAATATAGAGAAGAACAAGAACAAAAGAAGAAATCATTTTGAGGGAGGTGGACGGGTGAGACAACTAAAAGCATATAAATTTAGAATGTATCCAAGCGAAGAACAAAAGATATTTTTTAATAAAACGTTCGGTTGTGTTCGTCTTGTCTATAATCTTATGCTACATGATAGAATGAAAGCATAGGAAGAAAGGAAAGAGACCCCTGATAAAAAGACAACATATCCAACTCCTGCAAACTATAAAAAAAGAGTATGAATTTCTAAAAGAAGTGGATAGTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Alternate repeat : ATTAAAGAGAATATCCAGCATTAATGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 4 2393594-2394019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034842.1 Fusobacterium necrophorum subsp. necrophorum strain ATCC 25286 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2393594 30 100.0 35 .............................. TCTTTATTTCTTCAAATGTTCTCATCTATTCTTCC 2393659 30 100.0 36 .............................. GCGGAATTAGTTGGAATCGCAAAAGGCATAGGAAGA 2393725 30 100.0 36 .............................. TGTTTTTTCTTTCATATTTTTTCATCTCCTTTTCTC 2393791 30 100.0 36 .............................. TTATCAGTTCATCTGCTTGTGTCTTAATCAATCCCG 2393857 30 100.0 37 .............................. CGATTTAACAAAGGAAACATATAAACCGGATGATTCT 2393924 30 100.0 36 .............................. AATCTAATTCTTGGTTTTTATCCTGATTGTTCATAT 2393990 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 CTCATAATCGAAGCAGACTGAAATTTAAAT # Left flank : CAGCGTGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTATCTTCTTAAAGGAGTGAAAATAGAGAAAAAGATAGCAATAAATTCTTATCAAGAGATAAAGATAGTCTCTTGTGAGTATGATTTCTGGGTAGGATTGGGGAAGATAAATAAGGCAAAAGAGAAGGAATAGGATAGAAAGGAGTTTCATTTGTAATAGGATTTGTATGAACCTGGAAATGTTTTAAGTTGTTACCAAAAGAAAAACATTAAAAACATTTTTAAGGGTTAACGATAAAAAAGTATATTGAAATGAAATAATATGAGAGTATTTTTTTGCTTGTCGCCCCTCAATAATGTAAATCTCCTAAGAGGTCGACAAACTATTTCTAGTAAGCGACTAAAGATGATTTTTGACATTTTTTGTTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTTGACAAATTTGATGGTAAAAATTATTTGAAATAAAGAACTTTATCTTATGCGG # Right flank : TTATCCAGTATAAACCCTAGCTTATCGCCTTGAATCATTCATATTAGTGCTACTTTCATTTCTTTGTCTCTGAGAGAGAACTTTTTTCTGTATTTTCTTTCTAAAGTTTTTTAATATAATTTTTTATTATTCTTACTTAATGATAGGAAATACTATTGGCATTAAAATACTTAAAATATTGGGAGTTTTATAAAAAAGTGCTAAGACAGAAAGTAGAAATATAATAATAATTTTAAAATTTAATTTACTTTGGAATACGATAGATATGAAATATTAAAAAATGATTAGTTTATAATTAAATATATATTTAAAATTCATGAGATGGAGGTAAACTTGGTATGAGACTTAAGTATGGAGCGGTGTTATATGTTGATAATAAAGGTAATAAACATATTGGATATTACGATGATGACGATGAAGAAGGAGCCATCATCTATCAGGGAGATTTCTTTTTGTCAAGAGAATATCTTGTTATTCCTTATAGAAGATGTACAAATAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAATCGAAGCAGACTGAAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 2398929-2401539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034842.1 Fusobacterium necrophorum subsp. necrophorum strain ATCC 25286 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2398929 29 100.0 36 ............................. GTTTTCTTTGTTTTCTTGCTCTGCACTCGTGTTTGG 2398994 29 100.0 38 ............................. GCTATCACTTCCAGTCGCCGGGAGAATATACTCTTTTA 2399061 29 100.0 37 ............................. GCATTTTTCTCATAATGAAAAAATAAAAATAAATGGA 2399127 29 100.0 37 ............................. GAGAAACAAGAAAAAGGAGGTAAACATGCCAAAAATA 2399193 29 100.0 36 ............................. GAACTATAAACAAATTAAGAACTTTGGAGAATTAGT 2399258 29 100.0 36 ............................. GAAATACTTGGAAAAAGAAAAGGCGGATCTGTTCAA 2399323 29 100.0 39 ............................. GGCAGTTCCCAACAAATAACAAACCATCGTTGATTTCTA 2399391 29 100.0 37 ............................. GGATGAAAAATTAGTACATATTAGCTGGAAAACTTTA 2399457 29 100.0 37 ............................. GATATACAATCAAGGGAATCTAAGGAGGAAAATATGG 2399523 29 100.0 38 ............................. GCTTGCATCTCTAGGCATGATAAACGGTGCAGAATGCA 2399590 29 100.0 38 ............................. GTCAGACAACTTATGAATTTTTTCAGAAAATTGTTTAA 2399657 29 100.0 38 ............................. GATAGAAGAATGATGCAACTTCTTTCTTTTTTTCTTGT 2399724 29 100.0 36 ............................. GGGAGATCTTTTAATGAAATATGTTCAAGGTCTTCC 2399789 29 100.0 38 ............................. GTTTAGAAGTTTGTGTTTCTTCCATATCTTCCCATTTA 2399856 29 100.0 36 ............................. GTTCTTCAGTGCCCATTTGACAATGTCTTTCTGAAA 2399921 29 100.0 36 ............................. GGCGAGATGAGGAAAAGTACCGAGTAGAGTGCTTGG 2399986 29 100.0 39 ............................. GTCCACTTTCACTTTATCACTAAACAGTAGATGTCGCTT 2400054 29 100.0 37 ............................. GTTTTTTTCGAGAGGAGATGTGCATATCGTAAAAACG 2400120 29 100.0 37 ............................. GAGAATATATCCAATACAGTGCCGCCAATAGGACAAC 2400186 29 100.0 36 ............................. GAAGTAGGATTTCCTACTTAGGTACTAAAGGAGGAA 2400251 29 100.0 37 ............................. GGATTTCGGATTTACAAAATTATGAGGTTCCTGTCGA 2400317 29 100.0 37 ............................. GGAAGAAGAGAATATCTGGGTCTTGTTCAAAAATGGG 2400383 29 100.0 37 ............................. GATTTATTTTCCTTCATGGGAAAAGACAGTTATTGAG 2400449 29 100.0 38 ............................. GGAGTTAGCACATAAAATAGGAGTAGAGTTTGCTAAAA 2400516 29 100.0 37 ............................. GTTCAATACCATATTTCTCAATCAACCCTTTTTTTTT 2400582 29 100.0 38 ............................. ATTGATTTTCTGTATTTATAATTTCATTGGAAATTCCT 2400649 29 100.0 37 ............................. AGTGTATTGTAAAAATATATATCTTTCATCTTCAGGA 2400715 29 100.0 37 ............................. TTAAAAGATAAAGAAGAGATGGCATTACAAGCCATGC 2400781 29 100.0 37 ............................. TTATTTGTCGCTCGCTCAAGATGAAGAAACAGGTATC 2400847 29 100.0 37 ............................. TTCGTTGATTTCTAAGATTTTATCGTAATTTGTAACA 2400913 29 100.0 38 ............................. TAAAATTGGCTTGGTACTGATATATTTAGTAATTATAG 2400980 29 100.0 37 ............................. TTTAATAAATCAATAAAATTCTTTTTCATACTTATCC 2401046 29 100.0 36 ............................. TTTGACTAAATTAGATATAAAAAAAGAGCAAACCAA 2401111 29 100.0 39 ............................. TATACTTTCTCCTGATATTTGTAGAGTGATAGTAAAAGT 2401179 29 100.0 36 ............................. TGAGGTGAGTTTAGAGTGGGAATATTACCAGAAATA 2401244 29 100.0 37 ............................. TTTTGGAATTGTAATTTTATCCTCTAAAACATCTGAA 2401310 29 100.0 38 ............................. TTCTTTTGAGTACTCTGAAATATCTATTAAATCGGTAA 2401377 29 100.0 38 ............................. TCACATTTACTCTCTTTTCTTACACTATTTCAATCTTC 2401444 29 100.0 38 ............................. TAAAACAATCGCCTTTCTATTAAATTCTCCACCAATGC 2401511 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 40 29 100.0 37 CTTATAATAGAAACAGATTGAAATGTAAA # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : ATTTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGTATTCATCTAATTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //